Conservation of cofitness between b2892 and b3813 in Escherichia coli BW25113

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 1.0 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.52 5
Escherichia coli ECRC101 0.99 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli ECRC98 0.99 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECRC102 0.99 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.99 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.99 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia fergusonii Becca 0.99 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ 1.00 EFB2_04824 DNA helicase II 0.53 19
Escherichia coli BL21 0.99 ECD_02724 ssDNA exonuclease, 5 1.00 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECOR27 0.99 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 NOLOHH_06540 uvrD DNA helicase II low > 57
Escherichia coli Nissle 1917 0.99 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ 1.00 ECOLIN_RS21885 DNA helicase II 0.89 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ 1.00 OHPLBJKB_04237 DNA helicase II low > 73
Escherichia coli ECRC62 0.99 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.99 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 HEPCGN_13115 uvrD DNA helicase II low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.99 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.68 4
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ 0.97 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Klebsiella michiganensis M5al 0.89 BWI76_RS23805 ssDNA exonuclease RecJ 0.98 BWI76_RS01220 DNA-dependent helicase II 0.57 1
Enterobacter sp. TBS_079 0.89 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.97 MPMX20_04463 DNA helicase II low > 85
Serratia liquefaciens MT49 0.79 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.89 IAI46_00735 DNA helicase II 0.65 16
Pantoea sp. MT58 0.77 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ 0.89 IAI47_18390 DNA helicase II 0.37 11
Dickeya dianthicola 67-19 0.77 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ 0.89 HGI48_RS20035 DNA helicase II low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ 0.89 DZA65_RS21080 DNA helicase II low > 75
Rahnella sp. WP5 0.76 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ 0.87 EX31_RS15175 DNA helicase II 0.48 17
Dickeya dadantii 3937 0.76 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ 0.89 DDA3937_RS19880 DNA helicase II low > 74
Erwinia tracheiphila SCR3 0.72 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ 0.90 LU632_RS24125 uvrD DNA helicase II — —
Pectobacterium carotovorum WPP14 0.72 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ 0.91 HER17_RS01360 DNA helicase II low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 0.71 CSW01_01015 DNA helicase II low > 62
Shewanella sp. ANA-3 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.72 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Shewanella loihica PV-4 0.57 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.72 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.57 21
Shewanella oneidensis MR-1 0.57 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.72 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.59 8
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1298 exonuclease RecJ 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1298 exonuclease RecJ 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Shewanella amazonensis SB2B 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.71 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.45 27
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.62 PFLU_RS29900 DNA helicase II 0.34 1
Pseudomonas fluorescens SBW25 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.62 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.62 AO356_11990 DNA helicase II low > 104
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.62 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.27 16
Pseudomonas sp. S08-1 0.56 OH686_06955 single-stranded-DNA-specific exonuclease RecJ 0.60 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.61 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA low > 87
Pseudomonas putida KT2440 0.55 PP_1477 ssDNA-specific exonuclease RecJ 0.62 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex low > 96
Pseudomonas sp. RS175 0.55 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ 0.62 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.62 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.40 2
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.62 AO353_10055 DNA helicase II 0.34 30
Alteromonas macleodii MIT1002 0.53 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ 0.67 MIT1002_00153 DNA helicase II low > 70
Pseudomonas stutzeri RCH2 0.53 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.61 Psest_4098 Superfamily I DNA and RNA helicases low > 67
Marinobacter adhaerens HP15 0.50 HP15_766 bacterial RecJ exonuclease 0.59 HP15_3403 UvrD/REP helicase 0.46 27
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.61 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.83 1
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ 0.59 ABZR86_RS16965 DNA helicase II low > 74
Dechlorosoma suillum PS 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ 0.45 Dsui_1227 DNA/RNA helicase, superfamily I — —
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.57 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ 0.60 OKGIIK_16775 DNA helicase low > 52
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS06090 single-stranded DNA exonuclease 0.42 RR42_RS15090 DNA helicase 0.56 12
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS13965 single-stranded DNA exonuclease 0.43 HSERO_RS02160 DNA-dependent helicase 0.26 73
Ralstonia solanacearum GMI1000 0.41 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ 0.42 RS_RS11220 DNA-dependent helicase low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ 0.41 RPSI07_RS13455 DNA-dependent helicase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ 0.41 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.41 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ 0.41 UW163_RS09895 DNA-dependent helicase — —
Acidovorax sp. GW101-3H11 0.41 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.42 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ 0.59 LRK54_RS06850 DNA helicase II low > 59
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ 0.43 QEN71_RS05110 3'-5' exonuclease — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.42 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00488 exonuclease RecJ 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Variovorax sp. OAS795 0.40 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ 0.42 ABID97_RS09150 UvrD-helicase domain-containing protein 0.40 18
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS12730 single-stranded DNA exonuclease 0.44 BPHYT_RS13840 DNA-dependent helicase — —
Paraburkholderia graminis OAS925 0.39 ABIE53_002771 single-stranded-DNA-specific exonuclease 0.44 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Variovorax sp. SCN45 0.39 GFF6700 Single-stranded-DNA-specific exonuclease RecJ 0.41 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Castellaniella sp019104865 MT123 0.38 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ 0.41 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.41 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ 0.32 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ 0.31 HMPREF1058_RS03305 UvrD-helicase domain-containing protein low > 67
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ 0.31 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Bacteroides ovatus ATCC 8483 0.24 BACOVA_01165 single-stranded-DNA-specific exonuclease RecJ 0.31 BACOVA_02365 UvrD/REP helicase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ 0.34 Echvi_0292 Superfamily I DNA and RNA helicases — —
Rhodospirillum rubrum S1H 0.24 Rru_A2408 RecJ exonuclease (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ 0.31 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bosea sp. OAE506 0.24 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ 0.37 ABIE41_RS12730 UvrD-helicase domain-containing protein low > 77
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_17545 single-stranded-DNA-specific exonuclease RecJ 0.32 CA264_07795 ATP-dependent DNA helicase — —
Azospirillum sp. SherDot2 0.23 MPMX19_00667 Single-stranded-DNA-specific exonuclease RecJ 0.36 MPMX19_01610 ATP-dependent DNA helicase PcrA — —
Phaeobacter inhibens DSM 17395 0.23 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ 0.35 PGA1_c09450 DNA helicase II UvrD — —
Magnetospirillum magneticum AMB-1 0.23 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ 0.35 AMB_RS03725 DNA helicase II — —
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU0904 recJ single-stranded-DNA-specific exonuclease RecJ (TIGR) 0.21 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) 0.31 54
Dinoroseobacter shibae DFL-12 0.21 Dshi_2275 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.35 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3089 single-stranded-DNA-specific exonuclease RecJ 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases — —
Rhodanobacter denitrificans MT42 0.17 LRK55_RS18310 DHHA1 domain-containing protein 0.59 LRK55_RS06595 DNA helicase II — —

Not shown: 7 genomes with orthologs for b2892 only; 6 genomes with orthologs for b3813 only