Conservation of cofitness between CSW01_07150 and CSW01_00015 in Vibrio cholerae E7946 ATCC 55056

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07150 spermidine/putrescine ABC transporter permease PotC 1.0 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.72 3
Enterobacter asburiae PDN3 0.79 EX28DRAFT_1806 ABC-type spermidine/putrescine transport system, permease component II 0.75 EX28DRAFT_3993 tRNA modification GTPase TrmE — —
Escherichia coli ECRC98 0.76 JDDGAC_07090 potC spermidine/putrescine ABC transporter permease PotC 0.76 JDDGAC_18605 tRNA modification GTPase MnmE — —
Escherichia coli ECOR38 0.76 HEPCGN_24065 potC spermidine/putrescine ABC transporter permease PotC 0.76 HEPCGN_13680 tRNA modification GTPase MnmE 0.38 65
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_02544 Inner membrane ABC transporter permease protein YdcV 0.76 OHPLBJKB_04346 tRNA modification GTPase MnmE — —
Escherichia fergusonii Becca 0.76 EFB2_02851 Inner membrane ABC transporter permease protein YdcV 0.76 EFB2_04925 tRNA modification GTPase MnmE low > 86
Escherichia coli BW25113 0.76 b1124 potC spermidine/putrescine ABC transporter membrane protein (NCBI) 0.76 b3706 trmE tRNA modification GTPase (NCBI) low > 76
Escherichia coli BL21 0.76 ECD_01122 spermidine/putrescine ABC transporter permease 0.76 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase low > 61
Escherichia coli Nissle 1917 0.76 ECOLIN_RS06475 spermidine/putrescine ABC transporter permease PotC 0.76 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Escherichia coli ECOR27 0.76 NOLOHH_20945 potC spermidine/putrescine ABC transporter permease PotC 0.76 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Escherichia coli ECRC62 0.76 BNILDI_19110 potC spermidine/putrescine ABC transporter permease PotC 0.76 BNILDI_04405 tRNA modification GTPase MnmE low > 75
Escherichia coli ECRC99 0.76 KEDOAH_24325 potC spermidine/putrescine ABC transporter permease PotC 0.76 KEDOAH_13165 tRNA modification GTPase MnmE — —
Escherichia coli ECRC101 0.76 MCAODC_22790 potC spermidine/putrescine ABC transporter permease PotC 0.76 MCAODC_05495 tRNA modification GTPase MnmE — —
Escherichia coli ECRC100 0.76 OKFHMN_03430 potC spermidine/putrescine ABC transporter permease PotC 0.76 OKFHMN_14985 tRNA modification GTPase MnmE — —
Escherichia coli ECRC102 0.76 NIAGMN_24400 potC spermidine/putrescine ABC transporter permease PotC 0.76 NIAGMN_12740 tRNA modification GTPase MnmE — —
Enterobacter sp. TBS_079 0.75 MPMX20_01805 Inner membrane ABC transporter permease protein YdcV 0.75 MPMX20_04650 tRNA modification GTPase MnmE low > 85
Klebsiella pneumoniae MKP103 0.75 KDGMDA_18850 spermidine/putrescine ABC transporter permease PotC 0.75 KDGMDA_08700 tRNA modification GTPase MnmE low > 95
Klebsiella michiganensis M5al 0.74 BWI76_RS11245 spermidine/putrescine ABC transporter permease PotC 0.77 BWI76_RS00050 tRNA modification GTPase — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS11670 spermidine/putrescine ABC transporter permease PotC 0.75 HER17_RS21825 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF3405 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.76 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 78
Marinobacter adhaerens HP15 0.56 HP15_4064 spermidine/putrescine ABC transporter membrane protein 0.68 HP15_3698 tRNA modification GTPase TrmE — —
Desulfovibrio vulgaris Hildenborough JW710 0.55 DVU0096 potC polyamine ABC transporter, permease protein (TIGR) 0.22 DVU1079 trmE tRNA modification GTPase TrmE (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.54 DvMF_1958 potC spermidine/putrescine ABC transporter membrane protein (RefSeq) 0.27 DvMF_0886 trmE tRNA modification GTPase TrmE (RefSeq) low > 51
Sinorhizobium meliloti 1021 0.46 SMc00773 putrescine ABC transporter permease 0.28 SMc02797 tRNA modification GTPase TrmE — —
Rhizobium sp. OAE497 0.46 ABIE40_RS03280 ABC transporter permease subunit 0.28 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 107
Rhodopseudomonas palustris CGA009 0.43 TX73_021555 ABC transporter permease subunit 0.30 TX73_001535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.36 31
Azospirillum sp. SherDot2 0.42 MPMX19_04880 Inner membrane ABC transporter permease protein YdcV 0.26 MPMX19_02568 tRNA modification GTPase MnmE — —
Xanthobacter sp. DMC5 0.42 GFF47 Inner membrane ABC transporter permease protein YdcV 0.28 GFF3741 tRNA modification GTPase MnmE — —
Magnetospirillum magneticum AMB-1 0.42 AMB_RS13195 putrescine ABC transporter permease PotI 0.27 AMB_RS00005 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Rhodospirillum rubrum S1H 0.41 Rru_A1015 Binding-protein-dependent transport systems inner membrane component (NCBI) 0.26 Rru_A3624 tRNA modification GTPase TrmE (NCBI) — —
Bosea sp. OAE506 0.41 ABIE41_RS21635 ABC transporter permease subunit 0.27 ABIE41_RS04680 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 77
Fusobacterium nucleatum SB010 0.41 HUW76_00740 ABC transporter permease 0.27 HUW76_10755 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Azospirillum brasilense Sp245 0.40 AZOBR_RS08830 putrescine/spermidine ABC transporter permease 0.27 AZOBR_RS01805 tRNA modification GTPase TrmE low > 97
Agrobacterium fabrum C58 0.40 Atu0612 ABC transporter, membrane spanning protein 0.28 Atu2832 tRNA modification GTPase low > 89
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.2212.1 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.41 Xcc-8004.5407.1 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.30 24
Phaeobacter inhibens DSM 17395 0.40 PGA1_c34450 putrescine transport system permease protein PotI 0.26 PGA1_c35110 tRNA modification GTPase MnmE — —
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_03236 spermidine/putrescine transport system permease protein potC 0.28 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase low > 67
Caulobacter crescentus NA1000 0.39 CCNA_03236 spermidine/putrescine transport system permease protein potC 0.28 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase low > 66
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_2828 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.64 PfGW456L13_670 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas sp. S08-1 0.38 OH686_11310 Spermidine/putrescine import ABC transporter permease protein PotC 0.63 OH686_12655 tRNA modification GTPase TrmE — —
Pseudomonas sp. RS175 0.38 PFR28_04291 Inner membrane ABC transporter permease protein YdcV 0.64 PFR28_04588 tRNA modification GTPase MnmE — —
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS07135 ABC transporter permease subunit 0.49 QEN71_RS29655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_05183 putrescine transport system permease protein 0.49 H281DRAFT_02320 tRNA modification GTPase trmE — —
Pseudomonas aeruginosa PA14 0.37 IKLFDK_18425 spermidine/putrescine ABC transporter permease 0.66 IKLFDK_25575 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 100
Pseudomonas segetis P6 0.37 MPMX49_00550 Inner membrane ABC transporter permease protein YdcV 0.64 MPMX49_00248 tRNA modification GTPase MnmE — —
Shewanella loihica PV-4 0.37 Shew_0976 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.73 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) — —
Paraburkholderia graminis OAS925 0.37 ABIE53_002367 putrescine transport system permease protein 0.50 ABIE53_000332 tRNA modification GTPase — —
Pseudomonas simiae WCS417 0.37 PS417_27105 spermidine/putrescine ABC transporter permease 0.64 PS417_28540 tRNA modification GTPase MnmE — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS23135 putrescine/spermidine ABC transporter permease 0.50 BPHYT_RS19830 tRNA modification GTPase TrmE — —
Shewanella oneidensis MR-1 0.37 SO1273 polyamine ABC transporter, permease protein (NCBI ptt file) 0.75 SO0003 trmE tRNA modification GTPase TrmE (NCBI ptt file) low > 76
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS28755 ABC transporter permease subunit 0.64 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas fluorescens SBW25 0.37 PFLU_RS28755 ABC transporter permease subunit 0.64 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 109
Pantoea sp. MT58 0.37 IAI47_13030 putrescine ABC transporter permease PotI 0.73 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Pseudomonas lactucae CFBP13502 0.37 GEMAOFIL_05561 Inner membrane ABC transporter permease protein YdcV 0.64 GEMAOFIL_00178 tRNA modification GTPase MnmE — —
Shewanella sp. ANA-3 0.37 Shewana3_3094 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.75 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) low > 73
Pseudomonas putida KT2440 0.37 PP_5177 spermidine/putrescine ABC transporter - permease subunit 0.65 PP_0005 GTPase — —
Serratia liquefaciens MT49 0.36 IAI46_08385 putrescine ABC transporter permease PotI 0.75 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 86
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS04300 putrescine ABC transporter permease PotI 0.74 PagCFBP13505_RS19345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Castellaniella sp019104865 MT123 0.36 ABCV34_RS02375 ABC transporter permease subunit 0.46 ABCV34_RS11895 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas sp. BP01 0.36 JOY50_RS22330 ABC transporter permease subunit 0.65 JOY50_RS08375 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas sp. DMC3 0.36 GFF283 Inner membrane ABC transporter permease protein YdcV 0.64 GFF573 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_13175 spermidine/putrescine ABC transporter permease 0.64 AO356_11660 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_4517 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.64 Pf6N2E2_4202 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas sp. SVBP6 0.36 COO64_RS00870 ABC transporter permease subunit 0.63 COO64_RS02085 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_08560 spermidine/putrescine ABC transporter permease 0.64 AO353_10455 tRNA modification GTPase MnmE low > 101
Pseudomonas stutzeri RCH2 0.36 Psest_4280 ABC-type spermidine/putrescine transport system, permease component II 0.64 Psest_4373 tRNA modification GTPase TrmE — —
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_2263 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.64 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Erwinia amylovora T8 0.36 OLJFJH_16295 putrescine ABC transporter permease PotI 0.74 OLJFJH_05190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Shewanella amazonensis SB2B 0.35 Sama_2639 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.75 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_4861 Binding-protein-dependent transport systems inner membrane component 0.64 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_4861 Binding-protein-dependent transport systems inner membrane component 0.64 Psyr_5133 tRNA modification GTPase trmE low > 86
Rahnella sp. WP5 0.35 EX31_RS09615 putrescine ABC transporter permease PotI 0.75 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 89
Dickeya dadantii 3937 0.34 DDA3937_RS09475 putrescine ABC transporter permease PotI 0.76 DDA3937_RS21310 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 74
Dickeya dianthicola ME23 0.34 DZA65_RS09805 putrescine ABC transporter permease PotI 0.75 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Dickeya dianthicola 67-19 0.34 HGI48_RS09495 putrescine ABC transporter permease PotI 0.75 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 71
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS08110 ABC transporter permease 0.29 HMPREF1078_RS13880 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 61
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS12430 ABC transporter permease 0.28 HMPREF1181_RS13360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 56
Bacteroides thetaiotaomicron VPI-5482 0.31 BT1289 putrescine transport system permease protein potI (NCBI ptt file) 0.28 BT4551 putative GTPase, ThdF family (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS17810 ABC transporter permease 0.27 ABI39_RS18355 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 72
Bacteroides ovatus ATCC 8483 0.29 BACOVA_00084 ABC transporter, permease protein 0.28 BACOVA_05338 tRNA modification GTPase TrmE low > 96
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS03230 ABC transporter permease 0.28 HMPREF1058_RS05755 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 67
Variovorax sp. SCN45 0.28 GFF5033 ABC-type spermidine/putrescine transport system, permease component II 0.49 GFF3275 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE — —
Variovorax sp. OAS795 0.28 ABID97_RS04045 ABC transporter permease 0.50 ABID97_RS02655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF2032 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) 0.52 GFF2437 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS05400 polyamine ABC transporter permease 0.48 HSERO_RS21670 tRNA modification GTPase TrmE — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_1598 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.28 Dshi_3454 tRNA modification GTPase TrmE (RefSeq) — —
Acidovorax sp. GW101-3H11 0.23 Ac3H11_4183 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) 0.51 Ac3H11_4264 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 79
Ralstonia solanacearum PSI07 0.21 RPSI07_RS16225 ABC transporter permease 0.49 RPSI07_RS23950 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum UW163 0.21 UW163_RS14560 ABC transporter permease 0.49 UW163_RS04170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum IBSBF1503 0.21 RALBFv3_RS01250 ABC transporter permease 0.49 RALBFv3_RS09410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS12705 ABC transporter permease 0.49 ABZR87_RS05350 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 80
Ralstonia solanacearum GMI1000 0.21 RS_RS08745 ABC transporter permease 0.49 RS_RS00020 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —

Not shown: 0 genomes with orthologs for CSW01_07150 only; 25 genomes with orthologs for CSW01_00015 only