Conservation of cofitness between Atu4616 and Atu4615 in Agrobacterium fabrum C58

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu4616 dTDP-4-dehydrorhamnose reductase 1.0 Atu4615 glucose-1-phosphate thymidylyltransferase 0.79 6
Rhizobium sp. OAE497 0.57 ABIE40_RS08665 dTDP-4-dehydrorhamnose reductase 0.76 ABIE40_RS08660 glucose-1-phosphate thymidylyltransferase RfbA low > 107
Rhodopseudomonas palustris CGA009 0.48 TX73_000615 dTDP-4-dehydrorhamnose reductase 0.73 TX73_000620 glucose-1-phosphate thymidylyltransferase RfbA low > 86
Bosea sp. OAE506 0.48 ABIE41_RS02860 dTDP-4-dehydrorhamnose reductase 0.76 ABIE41_RS02865 glucose-1-phosphate thymidylyltransferase RfbA 0.74 1
Shewanella sp. ANA-3 0.46 Shewana3_1381 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.62 Shewana3_1380 glucose-1-phosphate thymidylyltransferase (RefSeq) — —
Sinorhizobium meliloti 1021 0.46 SM_b21327 dTDP-4-dehydrorhamnose reductase 0.63 SM_b21324 glucose-1-phosphate thymidylyltransferase low > 103
Azospirillum sp. SherDot2 0.44 MPMX19_06726 dTDP-4-dehydrorhamnose reductase 0.69 MPMX19_06727 Glucose-1-phosphate thymidylyltransferase 1 — —
Dickeya dadantii 3937 0.44 DDA3937_RS06750 dTDP-4-dehydrorhamnose reductase 0.63 DDA3937_RS06740 glucose-1-phosphate thymidylyltransferase RfbA low > 74
Pseudomonas sp. S08-1 0.43 OH686_14365 dTDP-4-dehydrorhamnose reductase 0.65 OH686_14375 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens SBW25 0.43 PFLU_RS01410 dTDP-4-dehydrorhamnose reductase 0.63 PFLU_RS01420 glucose-1-phosphate thymidylyltransferase RfbA — —
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS01410 dTDP-4-dehydrorhamnose reductase 0.63 PFLU_RS01420 glucose-1-phosphate thymidylyltransferase RfbA — —
Dickeya dianthicola ME23 0.43 DZA65_RS07125 dTDP-4-dehydrorhamnose reductase 0.64 DZA65_RS07115 glucose-1-phosphate thymidylyltransferase RfbA low > 75
Pseudomonas simiae WCS417 0.42 PS417_01315 dTDP-4-dehydrorhamnose reductase 0.64 PS417_01325 glucose-1-phosphate thymidylyltransferase — —
Shewanella loihica PV-4 0.42 Shew_1403 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.63 Shew_1402 glucose-1-phosphate thymidylyltransferase (RefSeq) 0.76 3
Pseudomonas stutzeri RCH2 0.42 Psest_1006 dTDP-4-dehydrorhamnose reductase 0.64 Psest_4263 glucose-1-phosphate thymidylyltransferase, short form — —
Rhodospirillum rubrum S1H 0.42 Rru_B0049 dTDP-4-dehydrorhamnose reductase (NCBI) 0.64 Rru_B0048 Glucose-1-phosphate thymidylyltransferase, long form (NCBI) — —
Pseudomonas sp. RS175 0.42 PFR28_04891 dTDP-4-dehydrorhamnose reductase 0.63 PFR28_04893 Glucose-1-phosphate thymidylyltransferase 2 — —
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_2198 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.64 PfGW456L13_2199 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS20610 dTDP-4-dehydrorhamnose reductase 0.67 RPSI07_RS20605 glucose-1-phosphate thymidylyltransferase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS12650 dTDP-4-dehydrorhamnose reductase 0.67 RALBFv3_RS12655 glucose-1-phosphate thymidylyltransferase — —
Ralstonia solanacearum UW163 0.41 UW163_RS00915 dTDP-4-dehydrorhamnose reductase 0.67 UW163_RS00910 glucose-1-phosphate thymidylyltransferase — —
Ralstonia solanacearum GMI1000 0.41 RS_RS03435 dTDP-4-dehydrorhamnose reductase 0.67 RS_RS03440 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_11870 dTDP-4-dehydrorhamnose reductase 0.63 AO353_11880 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_10055 dTDP-4-dehydrorhamnose reductase 0.63 AO356_10045 glucose-1-phosphate thymidylyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0925 dTDP-4-dehydrorhamnose reductase 0.67 Psyr_0924 Glucose-1-phosphate thymidylyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0925 dTDP-4-dehydrorhamnose reductase 0.67 Psyr_0924 Glucose-1-phosphate thymidylyltransferase — —
Klebsiella michiganensis M5al 0.40 BWI76_RS19050 NAD(P)-dependent oxidoreductase 0.63 BWI76_RS01105 glucose-1-phosphate thymidylyltransferase low > 92
Dickeya dianthicola 67-19 0.40 HGI48_RS06770 dTDP-4-dehydrorhamnose reductase 0.64 HGI48_RS06760 glucose-1-phosphate thymidylyltransferase RfbA low > 71
Acinetobacter radioresistens SK82 0.39 MPMX26_00451 dTDP-4-dehydrorhamnose reductase 0.63 MPMX26_00452 Glucose-1-phosphate thymidylyltransferase 1 low > 36
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.64 Pf6N2E2_3879 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Variovorax sp. OAS795 0.38 ABID97_RS05665 dTDP-4-dehydrorhamnose reductase 0.68 ABID97_RS05670 glucose-1-phosphate thymidylyltransferase RfbA — —
Dinoroseobacter shibae DFL-12 0.38 Dshi_4117 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.59 Dshi_4118 glucose-1-phosphate thymidylyltransferase (RefSeq) 0.78 3
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_342 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.67 Pf1N1B4_1222 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Escherichia fergusonii Becca 0.38 EFB2_01814 dTDP-4-dehydrorhamnose reductase 0.71 EFB2_01815 Glucose-1-phosphate thymidylyltransferase 1 — —
Rahnella sp. WP5 0.38 EX31_RS11505 dTDP-4-dehydrorhamnose reductase 0.66 EX31_RS11520 glucose-1-phosphate thymidylyltransferase RfbA — —
Pseudomonas putida KT2440 0.37 PP_1784 dTDP-4-dehydrorhamnose reductase 0.64 PP_1783 dTDP-glucose pyrophosphorylase — —
Parabacteroides merdae CL09T00C40 0.37 HMPREF1078_RS04150 dTDP-4-dehydrorhamnose reductase 0.59 HMPREF1078_RS00175 glucose-1-phosphate thymidylyltransferase RfbA — —
Paraburkholderia graminis OAS925 0.37 ABIE53_001140 dTDP-4-dehydrorhamnose reductase 0.67 ABIE53_001138 glucose-1-phosphate thymidylyltransferase — —
Escherichia coli BW25113 0.37 b2040 rfbD dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) 0.70 b2039 rfbA glucose-1-phosphate thymidylyltransferase (NCBI) low > 76
Escherichia coli ECOR38 0.37 HEPCGN_03110 rfbD dTDP-4-dehydrorhamnose reductase 0.71 HEPCGN_03115 rfbA glucose-1-phosphate thymidylyltransferase RfbA — —
Acidovorax sp. GW101-3H11 0.37 Ac3H11_1881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.70 Ac3H11_1882 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_04825 dTDP-4-dehydrorhamnose reductase 0.67 H281DRAFT_04823 Glucose-1-phosphate thymidylyltransferase — —
Escherichia coli BL21 0.37 ECD_01946 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit 0.71 ECD_01945 glucose-1-phosphate thymidylyltransferase — —
Variovorax sp. SCN45 0.37 GFF6881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.69 GFF6880 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS08650 dTDP-4-dehydrorhamnose reductase 0.66 ABZR87_RS08655 glucose-1-phosphate thymidylyltransferase RfbA low > 80
Azospirillum brasilense Sp245 0.36 AZOBR_RS33420 dTDP-4-dehydrorhamnose reductase 0.63 AZOBR_RS33425 glucose-1-phosphate thymidylyltransferase 0.54 36
Phocaeicola dorei CL03T12C01 0.36 ABI39_RS13375 dTDP-4-dehydrorhamnose reductase 0.60 ABI39_RS12045 glucose-1-phosphate thymidylyltransferase RfbA low > 72
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS04280 dTDP-4-dehydrorhamnose reductase 0.68 BPHYT_RS04270 glucose-1-phosphate thymidylyltransferase — —
Dechlorosoma suillum PS 0.36 Dsui_1949 dTDP-4-dehydrorhamnose reductase 0.69 Dsui_1950 glucose-1-phosphate thymidylyltransferase, short form — —
Erwinia tracheiphila SCR3 0.36 LU632_RS08855 rfbD dTDP-4-dehydrorhamnose reductase 0.65 LU632_RS08860 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.88 2
Lysobacter sp. OAE881 0.36 ABIE51_RS15605 dTDP-4-dehydrorhamnose reductase 0.64 ABIE51_RS15615 glucose-1-phosphate thymidylyltransferase RfbA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF3888 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.70 GFF3889 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Caulobacter crescentus NA1000 0.35 CCNA_01198 dTDP-4-dehydrorhamnose reductase 0.76 CCNA_01199 glucose-1-phosphate thymidylyltransferase 0.63 3
Bacteroides thetaiotaomicron VPI-5482 0.35 BT1730 putative dTDP-4-dehydrorhamnose reductase (NCBI ptt file) 0.61 BT2017 glucose-1-phosphate thymidylyltransferase (NCBI ptt file) — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS05435 dTDP-4-dehydrorhamnose reductase 0.65 LRK55_RS05425 glucose-1-phosphate thymidylyltransferase RfbA — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS05680 dTDP-4-dehydrorhamnose reductase 0.65 LRK54_RS05670 glucose-1-phosphate thymidylyltransferase RfbA — —
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_01198 dTDP-4-dehydrorhamnose reductase 0.76 CCNA_01199 glucose-1-phosphate thymidylyltransferase low > 67
Castellaniella sp019104865 MT123 0.35 ABCV34_RS02405 dTDP-4-dehydrorhamnose reductase 0.66 ABCV34_RS13015 glucose-1-phosphate thymidylyltransferase RfbA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_01662 dTDP-4-dehydrorhamnose reductase 0.64 OHPLBJKB_04265 Glucose-1-phosphate thymidylyltransferase 2 low > 73
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS18720 dTDP-4-dehydrorhamnose reductase 0.65 ABZR86_RS18730 glucose-1-phosphate thymidylyltransferase RfbA 0.73 6
Bacteroides ovatus ATCC 8483 0.34 BACOVA_04459 dTDP-4-dehydrorhamnose reductase 0.61 BACOVA_01444 glucose-1-phosphate thymidylyltransferase — —
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS25740 dTDP-4-dehydrorhamnose reductase 0.67 QEN71_RS25750 glucose-1-phosphate thymidylyltransferase RfbA — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.33 ABZR88_RS17490 dTDP-4-dehydrorhamnose reductase 0.63 ABZR88_RS17485 glucose-1-phosphate thymidylyltransferase RfbA — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_65p00230 dTDP-4-dehydrorhamnose reductase RfbD 0.62 PGA1_65p00220 glucose-1-phosphate thymidylyltransferase RfbA — —
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.4483.1 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.66 Xcc-8004.4485.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1838 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.71 GFF1839 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS19330 dTDP-4-dehydrorhamnose reductase 0.64 CA265_RS19325 glucose-1-phosphate thymidylyltransferase — —
Shewanella amazonensis SB2B 0.32 Sama_2239 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.61 Sama_2240 glucose-1-phosphate thymidylyltransferase (RefSeq) — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS05590 dTDP-4-dehydrorhamnose reductase 0.64 HMPREF1181_RS08025 glucose-1-phosphate thymidylyltransferase RfbA — —
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS07940 dTDP-4-dehydrorhamnose reductase 0.60 HMPREF1058_RS06630 glucose-1-phosphate thymidylyltransferase RfbA — —
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_01160 rfbD dTDP-4-dehydrorhamnose reductase 0.63 OKGIIK_01170 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.69 42
Alteromonas macleodii MIT1002 0.30 MIT1002_03558 dTDP-4-dehydrorhamnose reductase 0.63 MIT1002_03560 Glucose-1-phosphate thymidylyltransferase 1 — —
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_2099 rfbD dTDP-4-dehydrorhamnose reductase 0.65 Synpcc7942_2101 rfbA glucose-1-phosphate thymidylyltransferase low > 38
Magnetospirillum magneticum AMB-1 0.28 AMB_RS07440 dTDP-4-dehydrorhamnose reductase 0.61 AMB_RS00300 glucose-1-phosphate thymidylyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU1363 rfbD dTDP-4-dehydrorhamnose reductase (TIGR) 0.63 DVU0925 rfbA glucose-1-phosphate thymidylyltransferase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.24 DvMF_0140 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.61 DvMF_1381 glucose-1-phosphate thymidylyltransferase (RefSeq) — —
Mycobacterium tuberculosis H37Rv 0.24 Rv3266c dTDP-6-deoxy-L-lyxo-4-hexulose reductase RmlD (dTDP-rhamnose modification protein) (dTDP-rhamnose biosynthesis protein) (dTDP-rhamnose synthase) 0.58 Rv0334 Alpha-D-glucose-1-phosphate thymidylyltransferase RmlA (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase) — —
Shewanella oneidensis MR-1 0.22 SO1653 rfbD dTDP-4-dehydrorhamnose reductase (NCBI ptt file) 0.63 SO3186 rfbA glucose-1-phosphate-thymidylyltransferase (NCBI ptt file) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.19 CA264_19930 NAD(P)-dependent oxidoreductase 0.63 CA264_17920 glucose-1-phosphate thymidylyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.16 Echvi_1746 dTDP-4-dehydrorhamnose reductase 0.62 Echvi_2361 glucose-1-phosphate thymidylyltransferase, short form — —

Not shown: 3 genomes with orthologs for Atu4616 only; 15 genomes with orthologs for Atu4615 only