Conservation of cofitness between b2903 and b2904 in Escherichia coli BW25113

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2903 gcvP glycine dehydrogenase (NCBI) 1.0 b2904 gcvH glycine cleavage system protein H (NCBI) 0.90 2
Escherichia coli ECRC62 1.00 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase 1.00 BNILDI_09975 gcvH glycine cleavage system protein GcvH — —
Escherichia coli BL21 1.00 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex 1.00 ECD_02736 glycine cleavage complex lipoylprotein low > 60
Escherichia coli ECRC102 1.00 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase 1.00 NIAGMN_17290 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC101 1.00 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase 1.00 OKFHMN_19525 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC99 1.00 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase 1.00 KEDOAH_08615 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECRC98 1.00 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase 1.00 JDDGAC_23165 gcvH glycine cleavage system protein GcvH — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) 1.00 OHPLBJKB_00811 Glycine cleavage system H protein 0.66 26
Escherichia coli ECRC101 1.00 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase 1.00 MCAODC_10045 gcvH glycine cleavage system protein GcvH — —
Escherichia coli ECOR38 1.00 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase 0.99 HEPCGN_18815 gcvH glycine cleavage system protein GcvH 0.71 40
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase 1.00 ECOLIN_RS16170 glycine cleavage system protein GcvH 0.57 11
Escherichia fergusonii Becca 0.99 EFB2_00999 Glycine dehydrogenase (decarboxylating) 1.00 EFB2_00998 Glycine cleavage system H protein low > 86
Escherichia coli ECOR27 0.99 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase 1.00 NOLOHH_11440 gcvH glycine cleavage system protein GcvH low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 1.00 GFF3004 Glycine cleavage system H protein low > 78
Enterobacter sp. TBS_079 0.89 MPMX20_03762 Glycine dehydrogenase (decarboxylating) 0.95 MPMX20_03763 Glycine cleavage system H protein 0.74 2
Klebsiella michiganensis M5al 0.89 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.94 BWI76_RS23875 glycine cleavage system protein H 0.64 2
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) 0.96 EX28DRAFT_2956 glycine cleavage system H protein 0.66 11
Pantoea sp. MT58 0.82 IAI47_03775 aminomethyl-transferring glycine dehydrogenase 0.83 IAI47_03770 glycine cleavage system protein GcvH 0.76 1
Serratia liquefaciens MT49 0.82 IAI46_20850 aminomethyl-transferring glycine dehydrogenase 0.78 IAI46_20855 glycine cleavage system protein GcvH 0.52 44
Erwinia tracheiphila SCR3 0.81 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase 0.78 LU632_RS05910 gcvH glycine cleavage system protein GcvH low > 74
Rahnella sp. WP5 0.81 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase 0.77 EX31_RS21515 glycine cleavage system protein GcvH 0.49 2
Pectobacterium carotovorum WPP14 0.80 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase 0.78 HER17_RS18000 glycine cleavage system protein GcvH low > 75
Dickeya dadantii 3937 0.80 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase 0.73 DDA3937_RS03250 glycine cleavage system protein GcvH low > 74
Dickeya dianthicola ME23 0.80 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase 0.79 DZA65_RS03440 glycine cleavage system protein GcvH low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase 0.79 HGI48_RS03395 glycine cleavage system protein GcvH low > 71
Shewanella amazonensis SB2B 0.68 Sama_2719 glycine dehydrogenase (RefSeq) 0.81 Sama_2720 glycine cleavage system protein H (RefSeq) 0.96 2
Alteromonas macleodii MIT1002 0.68 MIT1002_02971 Glycine dehydrogenase [decarboxylating] 0.72 MIT1002_02972 Glycine cleavage system H protein 0.91 6
Shewanella oneidensis MR-1 0.67 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) 0.79 SO0780 gcvH glycine cleavage system H protein (NCBI ptt file) 0.93 2
Shewanella sp. ANA-3 0.67 Shewana3_3499 glycine dehydrogenase (RefSeq) 0.79 Shewana3_3500 glycine cleavage system protein H (RefSeq) 0.91 2
Shewanella loihica PV-4 0.66 Shew_3062 glycine dehydrogenase (RefSeq) 0.78 Shew_3063 glycine cleavage system protein H (RefSeq) 0.52 48
Pseudomonas sp. S08-1 0.63 OH686_11165 glycine dehydrogenase 0.64 OH686_11170 glycine cleavage system H protein 0.68 33
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.56 Pf1N1B4_2235 Glycine cleavage system H protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_08720 glycine dehydrogenase 0.57 AO353_08730 glycine cleavage system protein H low > 101
Pseudomonas stutzeri RCH2 0.62 Psest_0183 glycine dehydrogenase (decarboxylating) 0.62 Psest_0182 glycine cleavage system H protein low > 67
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.62 PfGW456L13_903 Glycine cleavage system H protein low > 87
Pseudomonas putida KT2440 0.61 PP_5192 glycine dehydrogenase 0.66 PP_5193 glycine cleavage system H protein 2 low > 96
Dechlorosoma suillum PS 0.61 Dsui_2737 glycine dehydrogenase, decarboxylating 0.63 Dsui_2736 glycine cleavage system H protein low > 51
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0545 glycine dehydrogenase (decarboxylating) 0.63 B158DRAFT_0544 glycine cleavage system H protein — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.60 CSW01_15335 glycine cleavage system protein H low > 62
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.61 Psyr_0247 glycine cleavage system H protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit 0.61 Psyr_0247 glycine cleavage system H protein low > 86
Rhodanobacter denitrificans MT42 0.56 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase 0.56 LRK55_RS05275 glycine cleavage system protein GcvH low > 63
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.66 Pf6N2E2_4486 Glycine cleavage system H protein low > 103
Pseudomonas sp. RS175 0.56 PFR28_03383 Glycine dehydrogenase (decarboxylating) 0.61 PFR28_04315 Glycine cleavage system H protein low > 88
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase 0.60 ABZR86_RS18880 glycine cleavage system protein GcvH 0.97 2
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_18170 glycine dehydrogenase 0.63 AO356_13040 glycine cleavage system protein H low > 104
Pseudomonas fluorescens SBW25 0.56 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.62 PFLU_RS28910 glycine cleavage system protein GcvH low > 109
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase 0.62 PFLU_RS28910 glycine cleavage system protein GcvH low > 109
Pseudomonas simiae WCS417 0.56 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.63 PS417_27250 glycine cleavage system protein H low > 88
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_02409 glycine dehydrogenase 0.59 H281DRAFT_02410 glycine cleavage system H protein 0.64 2
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) 0.59 BPHYT_RS19325 glycine cleavage system H protein 0.35 81
Paraburkholderia graminis OAS925 0.56 ABIE53_000238 glycine dehydrogenase 0.61 ABIE53_000237 glycine cleavage system H protein 0.45 34
Rhodanobacter denitrificans FW104-10B01 0.56 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase 0.56 LRK54_RS05505 glycine cleavage system protein GcvH 0.71 2
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase 0.57 QEN71_RS29210 glycine cleavage system protein GcvH 0.77 2
Rhodopseudomonas palustris CGA009 0.55 TX73_019935 aminomethyl-transferring glycine dehydrogenase 0.45 TX73_019930 glycine cleavage system protein GcvH 0.86 2
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS20070 glycine dehydrogenase 0.58 RR42_RS20065 glycine cleavage system protein H low > 128
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 0.60 OKGIIK_01310 gcvH glycine cleavage system protein GcvH low > 52
Lysobacter sp. OAE881 0.55 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase 0.56 ABIE51_RS16360 glycine cleavage system protein GcvH 0.78 5
Ralstonia solanacearum UW163 0.55 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring) 0.55 UW163_RS04955 glycine cleavage system protein H — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring) 0.55 RALBFv3_RS08655 glycine cleavage system protein H low > 76
Ralstonia solanacearum PSI07 0.55 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring) 0.55 RPSI07_RS08580 glycine cleavage system protein H low > 81
Ralstonia solanacearum GMI1000 0.54 RS_RS16510 glycine dehydrogenase 0.56 RS_RS16505 glycine cleavage system protein H low > 80
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase 0.53 ABZR87_RS03930 glycine cleavage system protein GcvH low > 80
Rhizobium sp. OAE497 0.54 ABIE40_RS09950 aminomethyl-transferring glycine dehydrogenase 0.50 ABIE40_RS09945 glycine cleavage system protein GcvH 0.87 2
Sinorhizobium meliloti 1021 0.54 SMc02049 glycine dehydrogenase 0.51 SMc02048 glycine cleavage system protein H 0.94 2
Castellaniella sp019104865 MT123 0.54 ABCV34_RS08835 aminomethyl-transferring glycine dehydrogenase 0.52 ABCV34_RS08840 glycine cleavage system protein GcvH 0.92 24
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.3878.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.57 Xcc-8004.1568.1 Glycine cleavage system H protein low > 74
Variovorax sp. OAS795 0.54 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase 0.53 ABID97_RS19650 glycine cleavage system protein GcvH — —
Variovorax sp. SCN45 0.54 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.54 GFF6477 Glycine cleavage system H protein — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.53 ABZR88_RS01785 aminomethyl-transferring glycine dehydrogenase 0.47 ABZR88_RS00300 glycine cleavage system protein GcvH — —
Phaeobacter inhibens DSM 17395 0.53 PGA1_78p00310 glycine dehydrogenase 0.50 PGA1_c05560 glycine cleavage system protein GcvH — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_2680 glycine dehydrogenase (RefSeq) 0.46 Dshi_2681 glycine cleavage system H protein (RefSeq) — —
Synechococcus elongatus PCC 7942 0.53 Synpcc7942_2047 gcvP glycine dehydrogenase 0.44 Synpcc7942_2046 gcsH glycine cleavage system protein H 0.76 6
Agrobacterium fabrum C58 0.53 Atu1462 glycine cleavage system protein P2 0.54 Atu1463 glycine cleavage system component H 0.96 2
Acidovorax sp. GW101-3H11 0.52 Ac3H11_167 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.56 Ac3H11_166 Glycine cleavage system H protein low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_18410 glycine dehydrogenase (aminomethyl-transferring) 0.46 CA264_14555 glycine cleavage system protein H — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF5215 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.52 GFF5214 Glycine cleavage system H protein low > 90
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_0744 glycine dehydrogenase (decarboxylating) 0.42 Echvi_4084 glycine cleavage system H protein low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS25185 glycine dehydrogenase (aminomethyl-transferring) 0.47 CA265_RS18980 glycine cleavage system protein H — —
Mycobacterium tuberculosis H37Rv 0.50 Rv1832 Probable glycine dehydrogenase GcvB (glycine decarboxylase) (glycine cleavage system P-protein) 0.51 Rv1826 Probable glycine cleavage system H protein GcvH — —
Bacteroides ovatus ATCC 8483 0.48 BACOVA_04038 glycine dehydrogenase 0.53 BACOVA_01614 glycine cleavage system H protein low > 94
Parabacteroides merdae CL09T00C40 0.47 HMPREF1078_RS15115 aminomethyl-transferring glycine dehydrogenase 0.47 HMPREF1078_RS05930 glycine cleavage system protein GcvH low > 61
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS16815 aminomethyl-transferring glycine dehydrogenase 0.51 HMPREF1181_RS00935 glycine cleavage system protein GcvH 0.71 7
Bacteroides thetaiotaomicron VPI-5482 0.47 BT1147 glycine dehydrogenase [decarboxylating] (NCBI ptt file) 0.53 BT2519 putative glycine cleavage system H protein (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS18780 aminomethyl-transferring glycine dehydrogenase 0.51 HMPREF1058_RS12495 glycine cleavage system protein GcvH 0.83 3
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS15100 aminomethyl-transferring glycine dehydrogenase 0.51 ABI39_RS04240 glycine cleavage system protein GcvH low > 72

Not shown: 0 genomes with orthologs for b2903 only; 15 genomes with orthologs for b2904 only