| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu3727 | | hypothetical protein | 1.0 | Atu4618 | | dTDP-rhamnose-3,5-epimerase | 0.48 | 19 |
| Sinorhizobium meliloti 1021 | 0.92 | SMc03969 | | hypothetical protein | 0.48 | SM_b21325 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 103 |
| Rhizobium sp. OAE497 | 0.87 | ABIE40_RS15665 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.71 | ABIE40_RS08675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 107 |
| Bosea sp. OAE506 | 0.75 | ABIE41_RS09460 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.54 | ABIE41_RS02855 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 77 |
| Phaeobacter inhibens DSM 17395 | 0.67 | PGA1_c21770 | | DNA-binding regulatory protein, YebC/PmpR family | 0.46 | PGA1_65p00250 | | dTDP-4-dehydrorhamnose 3,5-epimerase RfbC | — | — |
| Rhodopseudomonas palustris CGA009 | 0.67 | TX73_005640 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.53 | TX73_000610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.64 | Dshi_2762 | | protein of unknown function DUF28 (RefSeq) | 0.49 | Dshi_4114 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | low | > 64 |
| Azospirillum brasilense Sp245 | 0.61 | AZOBR_RS09035 | | transcriptional regulator | 0.49 | AZOBR_RS33410 | | dTDP-4-dehydrorhamnose 3 5-epimerase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.61 | MPMX19_00695 | | putative transcriptional regulatory protein | 0.50 | MPMX19_06724 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodospirillum rubrum S1H | 0.60 | Rru_A1086 | | hypothetical protein (RefSeq) | 0.54 | Rru_B0038 | | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.59 | CCNA_03352 | | YebC/PmpR transcriptional regulator | 0.45 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.59 | CCNA_03352 | | YebC/PmpR transcriptional regulator | 0.45 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 67 |
| Magnetospirillum magneticum AMB-1 | 0.58 | AMB_RS16265 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.42 | AMB_RS07445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Fusobacterium nucleatum SB010 | 0.47 | HUW76_01460 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.35 | HUW76_01310 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas sp. S08-1 | 0.46 | OH686_19120 | | Probable transcriptional regulatory protein YebC | 0.35 | OH686_14370 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_1407 | | Protein of unknown function DUF28 | 0.38 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_1407 | | Protein of unknown function DUF28 | 0.38 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_1850 | | FIG000859: hypothetical protein YebC | 0.38 | PfGW456L13_399 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_1494 | | DNA-binding regulatory protein, YebC/PmpR family | 0.37 | Psest_4264 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Shewanella loihica PV-4 | 0.45 | Shew_2078 | | hypothetical protein (RefSeq) | 0.39 | Shew_3703 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_18010 | | hypothetical protein | 0.39 | AO356_10050 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_5534 | | FIG000859: hypothetical protein YebC | 0.39 | Pf6N2E2_3880 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.45 | DVU2259 | | conserved hypothetical protein TIGR01033 (TIGR) | 0.39 | DVU0698 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) | low | > 55 |
| Pseudomonas sp. RS175 | 0.44 | PFR28_03415 | | Transcriptional regulatory protein PmpR | 0.38 | PFR28_04892 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas putida KT2440 | 0.44 | PP_1214 | | putative transcriptional regulatory protein | 0.38 | PP_1782 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 96 |
| Escherichia fergusonii Becca | 0.44 | EFB2_02078 | | putative transcriptional regulatory protein YebC | 0.41 | EFB2_01816 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.44 | OHPLBJKB_01864 | | putative transcriptional regulatory protein YebC | 0.44 | OHPLBJKB_01663 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 73 |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_04665 | | putative transcriptional regulatory protein YebC | 0.39 | HEPCGN_03120 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia coli BL21 | 0.44 | ECD_01835 | | UPF0082 family protein | 0.39 | ECD_01944 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.44 | GFF1645 | | FIG000859: hypothetical protein YebC | 0.40 | GFF3890 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | low | > 78 |
| Dickeya dianthicola ME23 | 0.44 | DZA65_RS10510 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.40 | DZA65_RS07120 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.40 | 28 |
| Escherichia coli BW25113 | 0.44 | b1864 | yebC | hypothetical protein (NCBI) | 0.38 | b2038 | rfbC | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | low | > 76 |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS10065 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.39 | DDA3937_RS06745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.44 | MPMX26_01851 | | putative transcriptional regulatory protein YebC | 0.42 | MPMX26_00453 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 36 |
| Desulfovibrio vulgaris Miyazaki F | 0.44 | DvMF_3201 | | hypothetical protein (RefSeq) | 0.44 | DvMF_2692 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | low | > 51 |
| Dickeya dianthicola 67-19 | 0.44 | HGI48_RS10095 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.40 | HGI48_RS06765 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 71 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_0693 | | DNA-binding regulatory protein, YebC/PmpR family | 0.34 | EX28DRAFT_0520 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_640 | | FIG000859: hypothetical protein YebC | 0.39 | Pf1N1B4_1664 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS18160 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.39 | BWI76_RS19055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dechlorosoma suillum PS | 0.43 | Dsui_0489 | | DNA-binding regulatory protein, YebC/PmpR family | 0.35 | Dsui_1951 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_03595 | | hypothetical protein | 0.37 | AO353_11875 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas simiae WCS417 | 0.42 | PS417_22460 | | hypothetical protein | 0.37 | PS417_01320 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Shewanella oneidensis MR-1 | 0.42 | SO2432 | | conserved hypothetical protein TIGR01033 (NCBI ptt file) | 0.29 | SO3160 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) | — | — |
| Rahnella sp. WP5 | 0.42 | EX31_RS11685 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.37 | EX31_RS11510 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 89 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.42 | CA264_01650 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.40 | CA264_15705 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS24100 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.38 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS24100 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.38 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Erwinia tracheiphila SCR3 | 0.41 | LU632_RS13425 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.39 | LU632_RS08865 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 74 |
| Shewanella amazonensis SB2B | 0.41 | Sama_1842 | | hypothetical protein (RefSeq) | 0.41 | Sama_2237 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_1954 | | hypothetical protein (RefSeq) | 0.36 | Shewana3_1382 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | — | — |
| Marinobacter adhaerens HP15 | 0.41 | HP15_2043 | | protein YebC | 0.34 | HP15_p187g51 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 73 |
| Paraburkholderia graminis OAS925 | 0.40 | ABIE53_001546 | | YebC/PmpR family DNA-binding regulatory protein | 0.40 | ABIE53_001139 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_04522 | | DNA-binding regulatory protein, YebC/PmpR family | 0.40 | H281DRAFT_04824 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.40 | HSERO_RS17750 | | transcriptional regulator | 0.38 | HSERO_RS22055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS06410 | | transcriptional regulator | 0.39 | BPHYT_RS04275 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Mycobacterium tuberculosis H37Rv | 0.40 | Rv2603c | | Highly conserved protein | 0.29 | Rv3465 | | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC (dTDP-4-keto-6-deoxyglucose 3,5-epimerase) (dTDP-L-rhamnose synthetase) (thymidine diphospho-4-keto-rhamnose 3,5-epimerase) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS24395 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.40 | QEN71_RS25745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS10990 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.37 | RS_RS03445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS13685 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.37 | RPSI07_RS20600 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS03540 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.37 | RALBFv3_RS12660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS10130 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.37 | UW163_RS00905 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Variovorax sp. OAS795 | 0.38 | ABID97_RS16740 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.39 | ABID97_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Synechococcus elongatus PCC 7942 | 0.38 | Synpcc7942_1017 | | hypothetical protein | 0.41 | Synpcc7942_2098 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 38 |
| Variovorax sp. SCN45 | 0.38 | GFF303 | | Probable transcriptional regulatory protein YebC | 0.40 | GFF6879 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Rhodanobacter denitrificans MT42 | 0.37 | LRK55_RS04700 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.37 | LRK55_RS05430 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.37 | LRK54_RS04920 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.38 | LRK54_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF4523 | | FIG000859: hypothetical protein YebC | 0.41 | GFF1840 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_2422 | | FIG000859: hypothetical protein | 0.42 | Ac3H11_1883 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS05035 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.40 | ABIE51_RS15610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.36 | ABZR88_RS22270 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.44 | ABZR88_RS17420 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.36 | OKGIIK_01830 | tACO1 | YebC/PmpR family DNA-binding transcriptional regulator | 0.39 | OKGIIK_01165 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.34 | Xcc-8004.1434.1 | | FIG000859: hypothetical protein YebC | 0.41 | Xcc-8004.4484.1 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.33 | CA265_RS15330 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.32 | CA265_RS19335 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.32 | HMPREF1078_RS09835 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.46 | HMPREF1078_RS00700 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.31 | Echvi_1239 | | DNA-binding regulatory protein, YebC/PmpR family | 0.38 | Echvi_1151 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.30 | ABZR86_RS10850 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.42 | ABZR86_RS18725 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.30 | ABI39_RS17640 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.44 | ABI39_RS12050 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.30 | HMPREF1058_RS03510 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.43 | HMPREF1058_RS06635 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.29 | BACOVA_02249 | | DNA-binding regulatory protein, YebC/PmpR family | 0.38 | BACOVA_02563 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.29 | BT0627 | | conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file) | 0.43 | BT1338 | | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) | — | — |
| Alteromonas macleodii MIT1002 | 0.29 | MIT1002_00845 | | putative transcriptional regulatory protein YeeN | 0.41 | MIT1002_03559 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Bacteroides stercoris CC31F | 0.27 | HMPREF1181_RS16620 | | YebC/PmpR family DNA-binding transcriptional regulator | 0.42 | HMPREF1181_RS14380 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
Not shown: 20 genomes with orthologs for Atu3727 only; 0 genomes with orthologs for Atu4618 only