| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu1446 | | two component response regulator | 1.0 | Atu0346 | | uridylyltransferase/uridylyl-removing enzyme UTase | 0.57 | 3 |
| Rhizobium sp. OAE497 | 0.95 | ABIE40_RS09090 | | nitrogen regulation protein NR(I) | 0.75 | ABIE40_RS01765 | | [protein-PII] uridylyltransferase | 0.79 | 73 |
| Sinorhizobium meliloti 1021 | 0.93 | SMc01043 | | nitrogen assimilation regulatory protein | 0.72 | SMc01124 | | PII uridylyl-transferase | 0.51 | 4 |
| Rhodopseudomonas palustris CGA009 | 0.75 | TX73_013420 | | nitrogen regulation protein NR(I) | 0.51 | TX73_003060 | | [protein-PII] uridylyltransferase | 0.37 | 34 |
| Bosea sp. OAE506 | 0.73 | ABIE41_RS16785 | | nitrogen regulation protein NR(I) | 0.50 | ABIE41_RS00205 | | [protein-PII] uridylyltransferase | low | > 77 |
| Magnetospirillum magneticum AMB-1 | 0.70 | AMB_RS11950 | | nitrogen regulation protein NR(I) | 0.40 | AMB_RS22650 | | [protein-PII] uridylyltransferase | — | — |
| Azospirillum sp. SherDot2 | 0.69 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | 0.42 | MPMX19_00912 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Azospirillum brasilense Sp245 | 0.69 | AZOBR_RS14430 | | chemotaxis protein CheY | 0.42 | AZOBR_RS02110 | | protein-PII uridylyltransferase | 0.51 | 2 |
| Rhodospirillum rubrum S1H | 0.66 | Rru_A1678 | | Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) | 0.41 | Rru_A3539 | | GlnB (protein PII) uridylyltransferase, GlnD (NCBI) | 0.59 | 38 |
| Caulobacter crescentus NA1000 | 0.56 | CCNA_01815 | | nitrogen assimilation regulatory protein NtrC | 0.37 | CCNA_00013 | | protein-PII uridylyltransferase | 0.93 | 1 |
| Caulobacter crescentus NA1000 Δfur | 0.56 | CCNA_01815 | | nitrogen assimilation regulatory protein NtrC | 0.37 | CCNA_00013 | | protein-PII uridylyltransferase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.49 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | 0.39 | Ga0059261_2737 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | 0.79 | 3 |
| Dinoroseobacter shibae DFL-12 | 0.42 | Dshi_1574 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.37 | Dshi_2833 | | UTP-GlnB uridylyltransferase, GlnD (RefSeq) | — | — |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS22295 | | nitrogen regulation protein NR(I) | 0.21 | ECOLIN_RS00915 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia fergusonii Becca | 0.42 | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | 0.21 | EFB2_03878 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_14040 | glnG | nitrogen regulation protein NR(I) | 0.21 | KEDOAH_17920 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_06240 | glnG | nitrogen regulation protein NR(I) | 0.21 | NOLOHH_02580 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC62 | 0.42 | BNILDI_05290 | glnG | nitrogen regulation protein NR(I) | 0.21 | BNILDI_09090 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC101 | 0.42 | MCAODC_04610 | glnG | nitrogen regulation protein NR(I) | 0.21 | MCAODC_00750 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli BW25113 | 0.42 | b3868 | glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | 0.21 | b0167 | glnD | PII uridylyl-transferase (NCBI) | 0.33 | 7 |
| Escherichia coli BL21 | 0.42 | ECD_03753 | | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein | 0.21 | ECD_00165 | | uridylyltransferase | low | > 60 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_17735 | glnG | nitrogen regulation protein NR(I) | 0.21 | JDDGAC_13830 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_11865 | glnG | nitrogen regulation protein NR(I) | 0.21 | NIAGMN_08085 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Escherichia coli ECRC101 | 0.42 | OKFHMN_14110 | glnG | nitrogen regulation protein NR(I) | 0.21 | OKFHMN_10235 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | 0.21 | EX28DRAFT_3754 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | low | > 76 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | 0.21 | MPMX20_00851 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_04184 | | DNA-binding transcriptional regulator NtrC | 0.21 | OHPLBJKB_03497 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.41 | GFF2220 | | Nitrogen regulation protein NR(I) | 0.21 | GFF55 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | 0.93 | 13 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.21 | BWI76_RS05200 | | bifunctional uridylyltransferase/uridylyl-removing protein | 0.55 | 8 |
| Escherichia coli ECOR38 | 0.41 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | 0.21 | HEPCGN_08185 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | — | — |
| Variovorax sp. SCN45 | 0.41 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | 0.19 | GFF1322 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme | — | — |
| Pantoea sp. MT58 | 0.41 | IAI47_00450 | | nitrogen regulation protein NR(I) | 0.21 | IAI47_15540 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | 0.72 | 65 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS21440 | | nitrogen regulation protein NR(I) | 0.21 | HER17_RS16345 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 75 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_24960 | | nitrogen regulation protein NR(I) | 0.21 | IAI46_20270 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 86 |
| Variovorax sp. OAS795 | 0.41 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | 0.19 | ABID97_RS15665 | | [protein-PII] uridylyltransferase | 0.60 | 3 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_01292 | | DNA-binding transcriptional regulator NtrC | 0.20 | MPMX26_01867 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | 0.64 | 10 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | 0.21 | QEN71_RS06410 | | [protein-PII] uridylyltransferase | low | > 153 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | 0.22 | DZA65_RS05445 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 75 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | 0.22 | HGI48_RS05105 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 71 |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_0258 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | 0.18 | Shewana3_2817 | | PII uridylyl-transferase (RefSeq) | 0.97 | 2 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | 0.22 | DDA3937_RS05105 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | 0.67 | 70 |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | 0.21 | RPSI07_RS17110 | | [protein-PII] uridylyltransferase | low | > 81 |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c14790 | | nitrogen regulation protein NtrC | 0.36 | PGA1_c26750 | | uridylyltransferase GlnD | — | — |
| Rahnella sp. WP5 | 0.40 | EX31_RS15880 | | nitrogen regulation protein NR(I) | 0.21 | EX31_RS13045 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 89 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS12980 | | chemotaxis protein CheY | 0.20 | RR42_RS11885 | | (protein-PII) uridylyltransferase | 0.92 | 2 |
| Shewanella loihica PV-4 | 0.40 | Shew_3561 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | 0.20 | Shew_2637 | | PII uridylyl-transferase (RefSeq) | 0.80 | 7 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_425 | | two-component response regulator NtrC | 0.21 | HP15_1163 | | [protein-PII] uridylyltransferase | low | > 73 |
| Shewanella oneidensis MR-1 | 0.40 | SO4472 | ntrC | nitrogen regulation protein NR(I) (NCBI ptt file) | 0.18 | SO1626 | glnD | protein-P-II uridylyltransferase (NCBI ptt file) | 0.88 | 3 |
| Paraburkholderia graminis OAS925 | 0.40 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | 0.21 | ABIE53_002507 | | [protein-PII] uridylyltransferase | 0.43 | 27 |
| Shewanella amazonensis SB2B | 0.40 | Sama_3427 | | response regulator receiver protein (RefSeq) | 0.19 | Sama_1137 | | PII uridylyl-transferase (RefSeq) | 0.87 | 2 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | 0.23 | Pf6N2E2_3072 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | 0.87 | 2 |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | 0.21 | ABZR87_RS11815 | | [protein-PII] uridylyltransferase | 0.81 | 4 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_09730 | | nitrogen regulation protein NR(I) | 0.23 | AO356_06050 | | protein-PII uridylyltransferase | 0.89 | 2 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS12935 | | chemotaxis protein CheY | 0.21 | BPHYT_RS12150 | | PII uridylyl-transferase | 0.70 | 3 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | 0.21 | H281DRAFT_00608 | | UTP--GlnB (protein PII) uridylyltransferase, GlnD | 0.57 | 2 |
| Pseudomonas simiae WCS417 | 0.40 | PS417_01635 | | nitrogen regulation protein NR(I) | 0.24 | PS417_06200 | | protein-PII uridylyltransferase | 0.86 | 2 |
| Pseudomonas fluorescens SBW25-INTG | 0.40 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.23 | PFLU_RS06265 | | [protein-PII] uridylyltransferase | 0.80 | 2 |
| Pseudomonas fluorescens SBW25 | 0.40 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.23 | PFLU_RS06265 | | [protein-PII] uridylyltransferase | low | > 109 |
| Pseudomonas sp. RS175 | 0.39 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | 0.22 | PFR28_00394 | | Bifunctional uridylyltransferase/uridylyl-removing enzyme | 0.39 | 28 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | 0.24 | Pf1N1B4_3081 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | 0.76 | 2 |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS22135 | glnG | nitrogen regulation protein NR(I) | 0.20 | LU632_RS19980 | glnD | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | low | > 74 |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | 0.22 | Psyr_1341 | | Protein-P-II uridylyltransferase | 0.33 | 65 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | 0.22 | Psyr_1341 | | Protein-P-II uridylyltransferase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_12145 | | nitrogen regulation protein NR(I) | 0.23 | AO353_16450 | | protein-PII uridylyltransferase | 0.81 | 2 |
| Alteromonas macleodii MIT1002 | 0.39 | MIT1002_03186 | | Nitrogen regulation protein NR(I) | 0.19 | MIT1002_01001 | | PII uridylyl-transferase | 0.84 | 15 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_10640 | | nitrogen regulation protein NR(I) | 0.25 | OH686_06495 | | protein-P-II uridylyltransferase | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | 0.23 | PfGW456L13_4711 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | 0.93 | 1 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.39 | GFF5269 | | Nitrogen regulation protein NR(I) | 0.19 | GFF4563 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | low | > 90 |
| Pseudomonas putida KT2440 | 0.39 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | 0.24 | PP_1589 | | uridylyltransferase | 0.80 | 2 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS13000 | | nitrogen regulation protein NR(I) | 0.20 | UW163_RS13695 | | [protein-PII] uridylyltransferase | — | — |
| Pseudomonas stutzeri RCH2 | 0.39 | Psest_3932 | | nitrogen regulation protein NR(I) | 0.24 | Psest_2845 | | [Protein-PII] uridylyltransferase | 0.87 | 2 |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | 0.20 | RALBFv3_RS00365 | | [protein-PII] uridylyltransferase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.39 | CSW01_13865 | | nitrogen regulation protein NR(I) | 0.20 | CSW01_11520 | | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | 0.58 | 2 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS15680 | | chemotaxis protein CheY | 0.21 | HSERO_RS10865 | | PII uridylyl-transferase | 0.87 | 2 |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS06320 | | nitrogen regulation protein NR(I) | 0.20 | RS_RS07035 | | bifunctional uridylyltransferase/uridylyl-removing protein | — | — |
| Dechlorosoma suillum PS | 0.38 | Dsui_1051 | | nitrogen regulation protein NR(I) | 0.20 | Dsui_2696 | | (protein-PII) uridylyltransferase | 0.31 | 40 |
| Rhodanobacter denitrificans MT42 | 0.37 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | 0.19 | LRK55_RS02995 | | [protein-PII] uridylyltransferase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | 0.19 | LRK54_RS03245 | | [protein-PII] uridylyltransferase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.36 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | 0.16 | Xcc-8004.3543.1 | | [Protein-PII] uridylyltransferase (EC 2.7.7.59) | — | — |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS03540 | | nitrogen regulation protein NR(I) | 0.19 | ABCV34_RS04120 | | [protein-PII] uridylyltransferase | low | > 48 |
| Rhodanobacter sp. FW510-T8 | 0.36 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | 0.18 | OKGIIK_10125 | glnD | [protein-PII] uridylyltransferase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | 0.19 | ABZR86_RS21575 | | [protein-PII] uridylyltransferase | 0.81 | 2 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_1993 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.13 | DvMF_0864 | | UTP-GlnB uridylyltransferase, GlnD (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU0110 | ntrC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | 0.15 | DVU1233 | glnD | protein-P-II uridylyltransferase, putative (TIGR) | low | > 55 |
Not shown: 8 genomes with orthologs for Atu1446 only; 3 genomes with orthologs for Atu0346 only