| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella oneidensis MR-1 | 1.0 | SO2342 | nadA | quinolinate synthetase complex, subunit A (NCBI ptt file) | 1.0 | SO2261 | | RNA methyltransferase, TrmH family, group 1 (NCBI ptt file) | 0.49 | 20 |
| Shewanella sp. ANA-3 | 0.98 | Shewana3_2128 | | quinolinate synthetase (RefSeq) | 0.97 | Shewana3_2283 | | RNA methyltransferase (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.88 | Sama_1712 | | quinolinate synthetase (RefSeq) | 0.79 | Sama_1290 | | RNA methyltransferase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.87 | Shew_1928 | | quinolinate synthetase (RefSeq) | 0.79 | Shew_2320 | | RNA methyltransferase (RefSeq) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.78 | CSW01_09180 | | quinolinate synthase | 0.57 | CSW01_03875 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.77 | MIT1002_01344 | | Quinolinate synthase A | 0.67 | MIT1002_02806 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | — | — |
| Pectobacterium carotovorum WPP14 | 0.75 | HER17_RS14820 | | quinolinate synthase NadA | 0.62 | HER17_RS06005 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 75 |
| Enterobacter asburiae PDN3 | 0.74 | EX28DRAFT_2245 | | quinolinate synthetase (EC 2.5.1.72) | 0.63 | EX28DRAFT_0107 | | RNA methyltransferase, TrmH family, group 1 | low | > 76 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_06380 | | quinolinate synthase NadA | 0.63 | IAI46_19365 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 87 |
| Escherichia fergusonii Becca | 0.73 | EFB2_03356 | | Quinolinate synthase A | 0.63 | EFB2_01358 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | low | > 86 |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS03990 | | quinolinate synthase NadA | 0.63 | ECOLIN_RS14375 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | — | — |
| Dickeya dianthicola 67-19 | 0.73 | HGI48_RS06595 | | quinolinate synthase NadA | 0.61 | HGI48_RS15655 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 71 |
| Enterobacter sp. TBS_079 | 0.73 | MPMX20_01377 | | Quinolinate synthase A | 0.63 | MPMX20_03413 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | low | > 85 |
| Dickeya dianthicola ME23 | 0.73 | DZA65_RS06945 | | quinolinate synthase NadA | 0.61 | DZA65_RS16730 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.73 | GFF4 | | Quinolinate synthetase (EC 2.5.1.72) | 0.63 | GFF2437 | | tRNA:Cm32/Um32 methyltransferase | — | — |
| Escherichia coli ECOR38 | 0.73 | HEPCGN_01515 | nadA | quinolinate synthase NadA | 0.63 | HEPCGN_20750 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 88 |
| Pantoea sp. MT58 | 0.73 | IAI47_13635 | | quinolinate synthase NadA | 0.60 | IAI47_04995 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 76 |
| Escherichia coli BL21 | 0.73 | ECD_00703 | | quinolinate synthase, subunit A | 0.63 | ECD_02424 | | tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli BW25113 | 0.73 | b0750 | nadA | quinolinate synthetase (NCBI) | 0.63 | b2532 | yfhQ | predicted methyltransferase (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.73 | OHPLBJKB_02963 | | Quinolinate synthase A | 0.63 | OHPLBJKB_01177 | | 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11 | low | > 74 |
| Pantoea agglomerans CFBP13505 P0401 | 0.73 | PagCFBP13505_RS03665 | | quinolinate synthase NadA | 0.59 | PagCFBP13505_RS14885 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 74 |
| Dickeya dadantii 3937 | 0.73 | DDA3937_RS06545 | | quinolinate synthase NadA | 0.60 | DDA3937_RS15555 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 74 |
| Escherichia coli ECOR27 | 0.73 | NOLOHH_23190 | nadA | quinolinate synthase NadA | 0.63 | NOLOHH_13280 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 76 |
| Escherichia coli ECRC62 | 0.73 | BNILDI_21185 | nadA | quinolinate synthase NadA | 0.63 | BNILDI_12080 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 75 |
| Escherichia coli ECRC99 | 0.73 | KEDOAH_21205 | nadA | quinolinate synthase NadA | 0.63 | KEDOAH_06610 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | — | — |
| Escherichia coli ECRC101 | 0.73 | MCAODC_25980 | nadA | quinolinate synthase NadA | 0.63 | MCAODC_12140 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 87 |
| Escherichia coli ECRC102 | 0.73 | NIAGMN_04810 | nadA | quinolinate synthase NadA | 0.63 | NIAGMN_19380 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 80 |
| Escherichia coli ECRC100 | 0.73 | OKFHMN_06760 | nadA | quinolinate synthase NadA | 0.63 | OKFHMN_21610 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 79 |
| Escherichia coli ECRC98 | 0.73 | JDDGAC_10415 | nadA | quinolinate synthase NadA | 0.63 | JDDGAC_25285 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 87 |
| Klebsiella michiganensis M5al | 0.72 | BWI76_RS08580 | | quinolinate synthetase | 0.62 | BWI76_RS21170 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.71 | KDGMDA_16840 | | quinolinate synthase NadA | 0.63 | KDGMDA_28295 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 95 |
| Rahnella sp. WP5 | 0.71 | EX31_RS23525 | | quinolinate synthase NadA | 0.66 | EX31_RS20555 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 89 |
| Marinobacter adhaerens HP15 | 0.70 | HP15_2032 | | quinolinate synthetase complex, A subunit | 0.47 | HP15_1484 | | RNA methyltransferase, TrmH family, group 1 | — | — |
| Pseudomonas putida KT2440 | 0.68 | PP_1231 | | quinolinate synthase [4Fe-4S] cluster subunit | 0.49 | PP_0839 | | tRNA Cm32/Um32 methyltransferase | low | > 96 |
| Pseudomonas sp. BP01 | 0.68 | JOY50_RS01740 | nadA | quinolinate synthase NadA | 0.49 | JOY50_RS22835 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 84 |
| Pseudomonas segetis P6 | 0.68 | MPMX49_01696 | | Quinolinate synthase A | 0.47 | MPMX49_01504 | | tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_5553 | | Quinolinate synthetase (EC 2.5.1.72) | 0.48 | Pf6N2E2_3192 | | tRNA:Cm32/Um32 methyltransferase | low | > 103 |
| Pseudomonas sp. RS175 | 0.67 | PFR28_03388 | | Quinolinate synthase A | 0.49 | PFR28_00283 | | 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.67 | AO356_18145 | | quinolinate synthase A | 0.48 | AO356_06660 | | RNA methyltransferase | low | > 104 |
| Pseudomonas sp. DMC3 | 0.67 | GFF5174 | | Quinolinate synthase A | 0.49 | GFF4353 | | tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ | low | > 89 |
| Acinetobacter baumannii LAC-4 | 0.67 | RR41_RS15700 | | quinolinate synthase NadA | 0.39 | RR41_RS11515 | | RNA methyltransferase | low | > 55 |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_1863 | | Quinolinate synthetase (EC 2.5.1.72) | 0.49 | PfGW456L13_4876 | | tRNA:Cm32/Um32 methyltransferase | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.67 | COO64_RS20215 | nadA | quinolinate synthase NadA | 0.46 | COO64_RS03880 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.67 | IKLFDK_04555 | | quinolinate synthase NadA | 0.48 | IKLFDK_19655 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.67 | DY961_RS07460 | nadA;go_function=quinolinate | quinolinate synthase NadA | 0.48 | DY961_RS13835 | trmJ;go_function=RNA | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 100 |
| Pseudomonas fluorescens FW300-N1B4 | 0.67 | Pf1N1B4_626 | | Quinolinate synthetase (EC 2.5.1.72) | 0.48 | Pf1N1B4_868 | | tRNA:Cm32/Um32 methyltransferase | low | > 87 |
| Pseudomonas aeruginosa PUPa3 | 0.67 | DQ20_RS45330 | nadA;go_function=quinolinate | quinolinate synthase NadA | 0.48 | DQ20_RS43265 | trmJ;go_function=RNA | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 101 |
| Pseudomonas fluorescens FW300-N2E3 | 0.67 | AO353_03525 | | quinolinate synthase A | 0.49 | AO353_15820 | | RNA methyltransferase | low | > 101 |
| Kangiella aquimarina DSM 16071 | 0.67 | B158DRAFT_2453 | | quinolinate synthetase (EC 2.5.1.72) | 0.46 | B158DRAFT_1456 | | RNA methyltransferase, TrmH family, group 1 | — | — |
| Pseudomonas stutzeri RCH2 | 0.67 | Psest_1509 | | quinolinate synthetase complex, A subunit | 0.46 | Psest_1248 | | RNA methyltransferase, TrmH family, group 1 | low | > 67 |
| Pseudomonas lactucae CFBP13502 | 0.66 | GEMAOFIL_04613 | | Quinolinate synthase A | 0.49 | GEMAOFIL_04795 | | 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.66 | QF045_RS24510 | | quinolinate synthase NadA | 0.49 | QF045_RS25435 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 93 |
| Pseudomonas sp. S08-1 | 0.66 | OH686_19190 | | quinolinate synthetase complex, A subunit | 0.48 | OH686_17460 | | tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.66 | PFLU_RS24025 | | quinolinate synthase NadA | 0.49 | PFLU_RS24870 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.66 | PFLU_RS24025 | | quinolinate synthase NadA | 0.49 | PFLU_RS24870 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 109 |
| Pseudomonas simiae WCS417 | 0.66 | PS417_22385 | | quinolinate synthase A | 0.49 | PS417_23215 | | RNA methyltransferase | low | > 88 |
| Acinetobacter radioresistens SK82 | 0.65 | MPMX26_02602 | | Quinolinate synthase A | 0.38 | MPMX26_01876 | | tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ | low | > 36 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_1542 | | quinolinate synthetase | 0.49 | Psyr_1234 | | RNA methyltransferase TrmH, group 1 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_1542 | | quinolinate synthetase | 0.49 | Psyr_1234 | | RNA methyltransferase TrmH, group 1 | low | > 86 |
| Ralstonia sp. UNC404CL21Col | 0.64 | ABZR87_RS00355 | | quinolinate synthase NadA | 0.34 | ABZR87_RS10615 | | RNA methyltransferase | low | > 80 |
| Ralstonia solanacearum UW163 | 0.64 | UW163_RS08935 | | quinolinate synthase NadA | 0.33 | UW163_RS12440 | | RNA methyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.64 | RALBFv3_RS04735 | | quinolinate synthase NadA | 0.33 | RALBFv3_RS14970 | | RNA methyltransferase | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS12295 | | quinolinate synthase | 0.36 | RS_RS05785 | | RNA methyltransferase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS12650 | | quinolinate synthase NadA | 0.35 | RPSI07_RS18405 | | RNA methyltransferase | low | > 81 |
| Herbaspirillum seropedicae SmR1 | 0.63 | HSERO_RS11065 | | quinolinate synthetase | 0.38 | HSERO_RS08585 | | RNA methyltransferase | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS15650 | | quinolinate synthetase | 0.36 | BPHYT_RS12460 | | RNA methyltransferase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.63 | ABIE53_003294 | | quinolinate synthase | 0.36 | ABIE53_002713 | | tRNA/rRNA methyltransferase | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.62 | QEN71_RS03060 | | quinolinate synthase NadA | 0.36 | QEN71_RS06100 | | RNA methyltransferase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_04071 | | quinolinate synthetase | 0.37 | H281DRAFT_00540 | | tRNA/rRNA methyltransferase | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.60 | Ac3H11_3837 | | Quinolinate synthetase (EC 2.5.1.72) | 0.27 | Ac3H11_3646 | | tRNA:Cm32/Um32 methyltransferase | low | > 79 |
| Variovorax sp. OAS795 | 0.59 | ABID97_RS07415 | | quinolinate synthase NadA | 0.27 | ABID97_RS20730 | | RNA methyltransferase | low | > 91 |
| Erwinia tracheiphila HP pepo 2.2 | 0.59 | IJEDHG_02045 | nadA | quinolinate synthase NadA | 0.59 | IJEDHG_02880 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | low | > 61 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.59 | GFF1216 | | Quinolinate synthetase (EC 2.5.1.72) | 0.28 | GFF3650 | | tRNA:Cm32/Um32 methyltransferase | — | — |
| Variovorax sp. SCN45 | 0.58 | GFF2575 | | Quinolinate synthetase (EC 2.5.1.72) | 0.28 | GFF4680 | | tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase (EC 2.1.1.200) | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.57 | ABCV34_RS03700 | | quinolinate synthase NadA | 0.31 | ABCV34_RS00355 | | RNA methyltransferase | low | > 48 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS19660 | | quinolinate synthase NadA | 0.22 | AMB_RS10750 | | RNA methyltransferase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_0051 | | quinolinate synthetase (EC 2.5.1.72) | 0.23 | Ga0059261_1984 | | rRNA methylase | — | — |
| Synechococcus elongatus PCC 7942 | 0.33 | Synpcc7942_1448 | nadA | quinolinate synthetase | 0.23 | Synpcc7942_1602 | | RNA methyltransferase TrmH, group 1 | low | > 38 |
| Synechocystis sp000284455 PCC 6803 | 0.32 | SGL_RS17340 | | quinolinate synthase NadA | 0.30 | SGL_RS15835 | | TrmJ/YjtD family RNA methyltransferase | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.23 | LRK55_RS13615 | | quinolinate synthase NadA | 0.34 | LRK55_RS12670 | | RNA methyltransferase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.23 | LRK54_RS13900 | | quinolinate synthase NadA | 0.34 | LRK54_RS12970 | | RNA methyltransferase | low | > 59 |
| Rhodanobacter sp000427505 FW510-R12 | 0.23 | LRK53_RS14710 | | quinolinate synthase NadA | 0.34 | LRK53_RS15630 | | RNA methyltransferase | low | > 59 |
| Rhizobium sp. OAE497 | 0.23 | ABIE40_RS23255 | | quinolinate synthase NadA | 0.24 | ABIE40_RS10270 | | RNA methyltransferase | low | > 107 |
| Rhodanobacter sp. FW510-T8 | 0.22 | OKGIIK_00930 | nadA | quinolinate synthase NadA | 0.35 | OKGIIK_02340 | trmJ | RNA methyltransferase | low | > 53 |
| Sinorhizobium meliloti 1021 | 0.22 | SMc02601 | | quinolinate synthetase | 0.22 | SMc00482 | | hypothetical protein | low | > 103 |
| Xanthobacter sp. DMC5 | 0.22 | GFF1847 | | Quinolinate synthase A | 0.22 | GFF1164 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.22 | A4249_RS00620 | | quinolinate synthase NadA | 0.24 | A4249_RS10425 | | RNA methyltransferase | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c27790 | | quinolinate synthetase A | 0.25 | PGA1_c15100 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | low | > 62 |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_05670 | | Quinolinate synthase A | 0.23 | MPMX19_02031 | | tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ | low | > 112 |
| Caulobacter crescentus NA1000 | 0.22 | CCNA_03006 | | quinolinate synthetase A | 0.25 | CCNA_02605 | | LasT-family rRNA methylase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.22 | CCNA_03006 | | quinolinate synthetase A | 0.25 | CCNA_02605 | | LasT-family rRNA methylase | — | — |
| Agrobacterium fabrum C58 | 0.21 | Atu4098 | | quinolinate synthetase | 0.24 | Atu1868 | | tRNA/rRNA methyltransferase | low | > 89 |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A1434 | | Quinolinate synthetase A (NCBI) | 0.24 | Rru_A0696 | | RNA methyltransferase TrmH, group 1 (NCBI) | low | > 58 |
| Methanococcus maripaludis S2 | 0.20 | MMP_RS06390 | | quinolinate synthase NadA | 0.18 | MMP_RS01780 | | TrmJ/YjtD family RNA methyltransferase | — | — |
| Methanococcus maripaludis JJ | 0.20 | MMJJ_RS07960 | | quinolinate synthase NadA | 0.19 | MMJJ_RS03600 | | TrmJ/YjtD family RNA methyltransferase | low | > 28 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.13 | DVU1808 | nadA | quinolinate synthetase complex, subunit A (TIGR) | 0.25 | DVU2737 | | RNA methyltransferase, TrmH family (TIGR) | — | — |
Not shown: 13 genomes with orthologs for SO2342 only; 11 genomes with orthologs for SO2261 only