Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS15920 in Burkholderia phytofirmans PsJN

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS15920 argininosuccinate synthase 0.73 17
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 1.00 ABIE53_003355 argininosuccinate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.99 H281DRAFT_04120 argininosuccinate synthase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.16 QEN71_RS09235 argininosuccinate synthase 0.68 52
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.15 RPSI07_RS12120 argininosuccinate synthase — —
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.15 UW163_RS08445 argininosuccinate synthase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.15 RALBFv3_RS05180 argininosuccinate synthase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.15 RS_RS12800 argininosuccinate synthase — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.15 ABZR87_RS00835 argininosuccinate synthase 0.60 28
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.16 HSERO_RS07180 argininosuccinate synthase — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.91 RR42_RS17170 argininosuccinate synthase — —
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.74 OH686_03930 argininosuccinate synthase 0.77 15
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.76 PP_1088 Argininosuccinate synthase — —
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.46 Shewana3_3902 argininosuccinate synthase (RefSeq) 0.87 60
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.74 Psyr_3892 argininosuccinate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.74 Psyr_3892 argininosuccinate synthase — —
Pseudomonas sp. RS175 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.75 PFR28_03353 Argininosuccinate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.75 AO356_18325 argininosuccinate synthase 0.53 14
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.75 PS417_05640 argininosuccinate synthase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.74 PFLU_RS05725 argininosuccinate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 Pf6N2E2_5590 Argininosuccinate synthase (EC 6.3.4.5) — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 Pf1N1B4_742 Argininosuccinate synthase (EC 6.3.4.5) 0.44 65
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.74 PFLU_RS05725 argininosuccinate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.47 CSW01_13370 argininosuccinate synthase low > 62
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.74 HP15_2367 argininosuccinate synthase — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.74 PfGW456L13_1749 Argininosuccinate synthase (EC 6.3.4.5) 0.76 34
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.76 Psest_3121 argininosuccinate synthase — —
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.46 SO0278 argG argininosuccinate synthase (NCBI ptt file) 0.85 55
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.74 AO353_04105 argininosuccinate synthase 0.75 12
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.45 Sama_0259 argininosuccinate synthase (RefSeq) 0.69 47
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.47 IAI47_00915 argininosuccinate synthase — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.45 Shew_0205 argininosuccinate synthase (RefSeq) 0.78 53
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.14 b3172 argG argininosuccinate synthase (NCBI) 0.92 24
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.14 ECD_03038 argininosuccinate synthetase 0.58 34
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.14 OHPLBJKB_00528 Argininosuccinate synthase low > 73
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.14 BNILDI_01645 argG argininosuccinate synthase 0.92 30
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.14 NOLOHH_09890 argG argininosuccinate synthase 0.82 72
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.14 HEPCGN_16965 argG argininosuccinate synthase 0.79 49
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.14 NIAGMN_15850 argG argininosuccinate synthase — —
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.14 JDDGAC_21715 argG argininosuccinate synthase 0.78 55
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.14 KEDOAH_10060 argG argininosuccinate synthase — —
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.14 MCAODC_08610 argG argininosuccinate synthase 0.86 11
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.14 OKFHMN_18090 argG argininosuccinate synthase 0.93 51
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.14 ECOLIN_RS18275 argininosuccinate synthase 0.75 31
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.14 Ac3H11_2616 Argininosuccinate synthase (EC 6.3.4.5) — —
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.14 EFB2_00651 Argininosuccinate synthase low > 86
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.48 IAI46_24505 argininosuccinate synthase 0.70 9
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.47 LU632_RS19605 argininosuccinate synthase low > 74
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.15 GFF3096 Argininosuccinate synthase (EC 6.3.4.5) — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.46 MIT1002_00468 Argininosuccinate synthase — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.15 ABID97_RS21670 argininosuccinate synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.20 Xcc-8004.2318.1 Argininosuccinate synthase (EC 6.3.4.5) 0.79 31
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.19 ABIE51_RS13405 argininosuccinate synthase 0.70 28
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.22 B158DRAFT_1976 argininosuccinate synthase (EC 6.3.4.5) low > 40
Methanococcus maripaludis S2 0.21 MMP_RS04855 shikimate dehydrogenase 0.39 MMP_RS00425 argininosuccinate synthase — —
Methanococcus maripaludis JJ 0.21 MMJJ_RS00280 shikimate dehydrogenase 0.37 MMJJ_RS05060 argininosuccinate synthase — —
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.14 TX73_002040 argininosuccinate synthase — —
Sinorhizobium meliloti 1021 0.20 SMc02791 shikimate 5-dehydrogenase 0.64 SMc03826 argininosuccinate synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.59 DVU1095 argG argininosuccinate synthase (TIGR) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.41 Synpcc7942_0009 argG argininosuccinate synthase — —
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.57 DvMF_0047 argininosuccinate synthase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c35150 shikimate dehydrogenase AroE 0.67 PGA1_c34920 argininosuccinate synthase ArgG — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.68 Rru_A3751 Argininosuccinate synthase (NCBI) — —
Azospirillum sp. SherDot2 0.19 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.70 MPMX19_02369 Argininosuccinate synthase — —
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.64 ABIE40_RS18150 argininosuccinate synthase — —
Bosea sp. OAE506 0.18 ABIE41_RS04650 shikimate dehydrogenase 0.64 ABIE41_RS00340 argininosuccinate synthase — —
Azospirillum brasilense Sp245 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase 0.70 AZOBR_RS00785 argininosuccinate synthase — —
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.67 CCNA_00128 argininosuccinate synthase — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.67 CCNA_00128 argininosuccinate synthase low > 67
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS14200 shikimate dehydrogenase 0.18 HMPREF1078_RS10575 argininosuccinate synthase 0.93 4
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS06320 shikimate dehydrogenase 0.17 HMPREF1181_RS03460 argininosuccinate synthase 0.82 19
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.19 ABZR88_RS15515 argininosuccinate synthase — —
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS16750 shikimate dehydrogenase 0.17 HMPREF1058_RS08845 argininosuccinate synthase low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS12665 shikimate dehydrogenase 0.17 ABI39_RS02975 argininosuccinate synthase 0.85 8
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1145 Shikimate 5-dehydrogenase 0.19 Echvi_3846 argininosuccinate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_19075 shikimate dehydrogenase 0.18 CA264_06255 argininosuccinate synthase — —
Magnetospirillum magneticum AMB-1 0.14 AMB_RS23010 shikimate dehydrogenase 0.68 AMB_RS05720 argininosuccinate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.18 CA265_RS18545 argininosuccinate synthase — —
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.17 BT3760 arginosuccinate synthetase (EC 6.3.4.5) (from data) — —
Bacteroides ovatus ATCC 8483 0.13 BACOVA_05065 putative shikimate dehydrogenase 0.17 BACOVA_03590 putative argininosuccinate synthase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.34 Rv1658 Probable argininosuccinate synthase ArgG — —

Not shown: 10 genomes with orthologs for BPHYT_RS16975 only; 12 genomes with orthologs for BPHYT_RS15920 only