Homologs of PP_4714 from Pseudomonas putida KT2440

ribosome maturation factor
SEED: FIG000325: clustered with transcription termination protein NusA
KEGG: ribosome maturation factor RimP

Top 100 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Pseudomonas putida KT2440	PP_4714		ribosome maturation factor	no data	100	100
o	Pseudomonas sp. S08-1	OH686_17135		Bacterial ribosome SSU maturation protein RimP	no data	81	100
o	Pseudomonas sp. BP01	JOY50_RS26825	rimP	ribosome maturation factor RimP	no data	97	90
o	Pseudomonas aeruginosa MRSN321	DY961_RS09475	rimP;go_process=ribosomal	ribosome maturation factor RimP	no data	84	90
o	Pseudomonas aeruginosa PA14	IKLFDK_29870		ribosome maturation factor RimP	no data	84	90
o	Pseudomonas aeruginosa PUPa3	DQ20_RS52560	rimP;go_process=ribosomal	ribosome maturation factor RimP	no data	84	90
o	Pseudomonas sp. SVBP6	COO64_RS15180	rimP	ribosome maturation factor RimP	no data	91	90
o	Pseudomonas segetis P6	ACVTMO_RS05945	rimP	ribosome maturation factor RimP	no data	82	90
o	Pseudomonas stutzeri RCH2	Psest_0979		Uncharacterized protein conserved in bacteria	no data	81	90
o	Pseudomonas sp. RS175	PFR28_00088		Ribosome maturation factor RimP	no data	87	93
o	Pseudomonas syringae pv. syringae B728a	Psyr_4182		Protein of unknown function DUF150	no data	87	93
o	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_4182		Protein of unknown function DUF150	no data	87	93
o	Pseudomonas fluorescens SBW25	PFLU_RS25820		ribosome maturation factor RimP	no data	80	100
o	Pseudomonas fluorescens SBW25-INTG	PFLU_RS25820		ribosome maturation factor RimP	no data	80	100
o	Pseudomonas lactucae CFBP13502	GEMAOFIL_04947		Ribosome maturation factor RimP	no data	84	93
o	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_3355		FIG000325: clustered with transcription termination protein NusA	no data	86	90
o	Pseudomonas fluorescens FW300-N2C3	AO356_07420		ribosome maturation protein RimP	no data	86	90
o	Pseudomonas fluorescens GW456-L13	PfGW456L13_5090		FIG000325: clustered with transcription termination protein NusA	no data	85	90
o	Pseudomonas sp. DMC3	GFF4986		Ribosome maturation factor RimP	no data	84	90
o	Pseudomonas fluorescens FW300-N2E3	AO353_05570		ribosome maturation protein RimP	no data	84	90
o	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_1163		FIG000325: clustered with transcription termination protein NusA	no data	83	90
o	Pseudomonas orientalis W4I3	QF045_RS26235		ribosome maturation factor RimP	no data	82	90
o	Pseudomonas simiae WCS417	PS417_23980		ribosome maturation protein RimP	no data	82	90
o	Marinobacter adhaerens HP15	HP15_3069		protein belonging to uncharacterized protein family UPF0090	no data	66	90
o	Shewanella loihica PV-4	Shew_2829		hypothetical protein (RefSeq)	no data	60	88
o	Shewanella amazonensis SB2B	Sama_0959		hypothetical protein (RefSeq)	no data	57	86
o	Shewanella oneidensis MR-1	SO1202		conserved hypothetical protein (NCBI ptt file)	no data	56	86
o	Shewanella sp. ANA-3	Shewana3_1028		hypothetical protein (RefSeq)	no data	55	86
o	Alteromonas macleodii MIT1002	MIT1002_01769		Ribosome maturation factor RimP	no data	54	87
o	Kangiella aquimarina DSM 16071	B158DRAFT_0112		Uncharacterized protein conserved in bacteria	strong	51	85
o	Dickeya dadantii 3937	DDA3937_RS03060		ribosome maturation factor RimP	no data	49	88
o	Escherichia coli BL21	ECD_03037		ribosome maturation factor for 30S subunits	strong	49	88
o	Escherichia fergusonii Becca	EFB2_00653		Ribosome maturation factor RimP	no data	49	88
o	Escherichia coli ECOR27	NOLOHH_09900	rimP	ribosome maturation factor RimP	no data	49	88
o	Escherichia coli ECOR38	HEPCGN_16975	rimP	ribosome maturation factor RimP	no data	49	88
o	Escherichia coli ECRC100	OKFHMN_18100	rimP	ribosome maturation factor RimP	no data	49	88
o	Escherichia coli ECRC101	MCAODC_08620	rimP	ribosome maturation factor RimP	no data	49	88
o	Escherichia coli ECRC102	NIAGMN_15860	rimP	ribosome maturation factor RimP	no data	49	88
o	Escherichia coli ECRC62	BNILDI_01635	rimP	ribosome maturation factor RimP	no data	49	88
o	Escherichia coli ECRC98	JDDGAC_21725	rimP	ribosome maturation factor RimP	no data	49	88
o	Escherichia coli ECRC99	KEDOAH_10050	rimP	ribosome maturation factor RimP	no data	49	88
	Escherichia coli Nissle 1917	ECOLIN_RS18205		ribosome maturation factor RimP	no data	49	88
	Escherichia coli Nissle 1917	ECOLIN_RS18225		ribosome maturation factor RimP	no data	49	88
	Escherichia coli Nissle 1917	ECOLIN_RS18245		ribosome maturation factor RimP	no data	49	88
o	Escherichia coli Nissle 1917	ECOLIN_RS18265		ribosome maturation factor RimP	no data	49	88
o	Enterobacter asburiae PDN3	EX28DRAFT_3221		Uncharacterized protein conserved in bacteria	no data	49	88
o	Enterobacter sp. TBS_079	MPMX20_04075		Ribosome maturation factor RimP	no data	49	88
o	Escherichia coli BW25113	b3170	rimP	conserved protein (RefSeq)	no data	49	88
o	Erwinia amylovora T8	OLJFJH_07230		ribosome maturation factor RimP	no data	49	88
o	Dickeya dianthicola 67-19	HGI48_RS03230		ribosome maturation factor RimP	no data	48	88
o	Dickeya dianthicola ME23	DZA65_RS03225		ribosome maturation factor RimP	no data	48	88
o	Pantoea sp. MT58	IAI47_17035		ribosome maturation factor RimP	sig.	49	88
o	Pantoea agglomerans CFBP13505 P0401	PagCFBP13505_RS09130		ribosome maturation factor RimP	strong	49	88
o	Klebsiella michiganensis M5al	BWI76_RS25100		ribosome maturation factor	no data	47	88
o	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_00530		Ribosome maturation factor RimP	no data	50	83
o	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF1496		FIG000325: clustered with transcription termination protein NusA	no data	50	83
o	Erwinia tracheiphila SCR3	LU632_RS21070	rimP	ribosome maturation factor RimP	no data	49	88
o	Erwinia tracheiphila HP pepo 2.2	IJEDHG_13925	rimP	ribosome maturation factor RimP	no data	49	88
o	Lysobacter sp. OAE881	ABIE51_RS08385		ribosome maturation factor RimP	no data	48	89
o	Rahnella sp. WP5	EX31_RS08550		ribosome maturation factor RimP	no data	47	88
o	Klebsiella pneumoniae MKP103	KDGMDA_05910		ribosome maturation factor RimP	no data	48	83
o	Serratia liquefaciens MT49	IAI46_01925		ribosome maturation factor RimP	no data	46	88
o	Vibrio cholerae E7946 ATCC 55056	CSW01_03380		ribosome maturation factor RimP	no data	49	86
o	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.2000.1		FIG000325: clustered with transcription termination protein NusA	no data	50	89
o	Pectobacterium carotovorum WPP14	HER17_RS18220		ribosome maturation factor RimP	no data	45	88
o	Dyella japonica UNC79MFTsu3.2	ABZR86_RS06035		ribosome maturation factor RimP	no data	46	81
o	Acinetobacter baumannii LAC-4	RR41_RS17310		ribosome maturation factor RimP	no data	45	89
o	Acinetobacter radioresistens SK82	MPMX26_00252		Ribosome maturation factor RimP	strong	45	89
o	Rhodanobacter sp. FW510-T8	OKGIIK_05840	rimP	ribosome maturation protein RimP	insig.	43	81
o	Rhodanobacter sp000427505 FW510-R12	LRK53_RS09060		ribosome maturation factor RimP	no data	42	81
	Rhodanobacter denitrificans MT42	LRK55_RS00830		ribosome maturation factor RimP	no data	42	79
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS01055		ribosome maturation factor RimP	no data	42	79
o	Dinoroseobacter shibae DFL-12	Dshi_3560		protein of unknown function DUF150 (RefSeq)	no data	40	93
o	Azospirillum brasilense Sp245	AZOBR_RS01420		ribosome maturation factor RimP	no data	38	89
o	Magnetospirillum magneticum AMB-1	AMB_RS20595		ribosome maturation factor	cofit	41	84
	Phaeobacter inhibens DSM 17395	PGA1_c34650		UPF0090 protein YhbC	strong	45	74
	Rhodopseudomonas palustris CGA009	TX73_002280		ribosome maturation factor RimP	sig.	41	82
	Xanthobacter sp. DMC5	GFF2298		Ribosome maturation factor RimP	no data	41	73
	Azospirillum sp. SherDot2	MPMX19_02519		Ribosome maturation factor RimP	no data	40	77
o	Burkholderia phytofirmans PsJN	BPHYT_RS08060		ribosome maturation factor RimP	strong	40	86
o	Dechlorosoma suillum PS	Dsui_2724		hypothetical protein	no data	42	86
o	Desulfovibrio vulgaris Hildenborough JW710	DVU0511		conserved hypothetical protein (TIGR)	insig.	39	83
o	Paraburkholderia sabiae LMG 24235	QEN71_RS23110		ribosome maturation factor RimP	sig.	39	86
	Sphingobium sp. HT1-2	GFF2359		Bacterial ribosome SSU maturation protein RimP	no data	40	75
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_05102		ribosome maturation factor RimP	sig.	39	86
o	Paraburkholderia graminis OAS925	ABIE53_001828		ribosome maturation factor RimP	sig.	38	86
	Caulobacter crescentus NA1000	CCNA_00044		ribosome maturation protein RimP	strong	40	73
	Caulobacter crescentus NA1000 Δfur	CCNA_00044		ribosome maturation protein RimP	cofit	40	73
	Rhodospirillum rubrum S1H	Rru_A3778		Protein of unknown function DUF150 (NCBI)	no data	38	72
o	Cupriavidus basilensis FW507-4G11	RR42_RS12855		ribosome maturation protein RimP	no data	38	86
o	Ralstonia solanacearum IBSBF1503	RALBFv3_RS15670		ribosome maturation factor RimP	no data	36	86
o	Ralstonia solanacearum UW163	UW163_RS13130		ribosome maturation factor RimP	no data	36	86
	Brevundimonas sp. GW460-12-10-14-LB2	A4249_RS13990		ribosome maturation factor RimP	no data	34	84
	Bosea sp. OAE506	ABIE41_RS04540		ribosome maturation factor RimP	no data	38	76
o	Ralstonia solanacearum PSI07	RPSI07_RS17685		ribosome maturation factor RimP	no data	35	86
o	Methylophilus sp. DMC18	GFF2850		Ribosome maturation factor RimP	no data	36	88
o	Ralstonia solanacearum GMI1000	RS_RS06450		ribosome maturation factor	no data	36	86
o	Ralstonia sp. UNC404CL21Col	ABZR87_RS11200		ribosome maturation factor RimP	no data	34	86
o	Fusobacterium nucleatum SB010	HUW76_01020		ribosome maturation factor RimP	strong	29	88
	Agrobacterium fabrum C58	Atu0090		hypothetical protein	no data	35	81