Conservation of cofitness between BPHYT_RS15920 and BPHYT_RS14895 in Burkholderia phytofirmans PsJN

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS15920 argininosuccinate synthase 1.0 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.91 14
Paraburkholderia graminis OAS925 1.00 ABIE53_003355 argininosuccinate synthase 0.91 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.99 H281DRAFT_04120 argininosuccinate synthase 0.95 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Cupriavidus basilensis FW507-4G11 0.91 RR42_RS17170 argininosuccinate synthase 0.67 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas simiae WCS417 0.75 PS417_05640 argininosuccinate synthase 0.21 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas fluorescens SBW25 0.74 PFLU_RS05725 argininosuccinate synthase 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS05725 argininosuccinate synthase 0.21 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_3892 argininosuccinate synthase 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_3892 argininosuccinate synthase 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum brasilense Sp245 0.70 AZOBR_RS00785 argininosuccinate synthase 0.14 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum sp. SherDot2 0.70 MPMX19_02369 Argininosuccinate synthase 0.13 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Magnetospirillum magneticum AMB-1 0.68 AMB_RS05720 argininosuccinate synthase 0.15 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.68 Rru_A3751 Argininosuccinate synthase (NCBI) 0.12 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.67 CCNA_00128 argininosuccinate synthase 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Caulobacter crescentus NA1000 0.67 CCNA_00128 argininosuccinate synthase 0.15 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phaeobacter inhibens DSM 17395 0.67 PGA1_c34920 argininosuccinate synthase ArgG 0.13 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.67 A4249_RS14275 argininosuccinate synthase 0.16 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.65 Dshi_3472 Argininosuccinate synthase (RefSeq) 0.14 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.64 Ga0059261_1393 argininosuccinate synthase (EC 6.3.4.5) 0.14 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Agrobacterium fabrum C58 0.64 Atu2667 argininosuccinate synthase 0.22 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.64 ABIE40_RS18150 argininosuccinate synthase 0.24 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sinorhizobium meliloti 1021 0.64 SMc03826 argininosuccinate synthase 0.17 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.64 ABIE41_RS00340 argininosuccinate synthase 0.14 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.59 DVU1095 argG argininosuccinate synthase (TIGR) 0.27 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_0047 argininosuccinate synthase (RefSeq) 0.31 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Serratia liquefaciens MT49 0.48 IAI46_24505 argininosuccinate synthase 0.54 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase 0.79 34
Pantoea sp. MT58 0.47 IAI47_00915 argininosuccinate synthase 0.54 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Erwinia tracheiphila SCR3 0.47 LU632_RS19605 argininosuccinate synthase 0.51 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.74 28
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_13370 argininosuccinate synthase 0.58 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Shewanella oneidensis MR-1 0.46 SO0278 argG argininosuccinate synthase (NCBI ptt file) 0.56 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) 0.84 74
Shewanella sp. ANA-3 0.46 Shewana3_3902 argininosuccinate synthase (RefSeq) 0.56 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.88 30
Alteromonas macleodii MIT1002 0.46 MIT1002_00468 Argininosuccinate synthase 0.53 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella amazonensis SB2B 0.45 Sama_0259 argininosuccinate synthase (RefSeq) 0.56 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.45 Shew_0205 argininosuccinate synthase (RefSeq) 0.56 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 60
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0009 argG argininosuccinate synthase 0.15 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis S2 0.39 MMP_RS00425 argininosuccinate synthase 0.25 MMP_RS06205 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis JJ 0.37 MMJJ_RS05060 argininosuccinate synthase 0.25 MMJJ_RS08145 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bifidobacterium breve UCC2003 0.35 BBR_RS13915 argininosuccinate synthase 0.17 BBR_RS14370 3-phosphoshikimate 1-carboxyvinyltransferase low > 34
Mycobacterium tuberculosis H37Rv 0.34 Rv1658 Probable argininosuccinate synthase ArgG 0.16 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —
Kangiella aquimarina DSM 16071 0.22 B158DRAFT_1976 argininosuccinate synthase (EC 6.3.4.5) 0.21 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 40
Dyella japonica UNC79MFTsu3.2 0.20 ABZR86_RS08715 arginosuccinate synthetase (EC 6.3.4.5) (from data) 0.18 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase 0.92 54
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.2318.1 Argininosuccinate synthase (EC 6.3.4.5) 0.15 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.77 37
Lysobacter sp. OAE881 0.19 ABIE51_RS13405 argininosuccinate synthase 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS02400 argininosuccinate synthase 0.16 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter denitrificans MT42 0.19 LRK55_RS02155 argininosuccinate synthase 0.17 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase low > 63
Mucilaginibacter yixingensis YX-36 DSM 26809 0.19 ABZR88_RS15515 argininosuccinate synthase 0.25 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_09465 argG argininosuccinate synthase 0.17 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_3846 argininosuccinate synthase 0.25 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS18545 argininosuccinate synthase 0.24 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_06255 argininosuccinate synthase 0.21 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS10575 argininosuccinate synthase 0.26 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS08845 argininosuccinate synthase 0.27 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS02975 argininosuccinate synthase 0.27 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase 0.60 53
Bacteroides ovatus ATCC 8483 0.17 BACOVA_03590 putative argininosuccinate synthase 0.28 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.17 BT3760 arginosuccinate synthetase (EC 6.3.4.5) (from data) 0.28 BT2186 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) — —
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS03460 argininosuccinate synthase 0.26 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase low > 56
Herbaspirillum seropedicae SmR1 0.16 HSERO_RS07180 argininosuccinate synthase 0.62 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS09235 argininosuccinate synthase 0.90 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.89 28
Ralstonia solanacearum GMI1000 0.15 RS_RS12800 argininosuccinate synthase 0.69 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum PSI07 0.15 RPSI07_RS12120 argininosuccinate synthase 0.69 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia sp. UNC404CL21Col 0.15 ABZR87_RS00835 argininosuccinate synthase 0.70 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.68 39
Ralstonia solanacearum IBSBF1503 0.15 RALBFv3_RS05180 argininosuccinate synthase 0.69 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum UW163 0.15 UW163_RS08445 argininosuccinate synthase 0.69 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rahnella sp. WP5 0.15 EX31_RS13445 argininosuccinate synthase 0.56 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodopseudomonas palustris CGA009 0.14 TX73_002040 argininosuccinate synthase 0.14 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.14 OHPLBJKB_00528 Argininosuccinate synthase 0.54 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Escherichia coli ECRC99 0.14 KEDOAH_10060 argG argininosuccinate synthase 0.54 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli BW25113 0.14 b3172 argG argininosuccinate synthase (NCBI) 0.54 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.92 15
Escherichia coli BL21 0.14 ECD_03038 argininosuccinate synthetase 0.54 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.84 22
Escherichia coli ECRC98 0.14 JDDGAC_21715 argG argininosuccinate synthase 0.54 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.94 4
Escherichia coli ECRC101 0.14 MCAODC_08610 argG argininosuccinate synthase 0.54 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.90 33
Escherichia coli ECOR38 0.14 HEPCGN_16965 argG argininosuccinate synthase 0.54 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.95 44
Escherichia coli ECRC102 0.14 NIAGMN_15850 argG argininosuccinate synthase 0.54 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC62 0.14 BNILDI_01645 argG argininosuccinate synthase 0.54 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.95 39
Escherichia coli ECOR27 0.14 NOLOHH_09890 argG argininosuccinate synthase 0.54 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.87 46
Escherichia fergusonii Becca 0.14 EFB2_00651 Argininosuccinate synthase 0.55 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli Nissle 1917 0.14 ECOLIN_RS18275 argininosuccinate synthase 0.55 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase 0.79 32
Escherichia coli ECRC100 0.14 OKFHMN_18090 argG argininosuccinate synthase 0.54 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.96 28

Not shown: 15 genomes with orthologs for BPHYT_RS15920 only; 9 genomes with orthologs for BPHYT_RS14895 only