| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b2892 | recJ | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | 1.0 | b3961 | oxyR | DNA-binding transcriptional dual regulator (NCBI) | 0.40 | 15 |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_08560 | recJ | single-stranded-DNA-specific exonuclease RecJ | 1.00 | KEDOAH_14595 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23220 | recJ | single-stranded-DNA-specific exonuclease RecJ | 1.00 | JDDGAC_17190 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10100 | recJ | single-stranded-DNA-specific exonuclease RecJ | 1.00 | MCAODC_04065 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC101 | 0.99 | OKFHMN_19580 | recJ | single-stranded-DNA-specific exonuclease RecJ | 1.00 | OKFHMN_13565 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_17345 | recJ | single-stranded-DNA-specific exonuclease RecJ | 1.00 | NIAGMN_11315 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia fergusonii Becca | 0.99 | EFB2_01009 | | Single-stranded-DNA-specific exonuclease RecJ | 1.00 | EFB2_04651 | | Hydrogen peroxide-inducible genes activator | low | > 86 |
| Escherichia coli BL21 | 0.99 | ECD_02724 | | ssDNA exonuclease, 5 | 1.00 | ECD_03846 | | oxidative and nitrosative stress transcriptional regulator | 0.81 | 7 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_11505 | recJ | single-stranded-DNA-specific exonuclease RecJ | 1.00 | NOLOHH_05700 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 57 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS16115 | | single-stranded-DNA-specific exonuclease RecJ | 1.00 | ECOLIN_RS22870 | | DNA-binding transcriptional regulator OxyR | low | > 52 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_00823 | | Single-stranded-DNA-specific exonuclease RecJ | 1.00 | OHPLBJKB_04089 | | Hydrogen peroxide-inducible genes activator | low | > 73 |
| Escherichia coli ECRC62 | 0.99 | BNILDI_10035 | recJ | single-stranded-DNA-specific exonuclease RecJ | 1.00 | BNILDI_05825 | oxyR | DNA-binding transcriptional regulator OxyR | — | — |
| Escherichia coli ECOR38 | 0.99 | HEPCGN_18870 | recJ | single-stranded-DNA-specific exonuclease RecJ | 1.00 | HEPCGN_12210 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.93 | GFF2989 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.96 | GFF2347 | | Hydrogen peroxide-inducible genes activator | low | > 78 |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2943 | | single-stranded-DNA-specific exonuclease RecJ | 0.96 | EX28DRAFT_4424 | | Transcriptional regulator | — | — |
| Klebsiella michiganensis M5al | 0.89 | BWI76_RS23805 | | ssDNA exonuclease RecJ | 0.96 | BWI76_RS00865 | | DNA-binding transcriptional regulator OxyR | low | > 92 |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_03751 | | Single-stranded-DNA-specific exonuclease RecJ | 0.97 | MPMX20_04519 | | Hydrogen peroxide-inducible genes activator | 0.36 | 33 |
| Serratia liquefaciens MT49 | 0.79 | IAI46_20720 | | single-stranded-DNA-specific exonuclease RecJ | 0.89 | IAI46_24475 | | DNA-binding transcriptional regulator OxyR | 0.52 | 31 |
| Pantoea sp. MT58 | 0.77 | IAI47_03830 | | single-stranded-DNA-specific exonuclease RecJ | 0.89 | IAI47_00930 | | DNA-binding transcriptional regulator OxyR | 0.33 | 39 |
| Dickeya dianthicola 67-19 | 0.77 | HGI48_RS03450 | | single-stranded-DNA-specific exonuclease RecJ | 0.90 | HGI48_RS20405 | | DNA-binding transcriptional regulator OxyR | 0.49 | 30 |
| Dickeya dianthicola ME23 | 0.77 | DZA65_RS03495 | | single-stranded-DNA-specific exonuclease RecJ | 0.90 | DZA65_RS21450 | | DNA-binding transcriptional regulator OxyR | low | > 75 |
| Dickeya dadantii 3937 | 0.76 | DDA3937_RS03310 | | single-stranded-DNA-specific exonuclease RecJ | 0.90 | DDA3937_RS00970 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Rahnella sp. WP5 | 0.76 | EX31_RS13470 | | single-stranded-DNA-specific exonuclease RecJ | 0.89 | EX31_RS14170 | | DNA-binding transcriptional regulator OxyR | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.72 | LU632_RS05985 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.87 | LU632_RS19590 | oxyR | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS17880 | | single-stranded-DNA-specific exonuclease RecJ | 0.90 | HER17_RS00955 | | DNA-binding transcriptional regulator OxyR | 0.72 | 50 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_12240 | | single-stranded-DNA-specific exonuclease RecJ | 0.64 | CSW01_13340 | | DNA-binding transcriptional regulator OxyR | low | > 62 |
| Shewanella sp. ANA-3 | 0.58 | Shewana3_3329 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.26 | Shewana3_3046 | | LysR family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.57 | Shew_0772 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.26 | Shew_1035 | | LysR family transcriptional regulator (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.57 | SO0952 | recJ | single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) | 0.26 | SO1328 | | transcriptional regulator, LysR family (NCBI ptt file) | 0.33 | 35 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.57 | Psyr_1298 | | exonuclease RecJ | 0.37 | Psyr_0202 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.57 | Psyr_1298 | | exonuclease RecJ | 0.37 | Psyr_0202 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas simiae WCS417 | 0.57 | PS417_22855 | | ssDNA exonuclease RecJ | 0.36 | PS417_27865 | | LysR family transcriptional regulator | low | > 88 |
| Shewanella amazonensis SB2B | 0.57 | Sama_2737 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.24 | Sama_0860 | | LysR family transcriptional regulator (RefSeq) | low | > 62 |
| Pseudomonas fluorescens SBW25-INTG | 0.56 | PFLU_RS24515 | | single-stranded-DNA-specific exonuclease RecJ | 0.35 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.56 | PFLU_RS24515 | | single-stranded-DNA-specific exonuclease RecJ | 0.35 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_06345 | | single-stranded-DNA-specific exonuclease RecJ | 0.35 | AO356_12385 | | LysR family transcriptional regulator | 0.23 | 51 |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_3137 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.37 | Pf6N2E2_4353 | | Hydrogen peroxide-inducible genes activator | 0.17 | 52 |
| Pseudomonas sp. S08-1 | 0.56 | OH686_06955 | | single-stranded-DNA-specific exonuclease RecJ | 0.36 | OH686_13510 | | Hydrogen peroxide-inducible genes activator | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.56 | Pf1N1B4_3020 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.35 | Pf1N1B4_2106 | | Hydrogen peroxide-inducible genes activator | low | > 87 |
| Pseudomonas putida KT2440 | 0.55 | PP_1477 | | ssDNA-specific exonuclease RecJ | 0.37 | PP_5309 | | oxidative and nitrosative stress transcriptional dual regulator | low | > 96 |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_1730 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.35 | PfGW456L13_773 | | Hydrogen peroxide-inducible genes activator | low | > 87 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_00339 | | Single-stranded-DNA-specific exonuclease RecJ | 0.35 | PFR28_04434 | | Hydrogen peroxide-inducible genes activator | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_04320 | | single-stranded-DNA-specific exonuclease RecJ | 0.34 | AO353_09315 | | LysR family transcriptional regulator | low | > 101 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_00788 | | Single-stranded-DNA-specific exonuclease RecJ | 0.26 | MIT1002_01120 | | Morphology and auto-aggregation control protein | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_1544 | | single-stranded-DNA-specific exonuclease RecJ | 0.37 | Psest_4191 | | Transcriptional regulator | low | > 67 |
| Marinobacter adhaerens HP15 | 0.50 | HP15_766 | | bacterial RecJ exonuclease | 0.34 | HP15_308 | | oxidative stress regulatory protein OxyR | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_2268 | | single-stranded-DNA-specific exonuclease RecJ | 0.35 | B158DRAFT_0567 | | Transcriptional regulator | low | > 40 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS02800 | | single-stranded-DNA-specific exonuclease RecJ | 0.42 | ABZR86_RS19355 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Dechlorosoma suillum PS | 0.44 | Dsui_2860 | | single-stranded-DNA-specific exonuclease RecJ | 0.35 | Dsui_0823 | | transcriptional regulator | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.2909.1 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.43 | Xcc-8004.4224.1 | | Hydrogen peroxide-inducible genes activator | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_02917 | | Single-stranded-DNA-specific exonuclease RecJ | 0.29 | MPMX26_02334 | | Hydrogen peroxide-inducible genes activator | low | > 36 |
| Rhodanobacter sp. FW510-T8 | 0.41 | OKGIIK_06995 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.43 | OKGIIK_01995 | lysR | DNA-binding transcriptional regulator OxyR | low | > 52 |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS06090 | | single-stranded DNA exonuclease | 0.34 | RR42_RS17385 | | LysR family transcriptional regulator | 0.37 | 20 |
| Herbaspirillum seropedicae SmR1 | 0.41 | HSERO_RS13965 | | single-stranded DNA exonuclease | 0.35 | HSERO_RS18935 | | LysR family transcriptional regulator | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS05550 | | single-stranded-DNA-specific exonuclease RecJ | 0.34 | RS_RS13470 | | hydrogen peroxide-inducible genes activator | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS18620 | | single-stranded-DNA-specific exonuclease RecJ | 0.34 | RPSI07_RS11690 | | hydrogen peroxide-inducible genes activator | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_1746 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.32 | Ac3H11_784 | | Hydrogen peroxide-inducible genes activator | — | — |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS12210 | | single-stranded-DNA-specific exonuclease RecJ | 0.34 | UW163_RS08020 | | hydrogen peroxide-inducible genes activator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS14740 | | single-stranded-DNA-specific exonuclease RecJ | 0.34 | RALBFv3_RS05605 | | hydrogen peroxide-inducible genes activator | low | > 76 |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS00315 | | single-stranded-DNA-specific exonuclease RecJ | 0.43 | LRK54_RS04765 | | LysR substrate-binding domain-containing protein | low | > 59 |
| Paraburkholderia sabiae LMG 24235 | 0.41 | QEN71_RS05835 | | single-stranded-DNA-specific exonuclease RecJ | 0.34 | QEN71_RS26625 | | LysR substrate-binding domain-containing protein | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS10395 | | single-stranded-DNA-specific exonuclease RecJ | 0.34 | ABZR87_RS01255 | | LysR substrate-binding domain-containing protein | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_00488 | | exonuclease RecJ | 0.34 | H281DRAFT_04673 | | transcriptional regulator, LysR family | low | > 103 |
| Variovorax sp. OAS795 | 0.40 | ABID97_RS22940 | | single-stranded-DNA-specific exonuclease RecJ | 0.31 | ABID97_RS01570 | | LysR substrate-binding domain-containing protein | 0.42 | 12 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS12730 | | single-stranded DNA exonuclease | 0.33 | BPHYT_RS03470 | | LysR family transcriptional regulator | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_002771 | | single-stranded-DNA-specific exonuclease | 0.33 | ABIE53_000834 | | LysR family hydrogen peroxide-inducible transcriptional activator | low | > 113 |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS05005 | | single-stranded-DNA-specific exonuclease RecJ | 0.36 | ABCV34_RS03575 | | LysR substrate-binding domain-containing protein | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF739 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.30 | GFF2803 | | Hydrogen peroxide-inducible genes activator | — | — |
| Parabacteroides merdae CL09T00C40 | 0.25 | HMPREF1078_RS07725 | | single-stranded-DNA-specific exonuclease RecJ | 0.29 | HMPREF1078_RS01140 | | hydrogen peroxide-inducible genes activator | low | > 61 |
| Rhizobium sp. OAE497 | 0.24 | ABIE40_RS08655 | | single-stranded-DNA-specific exonuclease RecJ | 0.30 | ABIE40_RS29270 | | LysR substrate-binding domain-containing protein | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.24 | BT3939 | | single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) | 0.31 | BT4716 | | redox-sensitive transcriptional activator (NCBI ptt file) | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.24 | ABZR88_RS18635 | | single-stranded-DNA-specific exonuclease RecJ | 0.29 | ABZR88_RS18535 | | hydrogen peroxide-inducible genes activator | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.24 | CA265_RS25225 | | single-stranded-DNA-specific exonuclease RecJ | 0.28 | CA265_RS19680 | | DNA-binding transcriptional regulator OxyR | — | — |
| Phocaeicola dorei CL03T12C01 | 0.24 | ABI39_RS10550 | | single-stranded-DNA-specific exonuclease RecJ | 0.32 | ABI39_RS06075 | | hydrogen peroxide-inducible genes activator | — | — |
| Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_01165 | | single-stranded-DNA-specific exonuclease RecJ | 0.31 | BACOVA_05567 | | LysR substrate binding domain protein | — | — |
| Rhodospirillum rubrum S1H | 0.24 | Rru_A2408 | | RecJ exonuclease (NCBI) | 0.36 | Rru_A0334 | | Transcriptional Regulator, LysR family (NCBI) | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_1332 | | single-stranded-DNA-specific exonuclease RecJ | 0.29 | Echvi_1045 | | Transcriptional regulator | low | > 79 |
| Bacteroides stercoris CC31F | 0.24 | HMPREF1181_RS06545 | | single-stranded-DNA-specific exonuclease RecJ | 0.29 | HMPREF1181_RS02160 | | hydrogen peroxide-inducible genes activator | low | > 56 |
| Agrobacterium fabrum C58 | 0.24 | Atu1586 | | single-stranded-DNA-specific exonuclease | 0.33 | Atu4641 | | LysR family transcriptional regulator | — | — |
| Bosea sp. OAE506 | 0.24 | ABIE41_RS19130 | | single-stranded-DNA-specific exonuclease RecJ | 0.30 | ABIE41_RS01195 | | hydrogen peroxide-inducible genes activator | low | > 77 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.23 | CA264_17545 | | single-stranded-DNA-specific exonuclease RecJ | 0.28 | CA264_13765 | | DNA-binding transcriptional regulator OxyR | low | > 74 |
| Rhodopseudomonas palustris CGA009 | 0.23 | TX73_012960 | | single-stranded-DNA-specific exonuclease RecJ | 0.34 | TX73_002235 | | LysR substrate-binding domain-containing protein | — | — |
| Azospirillum sp. SherDot2 | 0.23 | MPMX19_00667 | | Single-stranded-DNA-specific exonuclease RecJ | 0.37 | MPMX19_04930 | | Hydrogen peroxide-inducible genes activator | — | — |
| Phaeobacter inhibens DSM 17395 | 0.23 | PGA1_c08630 | | single-stranded-DNA-specific exonuclease RecJ | 0.31 | PGA1_78p00040 | | hydrogen peroxide-inducible genes activator OxyR | — | — |
| Magnetospirillum magneticum AMB-1 | 0.23 | AMB_RS18875 | | single-stranded-DNA-specific exonuclease RecJ | 0.30 | AMB_RS03045 | | hydrogen peroxide-inducible genes activator | — | — |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_2275 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.30 | Dshi_0727 | | transcriptional regulator, LysR family (RefSeq) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.21 | Ga0059261_3089 | | single-stranded-DNA-specific exonuclease RecJ | 0.31 | Ga0059261_0159 | | Transcriptional regulator | — | — |
| Sinorhizobium meliloti 1021 | 0.19 | SMc00292 | | single-stranded-DNA-specific exonuclease | 0.34 | SMc00818 | | hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) | — | — |
| Rhodanobacter denitrificans MT42 | 0.17 | LRK55_RS18310 | | DHHA1 domain-containing protein | 0.43 | LRK55_RS04545 | | LysR substrate-binding domain-containing protein | low | > 63 |
Not shown: 4 genomes with orthologs for b2892 only; 5 genomes with orthologs for b3961 only