| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS14910 | | polyribonucleotide nucleotidyltransferase | 1.0 | ABZR87_RS02520 | | ABC transporter permease | 0.56 | 6 |
| Ralstonia solanacearum GMI1000 | 0.95 | RS_RS10375 | | polyribonucleotide nucleotidyltransferase | 0.87 | RS_RS14810 | | ABC transporter permease | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.93 | RALBFv3_RS03005 | | polyribonucleotide nucleotidyltransferase | 0.92 | RALBFv3_RS06865 | | ABC transporter permease | low | > 76 |
| Ralstonia solanacearum UW163 | 0.93 | UW163_RS10720 | | polyribonucleotide nucleotidyltransferase | 0.92 | UW163_RS06750 | | ABC transporter permease | — | — |
| Ralstonia solanacearum PSI07 | 0.92 | RPSI07_RS14305 | | polyribonucleotide nucleotidyltransferase | 0.93 | RPSI07_RS10370 | | ABC transporter permease | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.87 | RR42_RS05485 | | polynucleotide phosphorylase/polyadenylase | 0.82 | RR42_RS18935 | | metal-dependent hydrolase | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.80 | BPHYT_RS06600 | | polynucleotide phosphorylase/polyadenylase | 0.69 | BPHYT_RS17730 | | metal-dependent hydrolase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.80 | ABIE53_001586 | | polyribonucleotide nucleotidyltransferase | 0.68 | ABIE53_003705 | | ABC-2 type transport system permease protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.79 | H281DRAFT_04562 | | polyribonucleotide nucleotidyltransferase | 0.69 | H281DRAFT_05648 | | ABC-2 type transport system permease protein | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.79 | QEN71_RS24175 | | polyribonucleotide nucleotidyltransferase | 0.68 | QEN71_RS27885 | | ABC transporter permease | — | — |
| Herbaspirillum seropedicae SmR1 | 0.74 | HSERO_RS08755 | | polynucleotide phosphorylase/polyadenylase | 0.74 | HSERO_RS20365 | | metal-dependent hydrolase | — | — |
| Castellaniella sp019104865 MT123 | 0.73 | ABCV34_RS01240 | | polyribonucleotide nucleotidyltransferase | 0.64 | ABCV34_RS11210 | | ABC transporter permease | — | — |
| Acidovorax sp. GW101-3H11 | 0.72 | Ac3H11_1456 | | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | 0.62 | Ac3H11_4719 | | ABC-type multidrug transport system, permease component | — | — |
| Variovorax sp. OAS795 | 0.72 | ABID97_RS20520 | | polyribonucleotide nucleotidyltransferase | 0.66 | ABID97_RS23180 | | ABC transporter permease | low | > 91 |
| Variovorax sp. SCN45 | 0.72 | GFF4746 | | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | 0.66 | GFF5341 | | Efflux ABC transporter, permease protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.72 | GFF3677 | | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | 0.69 | GFF1318 | | ABC-type multidrug transport system, permease component | — | — |
| Dechlorosoma suillum PS | 0.71 | Dsui_2718 | | polyribonucleotide nucleotidyltransferase | 0.61 | Dsui_1405 | | ABC-type polysaccharide/polyol phosphate export systems, permease component | 0.36 | 47 |
| Shewanella amazonensis SB2B | 0.62 | Sama_0966 | | polynucleotide phosphorylase/polyadenylase (RefSeq) | 0.33 | Sama_0773 | | ABC-type polysaccharide/polyol phosphate export systems permease component (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.61 | Shew_2822 | | polynucleotide phosphorylase/polyadenylase (RefSeq) | 0.32 | Shew_3140 | | ABC-2 type transporter (RefSeq) | — | — |
| Escherichia coli Nissle 1917 | 0.61 | ECOLIN_RS18175 | | polyribonucleotide nucleotidyltransferase | 0.35 | ECOLIN_RS00710 | | ABC transporter permease | low | > 55 |
| Escherichia fergusonii Becca | 0.61 | EFB2_00659 | | Polyribonucleotide nucleotidyltransferase | 0.35 | EFB2_03917 | | Inner membrane transport permease YadH | low | > 86 |
| Escherichia coli BW25113 | 0.61 | b3164 | pnp | polynucleotide phosphorylase/polyadenylase (RefSeq) | 0.35 | b0128 | yadH | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.61 | ECD_03031 | | polynucleotide phosphorylase/polyadenylase | 0.35 | ECD_00127 | | putative ABC transporter permease | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_00536 | | Polyribonucleotide nucleotidyltransferase | 0.35 | OHPLBJKB_03533 | | Inner membrane transport permease YadH | low | > 73 |
| Shewanella oneidensis MR-1 | 0.61 | SO1209 | pnp | polyribonucleotide nucleotidyltransferase (NCBI ptt file) | 0.34 | SO3801 | | ABC transporter, permease protein (NCBI ptt file) | — | — |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_10010 | pnp | polyribonucleotide nucleotidyltransferase | 0.35 | KEDOAH_17725 | yadH | Inner membrane transport permease YadH | — | — |
| Escherichia coli ECRC101 | 0.61 | MCAODC_08660 | pnp | polyribonucleotide nucleotidyltransferase | 0.35 | MCAODC_00945 | yadH | Inner membrane transport permease YadH | low | > 87 |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_15900 | pnp | polyribonucleotide nucleotidyltransferase | 0.35 | NIAGMN_08280 | yadH | Inner membrane transport permease YadH | — | — |
| Escherichia coli ECRC100 | 0.61 | OKFHMN_18140 | pnp | polyribonucleotide nucleotidyltransferase | 0.35 | OKFHMN_10430 | yadH | Inner membrane transport permease YadH | low | > 80 |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_09940 | pnp | polyribonucleotide nucleotidyltransferase | 0.35 | NOLOHH_02775 | yadH | Inner membrane transport permease YadH | low | > 75 |
| Escherichia coli ECOR38 | 0.61 | HEPCGN_17015 | pnp | polyribonucleotide nucleotidyltransferase | 0.35 | HEPCGN_08410 | | Inner membrane transport permease YadH | — | — |
| Escherichia coli ECRC62 | 0.61 | BNILDI_01595 | pnp | polyribonucleotide nucleotidyltransferase | 0.35 | BNILDI_08895 | yadH | Inner membrane transport permease YadH | low | > 75 |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_21765 | pnp | polyribonucleotide nucleotidyltransferase | 0.35 | JDDGAC_14025 | yadH | Inner membrane transport permease YadH | low | > 86 |
| Pantoea sp. MT58 | 0.61 | IAI47_17005 | | polyribonucleotide nucleotidyltransferase | 0.33 | IAI47_15675 | | ABC transporter permease | low | > 76 |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_04068 | | Polyribonucleotide nucleotidyltransferase | 0.34 | MPMX20_00822 | | Inner membrane transport permease YadH | — | — |
| Enterobacter asburiae PDN3 | 0.61 | EX28DRAFT_3213 | | polyribonucleotide nucleotidyltransferase | 0.34 | EX28DRAFT_3725 | | ABC-type polysaccharide/polyol phosphate export systems, permease component | — | — |
| Shewanella sp. ANA-3 | 0.60 | Shewana3_1035 | | polynucleotide phosphorylase/polyadenylase (RefSeq) | 0.35 | Shewana3_0795 | | ABC-2 type transporter (RefSeq) | — | — |
| Erwinia tracheiphila SCR3 | 0.60 | LU632_RS21040 | pnp | polyribonucleotide nucleotidyltransferase | 0.31 | LU632_RS20120 | | ABC transporter permease | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.60 | CSW01_03410 | | polyribonucleotide nucleotidyltransferase | 0.35 | CSW01_03125 | | ABC transporter permease | low | > 62 |
| Serratia liquefaciens MT49 | 0.60 | IAI46_01955 | | polyribonucleotide nucleotidyltransferase | 0.34 | IAI46_21260 | | ABC transporter permease | low | > 86 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS25065 | | polyribonucleotide nucleotidyltransferase | 0.35 | BWI76_RS04970 | | ABC transporter permease | low | > 92 |
| Lysobacter sp. OAE881 | 0.60 | ABIE51_RS08415 | | polyribonucleotide nucleotidyltransferase | 0.38 | ABIE51_RS00695 | | ABC transporter permease | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.60 | GFF1502 | | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | 0.34 | GFF100 | | ABC-type multidrug transport system, permease component | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.60 | MIT1002_01888 | | Polyribonucleotide nucleotidyltransferase | 0.32 | MIT1002_03699 | | Inner membrane transport permease YadH | — | — |
| Dickeya dadantii 3937 | 0.60 | DDA3937_RS03090 | | polyribonucleotide nucleotidyltransferase | 0.33 | DDA3937_RS15970 | | ABC transporter permease | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.60 | HER17_RS18190 | | polyribonucleotide nucleotidyltransferase | 0.33 | HER17_RS05545 | | ABC transporter permease | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.60 | Xcc-8004.2006.1 | | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | 0.37 | Xcc-8004.5048.1 | | permease | — | — |
| Dickeya dianthicola 67-19 | 0.60 | HGI48_RS03260 | | polyribonucleotide nucleotidyltransferase | 0.34 | HGI48_RS16085 | | ABC transporter permease | low | > 71 |
| Dickeya dianthicola ME23 | 0.60 | DZA65_RS03255 | | polyribonucleotide nucleotidyltransferase | 0.34 | DZA65_RS17170 | | ABC transporter permease | low | > 75 |
| Rahnella sp. WP5 | 0.59 | EX31_RS08520 | | polyribonucleotide nucleotidyltransferase | 0.31 | EX31_RS03295 | | ABC transporter permease | low | > 89 |
| Rhodanobacter denitrificans MT42 | 0.59 | LRK55_RS00800 | | polyribonucleotide nucleotidyltransferase | 0.34 | LRK55_RS15515 | | ABC transporter permease | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.59 | LRK54_RS01025 | | polyribonucleotide nucleotidyltransferase | 0.35 | LRK54_RS15760 | | ABC transporter permease | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS06005 | | polyribonucleotide nucleotidyltransferase | 0.35 | ABZR86_RS16405 | | ABC transporter permease | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.58 | Psyr_4176 | | Polyribonucleotide nucleotidyltransferase | 0.33 | Psyr_1631 | | ABC-2 | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.58 | Psyr_4176 | | Polyribonucleotide nucleotidyltransferase | 0.33 | Psyr_1631 | | ABC-2 | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.58 | Pf1N1B4_1156 | | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | 0.32 | Pf1N1B4_475 | | ABC-type multidrug transport system, permease component | — | — |
| Rhodanobacter sp. FW510-T8 | 0.58 | OKGIIK_05870 | pnp | polyribonucleotide nucleotidyltransferase | 0.32 | OKGIIK_16615 | | ABC transporter permease | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.58 | AO356_07390 | | polyribonucleotide nucleotidyltransferase | 0.32 | AO356_20050 | | hypothetical protein | low | > 104 |
| Kangiella aquimarina DSM 16071 | 0.58 | B158DRAFT_0104 | | polyribonucleotide nucleotidyltransferase | 0.34 | B158DRAFT_2038 | | ABC-type polysaccharide/polyol phosphate export systems, permease component | — | — |
| Pseudomonas sp. RS175 | 0.58 | PFR28_00094 | | Polyribonucleotide nucleotidyltransferase | 0.33 | PFR28_03033 | | Inner membrane transport permease YadH | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.58 | PfGW456L13_5084 | | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | 0.34 | PfGW456L13_2081 | | ABC-type multidrug transport system, permease component | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.58 | Pf6N2E2_3349 | | Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) | 0.33 | Pf6N2E2_5928 | | ABC-type multidrug transport system, permease component | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.58 | AO353_05540 | | polyribonucleotide nucleotidyltransferase | 0.34 | AO353_01480 | | hypothetical protein | — | — |
| Pseudomonas putida KT2440 | 0.58 | PP_4708 | | Polyribonucleotide nucleotidyltransferase | 0.35 | PP_1896 | | putative ABC transporter - permease subunit | — | — |
| Pseudomonas stutzeri RCH2 | 0.57 | Psest_0986 | | polyribonucleotide nucleotidyltransferase | 0.31 | Psest_0321 | | Predicted membrane protein | — | — |
| Marinobacter adhaerens HP15 | 0.57 | HP15_3063 | | polynucleotide phosphorylase/polyadenylase | 0.34 | HP15_1462 | | ABC-type multidrug transport system, permease component | — | — |
| Pseudomonas sp. S08-1 | 0.57 | OH686_17165 | | polyribonucleotide nucleotidyltransferase | 0.31 | OH686_22660 | | Uncharacterized efflux ABC transporter, permease protein YadH | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.56 | PFLU_RS25790 | | polyribonucleotide nucleotidyltransferase | 0.34 | PFLU_RS09215 | | ABC transporter permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.56 | PFLU_RS25790 | | polyribonucleotide nucleotidyltransferase | 0.34 | PFLU_RS09215 | | ABC transporter permease | low | > 109 |
| Magnetospirillum magneticum AMB-1 | 0.56 | AMB_RS20820 | | polyribonucleotide nucleotidyltransferase | 0.41 | AMB_RS01590 | | multidrug ABC transporter permease | — | — |
| Pseudomonas simiae WCS417 | 0.56 | PS417_23950 | | polynucleotide phosphorylase/polyadenylase | 0.34 | PS417_09205 | | membrane protein | low | > 88 |
| Azospirillum sp. SherDot2 | 0.56 | MPMX19_02526 | | Polyribonucleotide nucleotidyltransferase | 0.36 | MPMX19_02176 | | Inner membrane transport permease YadH | — | — |
| Azospirillum brasilense Sp245 | 0.56 | AZOBR_RS01385 | | polynucleotide phosphorylase | 0.38 | AZOBR_RS19020 | | multidrug ABC transporter permease | — | — |
| Bosea sp. OAE506 | 0.55 | ABIE41_RS04595 | | polyribonucleotide nucleotidyltransferase | 0.35 | ABIE41_RS06200 | | ABC transporter permease | — | — |
| Rhodospirillum rubrum S1H | 0.55 | Rru_A3785 | | 3' exoribonuclease (NCBI) | 0.39 | Rru_A0640 | | ABC-2 transporter component (NCBI) | — | — |
| Acinetobacter radioresistens SK82 | 0.54 | MPMX26_00275 | | Polyribonucleotide nucleotidyltransferase | 0.29 | MPMX26_02104 | | Inner membrane transport permease YadH | low | > 36 |
| Rhizobium sp. OAE497 | 0.54 | ABIE40_RS00355 | | polyribonucleotide nucleotidyltransferase | 0.31 | ABIE40_RS10760 | | ABC transporter permease | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.54 | Ga0059261_2140 | | polyribonucleotide nucleotidyltransferase | 0.37 | Ga0059261_3203 | | ABC-type multidrug transport system, permease component | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.54 | CCNA_00033 | | polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase | 0.39 | CCNA_02327 | | ABC transporter permease protein | — | — |
| Agrobacterium fabrum C58 | 0.54 | Atu0082 | | polyribonucleotide nucleotidyltransferase | 0.34 | Atu1906 | | ABC transporter, membrane spanning protein | — | — |
| Caulobacter crescentus NA1000 | 0.54 | CCNA_00033 | | polyribonucleotide nucleotidyltransferase/polynucleotide adenylyltransferase | 0.39 | CCNA_02327 | | ABC transporter permease protein | — | — |
| Rhodopseudomonas palustris CGA009 | 0.54 | TX73_002245 | | polyribonucleotide nucleotidyltransferase | 0.33 | TX73_018180 | | ABC transporter permease | — | — |
| Sinorhizobium meliloti 1021 | 0.53 | SMc00324 | | polynucleotide phosphorylase/polyadenylase | 0.34 | SMc04218 | | transport transmembrane protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.53 | Dshi_2997 | | Polyribonucleotide nucleotidyltransferase (RefSeq) | 0.41 | Dshi_2615 | | ABC-2 type transporter (RefSeq) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.52 | A4249_RS13355 | | polyribonucleotide nucleotidyltransferase | 0.41 | A4249_RS11940 | | ABC transporter permease | — | — |
| Phaeobacter inhibens DSM 17395 | 0.51 | PGA1_c33000 | | polyribonucleotide nucleotidyltransferase Pnp | 0.37 | PGA1_c24250 | | inner membrane transport permease | — | — |
Not shown: 16 genomes with orthologs for ABZR87_RS14910 only; 2 genomes with orthologs for ABZR87_RS02520 only