| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b2903 | gcvP | glycine dehydrogenase (NCBI) | 1.0 | b2951 | yggS | predicted enzyme (NCBI) | 0.47 | 7 |
| Escherichia coli BL21 | 1.00 | ECD_02735 | | glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex | 1.00 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 60 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_09980 | gcvP | aminomethyl-transferring glycine dehydrogenase | 1.00 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC101 | 1.00 | OKFHMN_19530 | gcvP | aminomethyl-transferring glycine dehydrogenase | 1.00 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_23170 | gcvP | aminomethyl-transferring glycine dehydrogenase | 1.00 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_10050 | gcvP | aminomethyl-transferring glycine dehydrogenase | 1.00 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00812 | | Glycine dehydrogenase (decarboxylating) | 1.00 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | low | > 73 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_08610 | gcvP | aminomethyl-transferring glycine dehydrogenase | 1.00 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_17295 | gcvP | aminomethyl-transferring glycine dehydrogenase | 1.00 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS16165 | | aminomethyl-transferring glycine dehydrogenase | 1.00 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | low | > 52 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_18820 | gcvP | aminomethyl-transferring glycine dehydrogenase | 1.00 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | low | > 85 |
| Escherichia fergusonii Becca | 0.99 | EFB2_00999 | | Glycine dehydrogenase (decarboxylating) | 1.00 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_11445 | gcvP | aminomethyl-transferring glycine dehydrogenase | 1.00 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 57 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.92 | GFF3003 | | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | 0.89 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 78 |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_03762 | | Glycine dehydrogenase (decarboxylating) | 0.82 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.34 | 5 |
| Klebsiella michiganensis M5al | 0.89 | BWI76_RS23870 | | Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) | 0.87 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | low | > 92 |
| Enterobacter asburiae PDN3 | 0.88 | EX28DRAFT_2955 | | glycine dehydrogenase (decarboxylating) | 0.87 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | low | > 76 |
| Pantoea sp. MT58 | 0.82 | IAI47_03775 | | aminomethyl-transferring glycine dehydrogenase | 0.69 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Serratia liquefaciens MT49 | 0.82 | IAI46_20850 | | aminomethyl-transferring glycine dehydrogenase | 0.67 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.81 | LU632_RS05915 | gcvP | aminomethyl-transferring glycine dehydrogenase | 0.68 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Rahnella sp. WP5 | 0.81 | EX31_RS21520 | | aminomethyl-transferring glycine dehydrogenase | 0.67 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.80 | HER17_RS17995 | | aminomethyl-transferring glycine dehydrogenase | 0.69 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.49 | 25 |
| Dickeya dadantii 3937 | 0.80 | DDA3937_RS03255 | | aminomethyl-transferring glycine dehydrogenase | 0.72 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Dickeya dianthicola ME23 | 0.80 | DZA65_RS03445 | | aminomethyl-transferring glycine dehydrogenase | 0.73 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Dickeya dianthicola 67-19 | 0.80 | HGI48_RS03400 | | aminomethyl-transferring glycine dehydrogenase | 0.72 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Shewanella amazonensis SB2B | 0.68 | Sama_2719 | | glycine dehydrogenase (RefSeq) | 0.51 | Sama_2477 | | hypothetical protein (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.68 | MIT1002_02971 | | Glycine dehydrogenase [decarboxylating] | 0.50 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | low | > 70 |
| Shewanella oneidensis MR-1 | 0.67 | SO0781 | gcvP | glycine cleavage system P protein (NCBI ptt file) | 0.57 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.67 | Shewana3_3499 | | glycine dehydrogenase (RefSeq) | 0.54 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.66 | Shew_3062 | | glycine dehydrogenase (RefSeq) | 0.54 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | low | > 60 |
| Pseudomonas sp. S08-1 | 0.63 | OH686_11165 | | glycine dehydrogenase | 0.51 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2236 | | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_08720 | | glycine dehydrogenase | 0.48 | AO353_08160 | | hypothetical protein | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_0183 | | glycine dehydrogenase (decarboxylating) | 0.49 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | low | > 67 |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_904 | | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | 0.50 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Pseudomonas putida KT2440 | 0.61 | PP_5192 | | glycine dehydrogenase | 0.48 | PP_5094 | | putative enzyme with PLP binding domain | low | > 96 |
| Dechlorosoma suillum PS | 0.61 | Dsui_2737 | | glycine dehydrogenase, decarboxylating | 0.56 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | low | > 51 |
| Kangiella aquimarina DSM 16071 | 0.58 | B158DRAFT_0545 | | glycine dehydrogenase (decarboxylating) | 0.44 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.58 | CSW01_15330 | | glycine dehydrogenase (decarboxylating) | 0.58 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | low | > 62 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.56 | Psyr_1096 | | glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit | 0.48 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.56 | Psyr_1096 | | glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit | 0.48 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Rhodanobacter denitrificans MT42 | 0.56 | LRK55_RS00260 | | aminomethyl-transferring glycine dehydrogenase | 0.27 | LRK55_RS08955 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 63 |
| Pseudomonas sp. RS175 | 0.56 | PFR28_03383 | | Glycine dehydrogenase (decarboxylating) | 0.48 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_5558 | | Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 103 |
| Dyella japonica UNC79MFTsu3.2 | 0.56 | ABZR86_RS08305 | | aminomethyl-transferring glycine dehydrogenase | 0.28 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_18170 | | glycine dehydrogenase | 0.51 | AO356_13425 | | hypothetical protein | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.56 | PFLU_RS24000 | | aminomethyl-transferring glycine dehydrogenase | 0.50 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.56 | PFLU_RS24000 | | aminomethyl-transferring glycine dehydrogenase | 0.50 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_02409 | | glycine dehydrogenase | 0.51 | H281DRAFT_04680 | | hypothetical protein | low | > 103 |
| Pseudomonas simiae WCS417 | 0.56 | PS417_22360 | | Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) | 0.49 | PS417_26725 | | hypothetical protein | low | > 88 |
| Burkholderia phytofirmans PsJN | 0.56 | BPHYT_RS19330 | | glycine cleavage system P protein (EC 1.4.4.2) (from data) | 0.52 | BPHYT_RS03495 | | hypothetical protein | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_000238 | | glycine dehydrogenase | 0.52 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | low | > 113 |
| Rhodanobacter denitrificans FW104-10B01 | 0.56 | LRK54_RS00520 | | aminomethyl-transferring glycine dehydrogenase | 0.25 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Paraburkholderia sabiae LMG 24235 | 0.55 | QEN71_RS29215 | | aminomethyl-transferring glycine dehydrogenase | 0.52 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.46 | 36 |
| Rhodopseudomonas palustris CGA009 | 0.55 | TX73_019935 | | aminomethyl-transferring glycine dehydrogenase | 0.29 | TX73_014475 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Cupriavidus basilensis FW507-4G11 | 0.55 | RR42_RS20070 | | glycine dehydrogenase | 0.49 | RR42_RS17355 | | hypothetical protein | low | > 128 |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_06740 | gcvP2 | Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain | 0.25 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | low | > 52 |
| Lysobacter sp. OAE881 | 0.55 | ABIE51_RS14345 | | aminomethyl-transferring glycine dehydrogenase | 0.44 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 62 |
| Ralstonia solanacearum IBSBF1503 | 0.55 | RALBFv3_RS08660 | | glycine dehydrogenase (aminomethyl-transferring) | 0.46 | RALBFv3_RS05575 | | YggS family pyridoxal phosphate-dependent enzyme | 0.76 | 51 |
| Ralstonia solanacearum UW163 | 0.55 | UW163_RS04950 | | glycine dehydrogenase (aminomethyl-transferring) | 0.46 | UW163_RS08050 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS08575 | | glycine dehydrogenase (aminomethyl-transferring) | 0.45 | RPSI07_RS11725 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS16510 | | glycine dehydrogenase | 0.47 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.72 | 9 |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS03935 | | aminomethyl-transferring glycine dehydrogenase | 0.48 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Rhizobium sp. OAE497 | 0.54 | ABIE40_RS09950 | | aminomethyl-transferring glycine dehydrogenase | 0.26 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Sinorhizobium meliloti 1021 | 0.54 | SMc02049 | | glycine dehydrogenase | 0.24 | SMc02812 | | hypothetical protein | 0.46 | 50 |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS08835 | | aminomethyl-transferring glycine dehydrogenase | 0.27 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.54 | Xcc-8004.3878.1 | | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | 0.43 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.42 | 15 |
| Variovorax sp. OAS795 | 0.54 | ABID97_RS19655 | | aminomethyl-transferring glycine dehydrogenase | 0.50 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Variovorax sp. SCN45 | 0.54 | GFF6478 | | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | 0.50 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.53 | ABZR88_RS01785 | | aminomethyl-transferring glycine dehydrogenase | 0.29 | ABZR88_RS11740 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Phaeobacter inhibens DSM 17395 | 0.53 | PGA1_78p00310 | | glycine dehydrogenase | 0.25 | PGA1_c33360 | | putative alanine racemase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.53 | Dshi_2680 | | glycine dehydrogenase (RefSeq) | 0.32 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | low | > 64 |
| Synechococcus elongatus PCC 7942 | 0.53 | Synpcc7942_2047 | gcvP | glycine dehydrogenase | 0.26 | Synpcc7942_2060 | ylmE | hypothetical protein | low | > 38 |
| Agrobacterium fabrum C58 | 0.53 | Atu1462 | | glycine cleavage system protein P2 | 0.28 | Atu2747 | | hypothetical protein | 0.72 | 37 |
| Acidovorax sp. GW101-3H11 | 0.52 | Ac3H11_167 | | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | 0.47 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 79 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.52 | CA264_18410 | | glycine dehydrogenase (aminomethyl-transferring) | 0.28 | CA264_06410 | | YggS family pyridoxal phosphate enzyme | 0.31 | 53 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.52 | GFF5215 | | Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) | 0.49 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 90 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.52 | Echvi_0744 | | glycine dehydrogenase (decarboxylating) | 0.25 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | low | > 79 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.51 | CA265_RS25185 | | glycine dehydrogenase (aminomethyl-transferring) | 0.30 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | low | > 88 |
| Mycobacterium tuberculosis H37Rv | 0.50 | Rv1832 | | Probable glycine dehydrogenase GcvB (glycine decarboxylase) (glycine cleavage system P-protein) | 0.22 | Rv2148c | | Conserved protein | — | — |
| Bacteroides ovatus ATCC 8483 | 0.48 | BACOVA_04038 | | glycine dehydrogenase | 0.27 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | low | > 94 |
| Parabacteroides merdae CL09T00C40 | 0.47 | HMPREF1078_RS15115 | | aminomethyl-transferring glycine dehydrogenase | 0.27 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 61 |
| Bacteroides stercoris CC31F | 0.47 | HMPREF1181_RS16815 | | aminomethyl-transferring glycine dehydrogenase | 0.26 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.47 | BT1147 | | glycine dehydrogenase [decarboxylating] (NCBI ptt file) | 0.26 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | low | > 81 |
| Phocaeicola vulgatus CL09T03C04 | 0.46 | HMPREF1058_RS18780 | | aminomethyl-transferring glycine dehydrogenase | 0.25 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.46 | ABI39_RS15100 | | aminomethyl-transferring glycine dehydrogenase | 0.25 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 72 |
Not shown: 0 genomes with orthologs for b2903 only; 16 genomes with orthologs for b2951 only