Conservation of cofitness between BPHYT_RS17380 and BPHYT_RS04955 in Burkholderia phytofirmans PsJN

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS17380 ribulose-phosphate 3-epimerase 1.0 BPHYT_RS04955 methionyl-tRNA synthetase 0.72 9
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase 0.94 H281DRAFT_00155 methionyl-tRNA synthetase — —
Paraburkholderia graminis OAS925 0.96 ABIE53_003638 ribulose-phosphate 3-epimerase 0.94 ABIE53_001265 methionyl-tRNA synthetase — —
Paraburkholderia sabiae LMG 24235 0.91 QEN71_RS27540 ribulose-phosphate 3-epimerase 0.88 QEN71_RS25025 methionine--tRNA ligase — —
Cupriavidus basilensis FW507-4G11 0.80 RR42_RS18285 ribulose-phosphate 3-epimerase 0.77 RR42_RS16020 methionyl-tRNA synthetase — —
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS06475 ribulose-phosphate 3-epimerase 0.77 RALBFv3_RS04405 methionine--tRNA ligase — —
Ralstonia solanacearum UW163 0.77 UW163_RS07150 ribulose-phosphate 3-epimerase 0.77 UW163_RS09265 methionine--tRNA ligase — —
Herbaspirillum seropedicae SmR1 0.77 HSERO_RS19425 ribulose-phosphate 3-epimerase 0.60 HSERO_RS15470 methionyl-tRNA synthetase — —
Ralstonia solanacearum GMI1000 0.77 RS_RS14420 ribulose-phosphate 3-epimerase 0.77 RS_RS11955 methionine--tRNA ligase — —
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS02130 ribulose-phosphate 3-epimerase 0.78 ABZR87_RS16260 methionine--tRNA ligase — —
Ralstonia solanacearum PSI07 0.77 RPSI07_RS10765 ribulose-phosphate 3-epimerase 0.77 RPSI07_RS12965 methionine--tRNA ligase — —
Dechlorosoma suillum PS 0.75 Dsui_0221 ribulose-phosphate 3-epimerase 0.63 Dsui_1248 protein containing C-terminal region/beta chain of methionyl-tRNA synthetase — —
Klebsiella michiganensis M5al 0.74 BWI76_RS26070 ribulose-phosphate 3-epimerase 0.51 BWI76_RS19425 methionine--tRNA ligase — —
Serratia liquefaciens MT49 0.74 IAI46_23685 ribulose-phosphate 3-epimerase 0.49 IAI46_07960 methionine--tRNA ligase — —
Dickeya dianthicola ME23 0.73 DZA65_RS20745 ribulose-phosphate 3-epimerase 0.49 DZA65_RS07050 methionine--tRNA ligase — —
Dickeya dianthicola 67-19 0.73 HGI48_RS19660 ribulose-phosphate 3-epimerase 0.49 HGI48_RS06695 methionine--tRNA ligase — —
Escherichia coli ECRC99 0.73 KEDOAH_11010 dam adenine-specific DNA-methyltransferase 0.51 KEDOAH_04160 metG methionine--tRNA ligase — —
Escherichia coli ECOR27 0.73 NOLOHH_08920 dam adenine-specific DNA-methyltransferase 0.51 NOLOHH_15305 metG methionine--tRNA ligase — —
Escherichia coli ECRC101 0.73 MCAODC_07660 dam adenine-specific DNA-methyltransferase 0.51 MCAODC_21155 metG methionine--tRNA ligase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase 0.51 OHPLBJKB_01596 Methionine--tRNA ligase — —
Escherichia coli ECOR38 0.73 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase 0.51 HEPCGN_02705 metG methionine--tRNA ligase low > 87
Escherichia coli ECRC100 0.73 OKFHMN_17130 dam adenine-specific DNA-methyltransferase 0.51 OKFHMN_24005 metG methionine--tRNA ligase — —
Escherichia coli BW25113 0.73 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) 0.51 b2114 metG methionyl-tRNA synthetase (NCBI) low > 76
Enterobacter asburiae PDN3 0.73 EX28DRAFT_4156 ribulose-phosphate 3-epimerase 0.51 EX28DRAFT_0439 methionyl-tRNA synthetase (EC 6.1.1.10) — —
Escherichia coli ECRC102 0.73 NIAGMN_14900 dam adenine-specific DNA-methyltransferase 0.51 NIAGMN_21950 metG methionine--tRNA ligase — —
Escherichia coli ECRC62 0.73 BNILDI_02600 dam adenine-specific DNA-methyltransferase 0.51 BNILDI_14255 metG methionine--tRNA ligase — —
Escherichia fergusonii Becca 0.73 EFB2_00442 Ribulose-phosphate 3-epimerase 0.51 EFB2_01742 Methionine--tRNA ligase — —
Escherichia coli ECRC98 0.73 JDDGAC_20760 dam adenine-specific DNA-methyltransferase 0.51 JDDGAC_28115 metG methionine--tRNA ligase — —
Dickeya dadantii 3937 0.73 DDA3937_RS19530 ribulose-phosphate 3-epimerase 0.49 DDA3937_RS06675 methionine--tRNA ligase — —
Escherichia coli Nissle 1917 0.73 ECOLIN_RS19345 ribulose-phosphate 3-epimerase 0.51 ECOLIN_RS12395 methionine--tRNA ligase — —
Escherichia coli BL21 0.73 ECD_03238 D-ribulose-5-phosphate 3-epimerase 0.51 ECD_02044 methionyl-tRNA synthetase low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.50 GFF3824 Methionyl-tRNA synthetase (EC 6.1.1.10) — —
Enterobacter sp. TBS_079 0.72 MPMX20_04275 Ribulose-phosphate 3-epimerase 0.51 MPMX20_03090 Methionine--tRNA ligase low > 85
Shewanella amazonensis SB2B 0.71 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) 0.52 Sama_2049 metG methionyl-tRNA synthetase (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) 0.52 SO2619 metG methionyl-tRNA synthetase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.71 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) 0.52 Shewana3_1760 metG methionyl-tRNA synthetase (RefSeq) — —
Erwinia tracheiphila SCR3 0.71 LU632_RS22850 rpe ribulose-phosphate 3-epimerase 0.50 LU632_RS08570 metG methionine--tRNA ligase — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS01795 ribulose-phosphate 3-epimerase 0.50 HER17_RS14660 methionine--tRNA ligase low > 75
Shewanella loihica PV-4 0.70 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) 0.52 Shew_1573 metG methionyl-tRNA synthetase (RefSeq) — —
Pantoea sp. MT58 0.70 IAI47_01910 ribulose-phosphate 3-epimerase 0.49 IAI47_06775 methionine--tRNA ligase — —
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13285 ribulose-phosphate 3-epimerase 0.52 CSW01_05265 methionine--tRNA ligase low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.50 Psyr_3886 methionyl-tRNA synthetase — —
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.50 Psyr_3886 methionyl-tRNA synthetase — —
Rahnella sp. WP5 0.70 EX31_RS04705 ribulose-phosphate 3-epimerase 0.50 EX31_RS11555 methionine--tRNA ligase — —
Pseudomonas stutzeri RCH2 0.69 Psest_3652 ribulose-phosphate 3-epimerase 0.50 Psest_3047 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS12200 ribulose-phosphate 3-epimerase 0.48 ABZR86_RS08170 methionine--tRNA ligase low > 74
Pseudomonas sp. RS175 0.69 PFR28_04049 Ribulose-phosphate 3-epimerase 0.50 PFR28_03343 Methionine--tRNA ligase — —
Pseudomonas fluorescens SBW25 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.51 PFLU_RS05750 methionine--tRNA ligase — —
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.51 PFLU_RS05750 methionine--tRNA ligase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.57 GFF1208 Methionyl-tRNA synthetase (EC 6.1.1.10) — —
Pseudomonas putida KT2440 0.69 PP_0415 ribulose-5-phosphate 3-epimerase 0.51 PP_1097 Methionine--tRNA ligase — —
Lysobacter sp. OAE881 0.69 ABIE51_RS04135 ribulose-phosphate 3-epimerase 0.50 ABIE51_RS08085 methionine--tRNA ligase — —
Pseudomonas simiae WCS417 0.69 PS417_25735 ribulose-phosphate 3-epimerase 0.51 PS417_05665 methionine--tRNA ligase — —
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.50 Pf1N1B4_733 Methionyl-tRNA synthetase (EC 6.1.1.10) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_0267 ribulose-phosphate 3-epimerase 0.51 B158DRAFT_2379 methionyl-tRNA synthetase (EC 6.1.1.10) — —
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10270 ribulose-phosphate 3-epimerase 0.53 ABCV34_RS08930 methionine--tRNA ligase — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.50 PfGW456L13_1759 Methionyl-tRNA synthetase (EC 6.1.1.10) — —
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.48 Pf6N2E2_5600 Methionyl-tRNA synthetase (EC 6.1.1.10) — —
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_14410 ribulose phosphate epimerase 0.50 AO356_18375 methionine--tRNA ligase — —
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_07240 ribulose phosphate epimerase 0.50 AO353_04055 methionine--tRNA ligase — —
Pseudomonas sp. S08-1 0.68 OH686_15115 ribulose-phosphate 3-epimerase 0.52 OH686_03860 Methionyl-tRNA synthetase — —
Marinobacter adhaerens HP15 0.66 HP15_3286 ribulose-phosphate 3-epimerase-like protein 0.53 HP15_1292 methionyl-tRNA synthetase — —
Variovorax sp. OAS795 0.65 ABID97_RS04905 ribulose-phosphate 3-epimerase 0.56 ABID97_RS07475 methionine--tRNA ligase — —
Alteromonas macleodii MIT1002 0.65 MIT1002_00441 Ribulose-phosphate 3-epimerase 0.52 MIT1002_02491 Methionine--tRNA ligase — —
Variovorax sp. SCN45 0.65 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.56 GFF2588 Methionyl-tRNA synthetase (EC 6.1.1.10) — —
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.49 Xcc-8004.3595.1 Methionyl-tRNA synthetase (EC 6.1.1.10) — —
Acinetobacter radioresistens SK82 0.64 MPMX26_02569 Ribulose-phosphate 3-epimerase 0.50 MPMX26_02526 Methionine--tRNA ligase — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase 0.48 LRK55_RS01625 methionine--tRNA ligase — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS11390 ribulose-phosphate 3-epimerase 0.48 LRK54_RS01835 methionine--tRNA ligase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase 0.48 OKGIIK_04685 metG methionine--tRNA ligase — —
Acidovorax sp. GW101-3H11 0.62 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.56 Ac3H11_3818 Methionyl-tRNA synthetase (EC 6.1.1.10) — —
Desulfovibrio vulgaris Hildenborough JW710 0.44 DVU2531 rpe ribulose-phosphate 3-epimerase (TIGR) 0.15 DVU2055 metG methionyl-tRNA synthetase (TIGR) — —
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS08990 ribulose-phosphate 3-epimerase 0.23 CA265_RS20270 methionine--tRNA ligase — —
Fusobacterium nucleatum SB010 0.42 HUW76_06410 ribulose-phosphate 3-epimerase 0.14 HUW76_03910 methionine--tRNA ligase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_21180 ribulose-phosphate 3-epimerase 0.24 CA264_00570 methionine--tRNA ligase low > 74
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_0977 Ribulose-phosphate 3-epimerase (RefSeq) 0.14 DvMF_0759 methionyl-tRNA synthetase (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS06500 ribulose-phosphate 3-epimerase 0.23 ABZR88_RS19810 methionine--tRNA ligase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_3575 ribulose-phosphate 3-epimerase 0.25 Echvi_2297 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain low > 79
Bacteroides ovatus ATCC 8483 0.37 BACOVA_01203 ribulose-phosphate 3-epimerase 0.27 BACOVA_02185 methionine--tRNA ligase — —
Bacteroides thetaiotaomicron VPI-5482 0.37 BT3946 ribulose-phosphate 3-epimerase (NCBI ptt file) 0.27 BT2933 Methionyl-tRNA synthetase (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS00800 ribulose-phosphate 3-epimerase 0.27 HMPREF1078_RS07310 methionine--tRNA ligase — —
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS06505 ribulose-phosphate 3-epimerase 0.26 HMPREF1181_RS01280 methionine--tRNA ligase — —
Phocaeicola vulgatus CL09T03C04 0.36 HMPREF1058_RS07710 ribulose-phosphate 3-epimerase 0.25 HMPREF1058_RS09700 methionine--tRNA ligase — —
Methanococcus maripaludis JJ 0.35 MMJJ_RS08595 ribulose-phosphate 3-epimerase 0.24 MMJJ_RS03635 methionine--tRNA ligase — —
Methanococcus maripaludis S2 0.35 MMP_RS05755 ribulose-phosphate 3-epimerase 0.23 MMP_RS01740 methionine--tRNA ligase — —

Not shown: 18 genomes with orthologs for BPHYT_RS17380 only; 0 genomes with orthologs for BPHYT_RS04955 only