Conservation of cofitness between BT3843 and BT2161 in Bacteroides thetaiotaomicron VPI-5482

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3843 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) 1.0 BT2161 50S ribosomal protein L9 (NCBI ptt file) 0.44 5
Bacteroides ovatus ATCC 8483 0.98 BACOVA_00336 ATP-dependent Clp protease, ATP-binding subunit ClpX 0.97 BACOVA_03185 ribosomal protein L9 — —
Bacteroides stercoris CC31F 0.90 HMPREF1181_RS07445 ATP-dependent Clp protease ATP-binding subunit ClpX 0.94 HMPREF1181_RS08725 50S ribosomal protein L9 low > 56
Phocaeicola dorei CL03T12C01 0.85 ABI39_RS02325 ATP-dependent Clp protease ATP-binding subunit ClpX 0.91 ABI39_RS00060 50S ribosomal protein L9 — —
Phocaeicola vulgatus CL09T03C04 0.85 HMPREF1058_RS03080 ATP-dependent Clp protease ATP-binding subunit ClpX 0.92 HMPREF1058_RS07635 50S ribosomal protein L9 low > 67
Parabacteroides merdae CL09T00C40 0.76 HMPREF1078_RS17045 ATP-dependent Clp protease ATP-binding subunit ClpX 0.83 HMPREF1078_RS10755 50S ribosomal protein L9 low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.67 CA265_RS04275 ATP-dependent protease ATP-binding subunit ClpX 0.57 CA265_RS02395 50S ribosomal protein L9 — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.66 ABZR88_RS06965 ATP-dependent Clp protease ATP-binding subunit ClpX 0.62 ABZR88_RS05035 50S ribosomal protein L9 — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.65 Echvi_4635 endopeptidase Clp ATP-binding regulatory subunit (clpX) 0.58 Echvi_2386 ribosomal protein L9 — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.63 CA264_01405 ATP-dependent Clp protease ATP-binding subunit ClpX 0.55 CA264_01265 50S ribosomal protein L9 low > 74
Pseudomonas sp. S08-1 0.53 OH686_03640 ATP-dependent Clp protease, ATP-binding subunit ClpX 0.27 OH686_15935 ribosomal protein L9 low > 80
Pseudomonas simiae WCS417 0.53 PS417_17230 Clp protease ATP-binding protein 0.26 PS417_02580 50S ribosomal protein L9 — —
Pseudomonas fluorescens SBW25 0.53 PFLU_RS19165 ATP-dependent Clp protease ATP-binding subunit ClpX 0.26 PFLU_RS02650 50S ribosomal protein L9 low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS19165 ATP-dependent Clp protease ATP-binding subunit ClpX 0.26 PFLU_RS02650 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_3946 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 Pf1N1B4_1398 LSU ribosomal protein L9p — —
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_2553 ATP-dependent Clp protease ATP-binding subunit ClpX 0.31 PfGW456L13_139 LSU ribosomal protein L9p low > 87
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_20180 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 AO353_13225 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_01745 ATP-dependent Clp protease ATP-binding subunit ClpX 0.28 AO356_08585 50S ribosomal protein L9 low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_1748 ATP-dependent Clp protease ATP-binding subunit ClpX 0.28 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas sp. RS175 0.52 PFR28_01229 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 PFR28_05135 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2217 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 Pf6N2E2_3602 LSU ribosomal protein L9p — —
Pseudomonas putida KT2440 0.52 PP_2301 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 PP_4874 50S ribosomal protein L9 — —
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_1748 ATP-dependent Clp protease ATP-binding subunit ClpX 0.28 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas stutzeri RCH2 0.52 Psest_2286 endopeptidase Clp ATP-binding regulatory subunit (clpX) 0.29 Psest_0697 ribosomal protein L9 — —
Synechococcus elongatus PCC 7942 0.52 Synpcc7942_2526 clpX ATP-dependent protease ATP-binding subunit 0.28 Synpcc7942_2559 rplI 50S ribosomal protein L9 low > 38
Mycobacterium tuberculosis H37Rv 0.52 Rv2457c Probable ATP-dependent CLP protease ATP-binding subunit ClpX 0.30 Rv0056 50S ribosomal protein L9 RplI — —
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS21980 ATP-dependent Clp protease ATP-binding subunit ClpX 0.31 QEN71_RS22490 50S ribosomal protein L9 low > 153
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS07325 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 ABZR86_RS08860 50S ribosomal protein L9 — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS09025 Clp protease ATP-binding protein 0.30 RR42_RS12590 50S ribosomal protein L9 — —
Ralstonia solanacearum PSI07 0.51 RPSI07_RS16130 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 RPSI07_RS17575 50S ribosomal protein L9 — —
Ralstonia solanacearum GMI1000 0.51 RS_RS08650 ATP-dependent Clp protease ATP-binding subunit ClpX 0.28 RS_RS06570 50S ribosomal protein L9 — —
Ralstonia solanacearum UW163 0.51 UW163_RS14655 ATP-dependent Clp protease ATP-binding subunit ClpX 0.31 UW163_RS13235 50S ribosomal protein L9 — —
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS01345 ATP-dependent Clp protease ATP-binding subunit ClpX 0.31 RALBFv3_RS15790 50S ribosomal protein L9 — —
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_08035 clpX ATP-dependent Clp protease ATP-binding subunit ClpX 0.35 OKGIIK_09590 rplI 50S ribosomal protein L9 — —
Rhodanobacter denitrificans MT42 0.51 LRK55_RS16455 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 LRK55_RS02290 50S ribosomal protein L9 low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS16730 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 LRK54_RS02535 50S ribosomal protein L9 0.73 49
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS12910 ATP-dependent protease 0.27 HSERO_RS10385 50S ribosomal protein L9 — —
Marinobacter adhaerens HP15 0.51 HP15_2184 ATP-dependent Clp protease ATP-binding subunit ClpX 0.33 HP15_628 50S ribosomal protein L9 — —
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.4047.1 ATP-dependent Clp protease ATP-binding subunit ClpX 0.33 Xcc-8004.3313.1 LSU ribosomal protein L9p — —
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS12790 ATP-dependent Clp protease ATP-binding subunit ClpX 0.30 ABZR87_RS11360 50S ribosomal protein L9 — —
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_00897 ATP-dependent Clp protease ATP-binding subunit ClpX 0.28 H281DRAFT_00792 LSU ribosomal protein L9P — —
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS09455 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 BPHYT_RS08870 50S ribosomal protein L9 — —
Paraburkholderia graminis OAS925 0.51 ABIE53_002116 ATP-dependent Clp protease ATP-binding subunit ClpX 0.28 ABIE53_002008 large subunit ribosomal protein L9 — —
Lysobacter sp. OAE881 0.51 ABIE51_RS14150 ATP-dependent Clp protease ATP-binding subunit ClpX 0.31 ABIE51_RS09230 50S ribosomal protein L9 low > 62
Acinetobacter radioresistens SK82 0.51 MPMX26_00409 ATP-dependent Clp protease ATP-binding subunit ClpX 0.33 MPMX26_01155 50S ribosomal protein L9 low > 36
Variovorax sp. OAS795 0.50 ABID97_RS17595 ATP-dependent Clp protease ATP-binding subunit ClpX 0.26 ABID97_RS10840 50S ribosomal protein L9 low > 91
Variovorax sp. SCN45 0.50 GFF488 ATP-dependent Clp protease ATP-binding subunit ClpX 0.26 GFF2813 LSU ribosomal protein L9p low > 127
Escherichia coli ECRC99 0.50 KEDOAH_19635 clpX ATP-dependent protease ATP-binding subunit ClpX 0.29 KEDOAH_16055 rplI 50S ribosomal protein L9 — —
Fusobacterium nucleatum SB010 0.50 HUW76_01060 ATP-dependent Clp protease ATP-binding subunit ClpX 0.21 HUW76_02105 50S ribosomal protein L9 low > 35
Escherichia fergusonii Becca 0.50 EFB2_03619 ATP-dependent Clp protease ATP-binding subunit ClpX 0.29 EFB2_04332 50S ribosomal protein L9 low > 86
Escherichia coli Nissle 1917 0.50 ECOLIN_RS02630 ATP-dependent protease ATP-binding subunit ClpX 0.29 ECOLIN_RS24390 50S ribosomal protein L9 low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03235 ATP-dependent Clp protease ATP-binding subunit ClpX 0.29 OHPLBJKB_03839 50S ribosomal protein L9 — —
Escherichia coli ECRC98 0.50 JDDGAC_11985 clpX ATP-dependent protease ATP-binding subunit ClpX 0.29 JDDGAC_15740 rplI 50S ribosomal protein L9 — —
Escherichia coli BL21 0.50 ECD_00389 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease 0.29 ECD_04070 50S ribosomal subunit protein L9 low > 60
Escherichia coli BW25113 0.50 b0438 clpX ATP-dependent protease ATP-binding subunit (NCBI) 0.29 b4203 rplI 50S ribosomal protein L9 (NCBI) low > 76
Escherichia coli ECOR38 0.50 HEPCGN_06945 clpX ATP-dependent protease ATP-binding subunit ClpX 0.29 HEPCGN_10330 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC101 0.50 OKFHMN_08330 clpX ATP-dependent protease ATP-binding subunit ClpX 0.29 OKFHMN_12100 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC101 0.50 MCAODC_27555 clpX ATP-dependent protease ATP-binding subunit ClpX 0.29 MCAODC_02615 rplI 50S ribosomal protein L9 — —
Enterobacter sp. TBS_079 0.50 MPMX20_01029 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 MPMX20_00480 50S ribosomal protein L9 low > 85
Escherichia coli ECRC62 0.50 BNILDI_22680 clpX ATP-dependent protease ATP-binding subunit ClpX 0.29 BNILDI_07125 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC102 0.50 NIAGMN_06385 clpX ATP-dependent protease ATP-binding subunit ClpX 0.29 NIAGMN_09950 rplI 50S ribosomal protein L9 — —
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2533 endopeptidase Clp ATP-binding regulatory subunit (clpX) 0.25 EX28DRAFT_3388 ribosomal protein L9 — —
Escherichia coli ECOR27 0.50 NOLOHH_01265 clpX ATP-dependent protease ATP-binding subunit ClpX 0.29 NOLOHH_04360 rplI 50S ribosomal protein L9 — —
Alteromonas macleodii MIT1002 0.50 MIT1002_02759 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 MIT1002_03816 50S ribosomal protein L9 low > 70
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF4354 ATP-dependent Clp protease ATP-binding subunit ClpX 0.28 GFF857 LSU ribosomal protein L9p — —
Shewanella sp. ANA-3 0.50 Shewana3_2660 clpX ATP-dependent protease ATP-binding subunit ClpX (RefSeq) 0.25 Shewana3_0704 rplI 50S ribosomal protein L9 (RefSeq) — —
Shewanella loihica PV-4 0.50 Shew_2507 clpX ATP-dependent protease ATP-binding subunit (RefSeq) 0.29 Shew_3281 rplI 50S ribosomal protein L9 (RefSeq) — —
Acidovorax sp. GW101-3H11 0.50 Ac3H11_936 ATP-dependent Clp protease ATP-binding subunit ClpX 0.25 Ac3H11_1514 LSU ribosomal protein L9p — —
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1037 endopeptidase Clp ATP-binding regulatory subunit (clpX) 0.31 B158DRAFT_2004 LSU ribosomal protein L9P low > 40
Shewanella amazonensis SB2B 0.50 Sama_1225 clpX ATP-dependent protease ATP-binding subunit ClpX (RefSeq) 0.24 Sama_3061 rplI 50S ribosomal protein L9 (RefSeq) — —
Klebsiella michiganensis M5al 0.50 BWI76_RS06530 ATP-dependent Clp protease ATP-binding subunit ClpX 0.24 BWI76_RS02675 50S ribosomal protein L9 — —
Dechlorosoma suillum PS 0.49 Dsui_2197 endopeptidase Clp ATP-binding regulatory subunit ClpX 0.36 Dsui_1992 ribosomal protein L9 low > 51
Rahnella sp. WP5 0.49 EX31_RS22250 ATP-dependent protease ATP-binding subunit ClpX 0.28 EX31_RS08745 50S ribosomal protein L9 low > 89
Shewanella oneidensis MR-1 0.49 SO1795 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX (NCBI ptt file) 0.29 SO3927 rplI ribosomal protein L9 (NCBI ptt file) — —
Erwinia tracheiphila SCR3 0.49 LU632_RS18340 clpX ATP-dependent protease ATP-binding subunit ClpX 0.27 LU632_RS21710 rplI 50S ribosomal protein L9 — —
Pantoea sp. MT58 0.49 IAI47_14650 ATP-dependent protease ATP-binding subunit ClpX 0.28 IAI47_02675 50S ribosomal protein L9 — —
Dickeya dadantii 3937 0.49 DDA3937_RS05645 ATP-dependent protease ATP-binding subunit ClpX 0.29 DDA3937_RS17215 50S ribosomal protein L9 — —
Pectobacterium carotovorum WPP14 0.49 HER17_RS15845 ATP-dependent protease ATP-binding subunit ClpX 0.26 HER17_RS03905 50S ribosomal protein L9 — —
Dickeya dianthicola ME23 0.49 DZA65_RS06015 ATP-dependent protease ATP-binding subunit ClpX 0.29 DZA65_RS18360 50S ribosomal protein L9 — —
Dickeya dianthicola 67-19 0.49 HGI48_RS05690 ATP-dependent protease ATP-binding subunit ClpX 0.29 HGI48_RS17270 50S ribosomal protein L9 — —
Serratia liquefaciens MT49 0.49 IAI46_05015 ATP-dependent protease ATP-binding subunit ClpX 0.28 IAI46_01715 50S ribosomal protein L9 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF4043 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 GFF3928 LSU ribosomal protein L9p low > 90
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_09610 ATP-dependent Clp protease ATP-binding subunit ClpX 0.30 CSW01_01940 50S ribosomal protein L9 — —
Castellaniella sp019104865 MT123 0.48 ABCV34_RS05130 ATP-dependent Clp protease ATP-binding subunit ClpX 0.29 ABCV34_RS02260 50S ribosomal protein L9 — —
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1336 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR) 0.39 DVU0958 rplI ribosomal protein L9 (TIGR) — —
Bifidobacterium breve UCC2003 0.45 BBR_RS14520 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 BBR_RS11595 50S ribosomal protein L9 low > 34

Not shown: 15 genomes with orthologs for BT3843 only; 1 genomes with orthologs for BT2161 only