Conservation of cofitness between A4249_RS08425 and A4249_RS09035 in Brevundimonas sp. GW460-12-10-14-LB2

86 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Brevundimonas sp. GW460-12-10-14-LB2 1.0 A4249_RS08425 class I SAM-dependent RNA methyltransferase 1.0 A4249_RS09035 redox-regulated ATPase YchF 0.57 9
Caulobacter crescentus NA1000 0.57 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.83 CCNA_00512 GTP-binding protein, probable translation factor low > 66
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.83 CCNA_00512 GTP-binding protein, probable translation factor low > 67
Bosea sp. OAE506 0.38 ABIE41_RS22255 RNA methyltransferase 0.66 ABIE41_RS11295 redox-regulated ATPase YchF — —
Agrobacterium fabrum C58 0.36 Atu0735 RNA methyltransferase 0.64 Atu2233 GTP-binding protein — —
Rhodopseudomonas palustris CGA009 0.36 TX73_004885 methyltransferase 0.68 TX73_022570 redox-regulated ATPase YchF low > 86
Rhizobium sp. OAE497 0.36 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.64 ABIE40_RS13100 redox-regulated ATPase YchF — —
Dinoroseobacter shibae DFL-12 0.35 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.69 Dshi_0954 GTP-binding protein YchF (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.34 PGA1_c34810 putative RNA methyltransferase 0.68 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD low > 62
Sinorhizobium meliloti 1021 0.32 SMc00974 RNA methyltransferase 0.64 SMc02695 GTP-dependent nucleic acid-binding protein EngD low > 103
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.62 Ga0059261_3227 GTP-binding protein YchF low > 68
Azospirillum brasilense Sp245 0.26 AZOBR_RS01195 RNA methyltransferase 0.63 AZOBR_RS30645 GTP-binding protein YchF — —
Magnetospirillum magneticum AMB-1 0.26 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.62 AMB_RS21985 redox-regulated ATPase YchF — —
Azospirillum sp. SherDot2 0.26 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.62 MPMX19_01641 Ribosome-binding ATPase YchF — —
Rhodospirillum rubrum S1H 0.24 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.62 Rru_A3748 hypothetical protein (NCBI) — —
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 CSW01_10875 redox-regulated ATPase YchF low > 62
Erwinia tracheiphila SCR3 0.17 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 LU632_RS13950 ychF redox-regulated ATPase YchF low > 74
Pectobacterium carotovorum WPP14 0.17 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 HER17_RS10445 redox-regulated ATPase YchF low > 75
Acinetobacter radioresistens SK82 0.17 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 MPMX26_01861 Ribosome-binding ATPase YchF low > 36
Pantoea sp. MT58 0.17 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 IAI47_11310 redox-regulated ATPase YchF low > 76
Serratia liquefaciens MT49 0.17 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 IAI46_10240 redox-regulated ATPase YchF — —
Shewanella oneidensis MR-1 0.16 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.58 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) low > 76
Escherichia coli ECOR38 0.16 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 HEPCGN_24875 ychF redox-regulated ATPase YchF low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.56 GFF2784 GTP-binding and nucleic acid-binding protein YchF low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 OHPLBJKB_02484 Ribosome-binding ATPase YchF low > 73
Escherichia coli BW25113 0.16 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.57 b1203 ychF translation-associated GTPase (NCBI) — —
Shewanella sp. ANA-3 0.16 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.58 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) low > 73
Escherichia coli Nissle 1917 0.16 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 ECOLIN_RS07280 redox-regulated ATPase YchF low > 55
Escherichia coli BL21 0.16 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.56 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.55 Psyr_0941 Conserved hypothetical protein 92 low > 86
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.55 Psyr_0941 Conserved hypothetical protein 92 low > 86
Escherichia fergusonii Becca 0.16 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 EFB2_02724 Ribosome-binding ATPase YchF low > 86
Enterobacter asburiae PDN3 0.16 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.56 EX28DRAFT_0821 GTP-binding protein YchF — —
Escherichia coli ECRC98 0.16 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 JDDGAC_06165 ychF redox-regulated ATPase YchF low > 86
Dickeya dadantii 3937 0.16 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 DDA3937_RS11035 redox-regulated ATPase YchF low > 74
Escherichia coli ECRC62 0.16 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 BNILDI_18805 ychF redox-regulated ATPase YchF low > 75
Shewanella amazonensis SB2B 0.16 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.56 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) low > 62
Escherichia coli ECOR27 0.16 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 NOLOHH_20650 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC101 0.16 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 MCAODC_21850 ychF redox-regulated ATPase YchF low > 87
Escherichia coli ECRC102 0.16 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 NIAGMN_27825 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC99 0.16 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 KEDOAH_25405 ychF redox-regulated ATPase YchF — —
Escherichia coli ECRC100 0.16 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 OKFHMN_28410 ychF redox-regulated ATPase YchF — —
Pseudomonas stutzeri RCH2 0.15 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.55 Psest_1103 GTP-binding protein YchF low > 67
Enterobacter sp. TBS_079 0.15 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 MPMX20_02645 Ribosome-binding ATPase YchF 0.21 80
Kangiella aquimarina DSM 16071 0.15 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.57 B158DRAFT_2052 GTP-binding protein YchF low > 40
Rhodanobacter denitrificans MT42 0.15 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 LRK55_RS03425 redox-regulated ATPase YchF low > 63
Klebsiella michiganensis M5al 0.15 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.56 BWI76_RS17485 GTP-binding protein YchF — —
Rahnella sp. WP5 0.15 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 EX31_RS07380 redox-regulated ATPase YchF low > 89
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 ABZR86_RS22010 redox-regulated ATPase YchF low > 74
Marinobacter adhaerens HP15 0.15 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.56 HP15_704 translation-associated GTPase low > 73
Dickeya dianthicola ME23 0.15 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 DZA65_RS11435 redox-regulated ATPase YchF low > 75
Rhodanobacter sp. FW510-T8 0.14 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 OKGIIK_10565 Ribosome-binding ATPase YchF low > 52
Shewanella loihica PV-4 0.14 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.56 Shew_2919 translation-associated GTPase (RefSeq) low > 60
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 LRK54_RS03675 redox-regulated ATPase YchF low > 59
Pseudomonas sp. S08-1 0.14 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.54 OH686_07965 GTP-binding and nucleic acid-binding protein YchF low > 80
Dechlorosoma suillum PS 0.14 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.57 Dsui_1039 GTP-binding protein YchF — —
Synechococcus elongatus PCC 7942 0.14 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA 0.55 Synpcc7942_0554 ychF translation-associated GTPase 0.58 22
Xanthomonas campestris pv. campestris strain 8004 0.14 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.55 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF low > 74
Dickeya dianthicola 67-19 0.14 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 HGI48_RS10975 redox-regulated ATPase YchF low > 71
Castellaniella sp019104865 MT123 0.14 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 ABCV34_RS09215 redox-regulated ATPase YchF — —
Pseudomonas putida KT2440 0.14 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase low > 96
Hydrogenophaga sp. GW460-11-11-14-LB1 0.14 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.58 GFF630 GTP-binding and nucleic acid-binding protein YchF low > 90
Ralstonia solanacearum IBSBF1503 0.14 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 RALBFv3_RS06570 redox-regulated ATPase YchF low > 76
Ralstonia solanacearum UW163 0.14 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 UW163_RS07055 redox-regulated ATPase YchF — —
Ralstonia sp. UNC404CL21Col 0.14 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 ABZR87_RS02220 redox-regulated ATPase YchF low > 80
Paraburkholderia sabiae LMG 24235 0.14 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 QEN71_RS27600 redox-regulated ATPase YchF low > 153
Ralstonia solanacearum GMI1000 0.13 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 RS_RS14520 redox-regulated ATPase YchF low > 80
Alteromonas macleodii MIT1002 0.13 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 MIT1002_01504 Ribosome-binding ATPase YchF low > 70
Ralstonia solanacearum PSI07 0.13 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 RPSI07_RS10660 redox-regulated ATPase YchF low > 81
Pseudomonas fluorescens SBW25-INTG 0.13 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 PFLU_RS03610 redox-regulated ATPase YchF low > 109
Pseudomonas fluorescens SBW25 0.13 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 PFLU_RS03610 redox-regulated ATPase YchF low > 109
Pseudomonas fluorescens FW300-N1B4 0.13 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.55 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF low > 87
Acidovorax sp. GW101-3H11 0.13 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.57 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF — —
Pseudomonas fluorescens FW300-N2C3 0.13 AO356_19055 23S rRNA methyltransferase 0.55 AO356_16450 GTP-binding protein 0.25 67
Pseudomonas simiae WCS417 0.13 PS417_20155 23S rRNA methyltransferase 0.55 PS417_03560 GTP-binding protein low > 88
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS14825 23S rRNA methyltransferase 0.56 HSERO_RS20405 GTP-binding protein YchF low > 78
Lysobacter sp. OAE881 0.12 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 ABIE51_RS05745 redox-regulated ATPase YchF low > 62
Pseudomonas sp. RS175 0.12 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 PFR28_03664 Ribosome-binding ATPase YchF low > 88
Cupriavidus basilensis FW507-4G11 0.12 RR42_RS13170 23S rRNA methyltransferase 0.58 RR42_RS18365 GTP-binding protein low > 128
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.54 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF low > 87
Paraburkholderia bryophila 376MFSha3.1 0.12 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.58 H281DRAFT_05705 hypothetical protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_02715 23S rRNA methyltransferase 0.55 AO353_14740 GTP-binding protein low > 101
Variovorax sp. SCN45 0.12 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.56 GFF2141 GTP-binding and nucleic acid-binding protein YchF low > 127
Burkholderia phytofirmans PsJN 0.12 BPHYT_RS09125 23S rRNA methyltransferase 0.58 BPHYT_RS17445 GTP-binding protein YchF 0.29 93
Desulfovibrio vulgaris Hildenborough JW710 0.11 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.54 DVU1429 GTP-binding protein (TIGR) low > 55
Mucilaginibacter yixingensis YX-36 DSM 26809 0.11 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 ABZR88_RS14155 redox-regulated ATPase YchF low > 71
Fusobacterium nucleatum SB010 0.09 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 HUW76_08540 redox-regulated ATPase YchF low > 35

Not shown: 1 genomes with orthologs for A4249_RS08425 only; 14 genomes with orthologs for A4249_RS09035 only