Conservation of cofitness between CSW01_01045 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01045 DNA helicase RecQ 1.0 CSW01_00650 tyrosine recombinase XerC 0.60 17
Klebsiella pneumoniae MKP103 0.67 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 95
Escherichia coli ECOR27 0.67 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC low > 76
Escherichia coli ECRC101 0.67 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.67 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.67 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.67 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.56 10
Escherichia coli ECRC62 0.67 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECRC100 0.67 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC low > 79
Escherichia coli ECRC102 0.67 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.67 EFB2_04815 ATP-dependent DNA helicase RecQ 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli BW25113 0.67 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Pantoea sp. MT58 0.67 IAI47_18360 ATP-dependent DNA helicase RecQ 0.53 IAI47_18400 tyrosine recombinase XerC low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Escherichia coli Nissle 1917 0.67 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.54 ECOLIN_RS21875 tyrosine recombinase XerC 0.35 3
Escherichia coli BL21 0.66 ECD_03701 ATP-dependent DNA helicase 0.55 ECD_03687 site-specific tyrosine recombinase low > 61
Klebsiella michiganensis M5al 0.66 BWI76_RS01245 DNA helicase RecQ 0.55 BWI76_RS01210 tyrosine recombinase XerC low > 92
Serratia liquefaciens MT49 0.66 IAI46_00770 ATP-dependent DNA helicase RecQ 0.55 IAI46_00725 tyrosine recombinase XerC low > 87
Dickeya dianthicola 67-19 0.66 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.56 HGI48_RS20045 tyrosine recombinase XerC low > 71
Erwinia tracheiphila SCR3 0.66 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Pantoea agglomerans CFBP13505 P0401 0.66 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.53 PagCFBP13505_RS15380 tyrosine recombinase XerC — —
Erwinia amylovora T8 0.66 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.54 OLJFJH_06415 tyrosine recombinase XerC low > 58
Dickeya dianthicola ME23 0.66 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.56 DZA65_RS21090 tyrosine recombinase XerC low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Erwinia tracheiphila HP pepo 2.2 0.66 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.66 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.52 MPMX20_04465 Tyrosine recombinase XerC low > 85
Rahnella sp. WP5 0.65 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.56 EX31_RS15165 tyrosine recombinase XerC low > 89
Pectobacterium carotovorum WPP14 0.65 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.54 HER17_RS01350 tyrosine recombinase XerC low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF248 ATP-dependent DNA helicase RecQ 0.55 GFF239 Tyrosine recombinase XerC — —
Shewanella sp. ANA-3 0.59 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.58 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Shewanella amazonensis SB2B 0.57 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.54 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Pseudomonas sp. SVBP6 0.46 COO64_RS21845 recQ DNA helicase RecQ 0.39 COO64_RS01270 xerC tyrosine recombinase XerC low > 93
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS40870 recQ;go_function=DNA DNA helicase RecQ 0.40 DQ20_RS49840 xerC;go_function=site-specific tyrosine recombinase XerC low > 101
Pseudomonas aeruginosa PA14 0.45 IKLFDK_17145 DNA helicase RecQ 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.46 8
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS00140 recQ;go_function=DNA DNA helicase RecQ 0.40 DY961_RS12285 xerC;go_function=site-specific tyrosine recombinase XerC low > 100
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.38 PFR28_04378 Tyrosine recombinase XerC low > 88
Marinobacter adhaerens HP15 0.45 HP15_1718 ATP-dependent DNA helicase RecQ 0.44 HP15_250 site-specific tyrosine recombinase XerC low > 73
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.38 PfGW456L13_842 Tyrosine recombinase XerC low > 87
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS19925 DNA helicase RecQ 0.37 ABZR86_RS15025 tyrosine recombinase XerC low > 74
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.38 AO356_12725 recombinase XerC low > 104
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS13000 DNA helicase RecQ 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Pseudomonas sp. S08-1 0.45 OH686_20670 ATP-dependent DNA helicase RecQ 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas segetis P6 0.45 MPMX49_02936 ATP-dependent DNA helicase RecQ 0.40 MPMX49_04536 Tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC low > 103
Rhodanobacter denitrificans MT42 0.45 LRK55_RS12700 DNA helicase RecQ 0.38 LRK55_RS08300 tyrosine recombinase XerC low > 63
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas sp. BP01 0.44 JOY50_RS01155 recQ DNA helicase RecQ 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Pseudomonas sp. DMC3 0.44 GFF2380 ATP-dependent DNA helicase RecQ 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas putida KT2440 0.44 PP_4516 ATP-dependent DNA 3 0.39 PP_5230 Tyrosine recombinase XerC 0.20 16
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.38 AO353_09050 recombinase XerC low > 101
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS21920 DNA helicase RecQ 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Variovorax sp. OAS795 0.44 ABID97_RS03395 DNA helicase RecQ 0.33 ABID97_RS06150 tyrosine recombinase XerC low > 91
Pseudomonas simiae WCS417 0.44 PS417_19950 ATP-dependent DNA helicase RecQ 0.34 PS417_27595 recombinase XerC low > 88
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas fluorescens SBW25 0.44 PFLU_RS21920 DNA helicase RecQ 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS15600 DNA helicase RecQ 0.37 LRK53_RS02315 tyrosine recombinase XerC low > 59
Pseudomonas orientalis W4I3 0.44 QF045_RS22070 DNA helicase RecQ 0.37 QF045_RS01960 tyrosine recombinase XerC low > 93
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.40 Psest_3767 tyrosine recombinase XerC 0.25 20
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.35 HSERO_RS21475 recombinase XerC 0.29 43
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC low > 53
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.25 ABIE40_RS17950 tyrosine recombinase XerC low > 107
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.24 Atu2628 site-specific recombinase — —
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Methylophilus sp. DMC18 0.43 GFF2139 ATP-dependent DNA helicase RecQ 0.40 GFF1535 Tyrosine recombinase XerC low > 43
Magnetospirillum magneticum AMB-1 0.43 AMB_RS21505 DNA helicase RecQ 0.25 AMB_RS21485 tyrosine recombinase XerC — —
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS28295 DNA helicase RecQ 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Paraburkholderia graminis OAS925 0.43 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.33 ABIE53_000426 integrase/recombinase XerC — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.34 ABZR87_RS05065 tyrosine recombinase XerC low > 80
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.31 RR42_RS00615 recombinase XerC low > 128
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Ralstonia solanacearum GMI1000 0.42 RS_RS15155 DNA helicase RecQ 0.34 RS_RS00260 Tyrosine recombinase XerC 1 low > 80
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS07220 DNA helicase RecQ 0.33 RALBFv3_RS09675 tyrosine recombinase XerC low > 76
Dechlorosoma suillum PS 0.42 Dsui_3092 ATP-dependent DNA helicase RecQ 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Ralstonia solanacearum UW163 0.42 UW163_RS06400 DNA helicase RecQ 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1958 ATP-dependent DNA helicase RecQ 0.31 GFF547 Tyrosine recombinase XerC low > 90
Ralstonia solanacearum PSI07 0.42 RPSI07_RS10025 DNA helicase RecQ 0.35 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.23 AZOBR_RS03965 tyrosine recombinase XerC — —
Lysobacter sp. OAE881 0.42 ABIE51_RS05145 DNA helicase RecQ 0.38 ABIE51_RS03035 tyrosine recombinase XerC low > 62
Variovorax sp. SCN45 0.42 GFF6415 ATP-dependent DNA helicase RecQ 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.31 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Rhodopseudomonas palustris CGA009 0.41 TX73_025080 DNA helicase RecQ 0.22 TX73_000945 tyrosine recombinase XerC low > 86
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS14585 DNA helicase RecQ 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase 0.42 64
Bosea sp. OAE506 0.41 ABIE41_RS04160 DNA helicase RecQ 0.21 ABIE41_RS07870 tyrosine recombinase XerC low > 77
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS10235 DNA helicase RecQ 0.25 ABI39_RS03835 tyrosine-type recombinase/integrase — —
Castellaniella sp019104865 MT123 0.40 ABCV34_RS07985 DNA helicase RecQ 0.34 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS14110 DNA helicase RecQ 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.38 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein low > 96
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.22 Ga0059261_2764 Site-specific recombinase XerD low > 68
Fusobacterium nucleatum SB010 0.35 HUW76_07235 DNA helicase RecQ 0.16 HUW76_06795 tyrosine-type recombinase/integrase low > 35

Not shown: 17 genomes with orthologs for CSW01_01045 only; 1 genomes with orthologs for CSW01_00650 only