| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Desulfovibrio vulgaris Miyazaki F | 1.0 | DvMF_0353 | | diaminopimelate decarboxylase (RefSeq) | 1.0 | DvMF_0882 | | two component transcriptional regulator, winged helix family (RefSeq) | 0.54 | 9 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.75 | DVU1647 | lysA-1 | diaminopimelate decarboxylase (TIGR) | 0.84 | DVU1083 | phoB | phosphate regulon transcriptional regulator PhoB (TIGR) | — | — |
| Marinobacter adhaerens HP15 | 0.56 | HP15_247 | | diaminopimelate decarboxylase | 0.42 | HP15_3354 | | two component transcriptional regulator, winged helix family | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.55 | CSW01_00635 | | diaminopimelate decarboxylase | 0.41 | CSW01_03760 | | phosphate regulon transcriptional regulatory protein PhoB | low | > 62 |
| Pseudomonas fluorescens GW456-L13 | 0.54 | PfGW456L13_845 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.43 | PfGW456L13_762 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_2174 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.44 | Pf1N1B4_2044 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | — | — |
| Shewanella loihica PV-4 | 0.54 | Shew_0322 | | diaminopimelate decarboxylase (RefSeq) | 0.41 | Shew_2749 | | two component transcriptional regulator (RefSeq) | low | > 60 |
| Pseudomonas putida KT2440 | 0.54 | PP_5227 | | diaminopimelate decarboxylase | 0.44 | PP_5320 | | two-component system DNA-binding transcriptional dual response regulator PhoB | low | > 96 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_0390 | | diaminopimelate decarboxylase (RefSeq) | 0.41 | Shewana3_2879 | | two component transcriptional regulator (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_00160 | | Diaminopimelate decarboxylase | 0.41 | MIT1002_00751 | | Phosphate regulon transcriptional regulatory protein PhoB | low | > 70 |
| Shewanella oneidensis MR-1 | 0.54 | SO4309 | lysA | diaminopimelate decarboxylase (NCBI ptt file) | 0.41 | SO1558 | phoB | phosphate regulon response regulator PhoB (NCBI ptt file) | low | > 76 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_0182 | | diaminopimelate decarboxylase | 0.44 | Psyr_5032 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_0182 | | diaminopimelate decarboxylase | 0.44 | Psyr_5032 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | — | — |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_3764 | | diaminopimelate decarboxylase | 0.44 | Psest_3845 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Pseudomonas sp. RS175 | 0.53 | PFR28_04375 | | Diaminopimelate decarboxylase | 0.44 | PFR28_04479 | | Phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.53 | Pf6N2E2_4419 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.44 | Pf6N2E2_4066 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_12740 | | diaminopimelate decarboxylase | 0.44 | AO356_11000 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Pseudomonas sp. S08-1 | 0.53 | OH686_13800 | | diaminopimelate decarboxylase | 0.44 | OH686_13465 | | phosphate regulon transcriptional regulatory protein PhoB | low | > 80 |
| Shewanella amazonensis SB2B | 0.52 | Sama_3250 | | diaminopimelate decarboxylase (RefSeq) | 0.40 | Sama_1074 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_09035 | | diaminopimelate decarboxylase | 0.44 | AO353_09855 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Pseudomonas simiae WCS417 | 0.52 | PS417_27580 | | diaminopimelate decarboxylase | 0.43 | PS417_28035 | | transcriptional regulator PhoB | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.44 | PFLU_RS29725 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS29265 | | diaminopimelate decarboxylase | 0.44 | PFLU_RS29725 | | phosphate regulon transcriptional regulatory protein PhoB | low | > 109 |
| Dechlorosoma suillum PS | 0.52 | Dsui_1182 | | diaminopimelate decarboxylase | 0.41 | Dsui_0863 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS06990 | | diaminopimelate decarboxylase | 0.39 | RALBFv3_RS02125 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS06625 | | diaminopimelate decarboxylase | 0.39 | UW163_RS15435 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Castellaniella sp019104865 MT123 | 0.51 | ABCV34_RS12685 | | diaminopimelate decarboxylase | 0.41 | ABCV34_RS02930 | | response regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS10250 | | diaminopimelate decarboxylase | 0.39 | RPSI07_RS15320 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS14930 | | diaminopimelate decarboxylase | 0.39 | RS_RS07695 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS02640 | | diaminopimelate decarboxylase | 0.39 | ABZR87_RS14075 | | phosphate regulon transcriptional regulator PhoB | low | > 80 |
| Phaeobacter inhibens DSM 17395 | 0.50 | PGA1_c03470 | | diaminopimelate decarboxylase LysA | 0.37 | PGA1_c15730 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS28080 | | diaminopimelate decarboxylase | 0.40 | QEN71_RS15060 | | response regulator | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.49 | RR42_RS19050 | | diaminopimelate decarboxylase | 0.39 | RR42_RS13445 | | chemotaxis protein CheY | — | — |
| Variovorax sp. SCN45 | 0.49 | GFF5315 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.41 | GFF1097 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.49 | TX73_024635 | | diaminopimelate decarboxylase | 0.39 | TX73_024820 | | phosphate regulon transcriptional regulator PhoB | — | — |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_003749 | | diaminopimelate decarboxylase | 0.39 | ABIE53_002990 | | two-component system phosphate regulon response regulator PhoB | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS17930 | | diaminopimelate decarboxylase | 0.39 | BPHYT_RS14120 | | chemotaxis protein CheY | low | > 109 |
| Acinetobacter radioresistens SK82 | 0.49 | MPMX26_02232 | | Diaminopimelate decarboxylase | 0.39 | MPMX26_02958 | | Phosphate regulon transcriptional regulatory protein PhoB | low | > 36 |
| Dinoroseobacter shibae DFL-12 | 0.48 | Dshi_3059 | | diaminopimelate decarboxylase (RefSeq) | 0.39 | Dshi_1538 | | two component transcriptional regulator, winged helix family (RefSeq) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.48 | GFF1341 | | Diaminopimelate decarboxylase (EC 4.1.1.20) | 0.40 | GFF63 | | Phosphate regulon transcriptional regulatory protein PhoB (SphR) | low | > 90 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.48 | H281DRAFT_05606 | | diaminopimelate decarboxylase | 0.39 | H281DRAFT_04416 | | two component transcriptional regulator, winged helix family | — | — |
| Variovorax sp. OAS795 | 0.48 | ABID97_RS23305 | | diaminopimelate decarboxylase | 0.40 | ABID97_RS14620 | | phosphate regulon transcriptional regulator PhoB | — | — |
| Agrobacterium fabrum C58 | 0.48 | Atu3601 | | diaminopimelate decarboxylase | 0.39 | Atu0425 | | two component response regulator | — | — |
| Azospirillum brasilense Sp245 | 0.47 | AZOBR_RS16945 | | diaminopimelate decarboxylase | 0.46 | AZOBR_RS01105 | | PhoB family transcriptional regulator | — | — |
| Sinorhizobium meliloti 1021 | 0.47 | SMc00723 | | diaminopimelate DAP decarboxylase | 0.40 | SMc02140 | | phosphate regulon transcriptional regulatory protein | — | — |
| Rhizobium sp. OAE497 | 0.46 | ABIE40_RS17530 | | diaminopimelate decarboxylase | 0.40 | ABIE40_RS02310 | | phosphate regulon transcriptional regulator PhoB | low | > 107 |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS22725 | | diaminopimelate decarboxylase | 0.42 | AMB_RS06935 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Azospirillum sp. SherDot2 | 0.46 | MPMX19_05819 | | Diaminopimelate decarboxylase | 0.45 | MPMX19_02587 | | Phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Caulobacter crescentus NA1000 | 0.45 | CCNA_02296 | | diaminopimelate decarboxylase | 0.41 | CCNA_00296 | | phosphate regulon response regulator PhoB | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.45 | CCNA_02296 | | diaminopimelate decarboxylase | 0.41 | CCNA_00296 | | phosphate regulon response regulator PhoB | — | — |
| Rhodospirillum rubrum S1H | 0.43 | Rru_A0396 | | Diaminopimelate decarboxylase (NCBI) | 0.43 | Rru_A0603 | | Two component Transcriptional regulator, Winged helix family (NCBI) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.42 | A4249_RS12545 | | diaminopimelate decarboxylase | 0.40 | A4249_RS08970 | | phosphate regulon transcriptional regulator PhoB | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS11485 | | diaminopimelate decarboxylase | 0.40 | LRK54_RS15030 | | phosphate regulon transcriptional regulator PhoB | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.40 | LRK55_RS11215 | | diaminopimelate decarboxylase | 0.40 | LRK55_RS14745 | | phosphate regulon transcriptional regulator PhoB | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.40 | OKGIIK_12375 | lysA | diaminopimelate decarboxylase | 0.39 | OKGIIK_03790 | phoB | phosphate regulon transcriptional regulator PhoB | low | > 52 |
| Bosea sp. OAE506 | 0.39 | ABIE41_RS08740 | | diaminopimelate decarboxylase | 0.39 | ABIE41_RS08910 | | phosphate regulon transcriptional regulator PhoB | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.39 | ABZR86_RS12130 | | diaminopimelate decarboxylase | 0.39 | ABZR86_RS00720 | | phosphate regulon transcriptional regulator PhoB | 0.29 | 55 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS13675 | | diaminopimelate decarboxylase | 0.39 | ABIE51_RS14220 | | phosphate regulon transcriptional regulator PhoB | low | > 62 |
| Sphingomonas koreensis DSMZ 15582 | 0.38 | Ga0059261_2051 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.43 | Ga0059261_3651 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.33 | ABZR88_RS10180 | | diaminopimelate decarboxylase | 0.39 | ABZR88_RS03105 | | response regulator transcription factor | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.32 | HMPREF1058_RS06195 | | diaminopimelate decarboxylase | 0.40 | HMPREF1058_RS07210 | | response regulator transcription factor | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.32 | ABI39_RS19950 | | diaminopimelate decarboxylase | 0.40 | ABI39_RS21085 | | response regulator transcription factor | low | > 72 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.32 | CA264_02390 | | diaminopimelate decarboxylase | 0.36 | CA264_19685 | | DNA-binding response regulator | low | > 74 |
| Parabacteroides merdae CL09T00C40 | 0.32 | HMPREF1078_RS13545 | | diaminopimelate decarboxylase | 0.38 | HMPREF1078_RS09515 | | response regulator transcription factor | low | > 61 |
| Bacteroides stercoris CC31F | 0.31 | HMPREF1181_RS11050 | | diaminopimelate decarboxylase | 0.39 | HMPREF1181_RS04745 | | response regulator transcription factor | low | > 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.31 | CA265_RS09650 | | diaminopimelate decarboxylase | 0.40 | CA265_RS09180 | | DNA-binding response regulator | — | — |
| Bacteroides ovatus ATCC 8483 | 0.31 | BACOVA_00215 | | diaminopimelate decarboxylase | 0.39 | BACOVA_04215 | | response regulator receiver domain protein | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.31 | BT1374 | | diaminopimelate decarboxylase (EC 4.1.1.20) (from data) | 0.39 | BT1482 | | two-component system response regulator (NCBI ptt file) | low | > 81 |
| Synechococcus elongatus PCC 7942 | 0.28 | Synpcc7942_0262 | lysA | diaminopimelate decarboxylase | 0.39 | Synpcc7942_1012 | sphR | two component transcriptional regulator, winged helix family | — | — |
| Mycobacterium tuberculosis H37Rv | 0.24 | Rv1293 | | Diaminopimelate decarboxylase LysA (DAP decarboxylase) | 0.40 | Rv0491 | | Two component sensory transduction protein RegX3 (transcriptional regulatory protein) (probably LuxR-family) | — | — |
| Kangiella aquimarina DSM 16071 | 0.20 | B158DRAFT_0272 | | pyridoxal-dependent decarboxylase, exosortase A system-associated | 0.43 | B158DRAFT_0895 | | phosphate regulon transcriptional regulatory protein PhoB | — | — |
Not shown: 3 genomes with orthologs for DvMF_0353 only; 30 genomes with orthologs for DvMF_0882 only