| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF7142 | | Transcriptional regulator, LysR family | insig. | 100 | 100 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS04895 | | LysR family transcriptional regulator | insig. | 68 | 98 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_12520 | | transcriptional regulator | sig. | 69 | 98 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS35795 | | LysR family transcriptional regulator | insig. | 68 | 98 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS21915 | | LysR family transcriptional regulator | strong | 43 | 100 |
| o | Shewanella sp. ANA-3 | Shewana3_3800 | | LysR family transcriptional regulator (RefSeq) | insig. | 39 | 100 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_259 | | Transcriptional regulator, LysR family | insig. | 40 | 99 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS02935 | | LysR family transcriptional regulator | insig. | 41 | 99 |
| | Azospirillum sp. SherDot2 | MPMX19_05002 | | HTH-type transcriptional regulator DmlR | insig. | 41 | 100 |
| o | Shewanella oneidensis MR-1 | SO0369 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 38 | 99 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | insig. | 38 | 99 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03714 | | transcriptional regulator, LysR family | insig. | 40 | 100 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_21990 | | LysR family transcriptional regulator | insig. | 38 | 98 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS01140 | | LysR family transcriptional regulator | cofit | 43 | 96 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS03985 | | LysR family transcriptional regulator | insig. | 39 | 99 |
| o | Pseudomonas sp. RS175 | PFR28_02643 | | HTH-type transcriptional regulator DmlR | insig. | 39 | 98 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | insig. | 37 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01123 | | transcriptional regulator, LysR family | insig. | 40 | 99 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02593 | | HTH-type transcriptional regulator DmlR | cofit | 38 | 99 |
| | Paraburkholderia graminis OAS925 | ABIE53_001468 | | DNA-binding transcriptional LysR family regulator | insig. | 41 | 100 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS06700 | | LysR family transcriptional regulator | insig. | 39 | 97 |
| | Ralstonia solanacearum UW163 | UW163_RS06915 | | LysR family transcriptional regulator | insig. | 39 | 97 |
| o | Pseudomonas sp. DMC3 | GFF943 | | HTH-type transcriptional regulator DmlR | cofit | 38 | 99 |
| | Rhodospirillum rubrum S1H | Rru_A1041 | | Transcriptional Regulator, LysR family (NCBI) | insig. | 41 | 98 |
| o | Pseudomonas simiae WCS417 | PS417_16085 | | LysR family transcriptional regulator | insig. | 38 | 99 |
| o | Bosea sp. OAE506 | ABIE41_RS22155 | | LysR family transcriptional regulator | insig. | 44 | 99 |
| o | Ralstonia solanacearum GMI1000 | RS_RS21490 | | LysR family transcriptional regulator | insig. | 38 | 99 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22295 | | LysR family transcriptional regulator | insig. | 38 | 99 |
| o | Pseudomonas orientalis W4I3 | QF045_RS13895 | | LysR family transcriptional regulator | insig. | 38 | 99 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS18050 | | LysR family transcriptional regulator | insig. | 37 | 99 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18050 | | LysR family transcriptional regulator | insig. | 37 | 99 |
| o | Serratia liquefaciens MT49 | IAI46_16195 | | LysR family transcriptional regulator | insig. | 39 | 99 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_14945 | lysR | LysR family transcriptional regulator | insig. | 38 | 99 |
| o | Dickeya dianthicola 67-19 | HGI48_RS19010 | | LysR family transcriptional regulator | insig. | 40 | 99 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS07880 | | LysR family transcriptional regulator | cofit | 37 | 99 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS08130 | | LysR family transcriptional regulator | insig. | 37 | 99 |
| o | Enterobacter sp. TBS_079 | MPMX20_02122 | | HTH-type transcriptional regulator DmlR | sig. | 41 | 99 |
| o | Dickeya dadantii 3937 | DDA3937_RS09005 | | LysR family transcriptional regulator | insig. | 40 | 99 |
| o | Pectobacterium carotovorum WPP14 | HER17_RS06865 | | LysR family transcriptional regulator | insig. | 40 | 99 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS10570 | | LysR family transcriptional regulator | strong | 40 | 99 |
| | Bosea sp. OAE506 | ABIE41_RS20280 | | LysR family transcriptional regulator | insig. | 38 | 99 |
| | Ralstonia solanacearum GMI1000 | RS_RS19305 | | LysR family transcriptional regulator | insig. | 38 | 100 |
| o | Pseudomonas sp. BP01 | JOY50_RS04745 | | LysR family transcriptional regulator | insig. | 38 | 99 |
| | Rhodospirillum rubrum S1H | Rru_A2257 | | Transcriptional Regulator, LysR family (NCBI) | strong | 37 | 99 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS03455 | | LysR family transcriptional regulator | insig. | 38 | 99 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 37 | 99 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3607 | | transcriptional regulator, LysR family | insig. | 37 | 99 |
| o | Agrobacterium fabrum C58 | Atu0664 | | transcriptional regulator, LysR family | strong | 42 | 98 |
| | Shewanella oneidensis MR-1 | SOA0165 | | transcriptional regulator, LysR family (NCBI ptt file) | insig. | 37 | 96 |
| o | Synechocystis sp000284455 PCC 6803 | SGL_RS07535 | | LysR family transcriptional regulator | strong | 36 | 99 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS02875 | | LysR family transcriptional regulator | insig. | 41 | 99 |
| o | Rahnella sp. WP5 | EX31_RS16730 | | LysR family transcriptional regulator | insig. | 38 | 98 |
| | Ralstonia solanacearum GMI1000 | RS_RS11675 | | LysR family transcriptional regulator | insig. | 37 | 99 |
| o | Pseudomonas putida KT2440 | PP_3811 | | Transcriptional regulator, LysR family | insig. | 36 | 99 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0123 | | transcriptional regulator, LysR family (RefSeq) | sig. | 38 | 99 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS20365 | | LysR family transcriptional regulator | insig. | 36 | 99 |
| | Rahnella sp. WP5 | EX31_RS06010 | | LysR family transcriptional regulator | insig. | 38 | 98 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS20090 | | LysR family transcriptional regulator | insig. | 41 | 99 |
| o | Cupriavidus basilensis FW507-4G11 | RR42_RS06390 | | LysR family transcriptional regulator | insig. | 37 | 98 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF461 | | Transcriptional regulator, LysR family | insig. | 38 | 99 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_28465 | | LysR family transcriptional regulator | insig. | 40 | 99 |
| | Methylophilus sp. DMC18 | GFF2116 | | HTH-type transcriptional regulator PgrR | insig. | 38 | 100 |
| | Rhizobium sp. OAE497 | ABIE40_RS04915 | | LysR family transcriptional regulator | insig. | 42 | 98 |
| | Pseudomonas sp. RS175 | PFR28_02027 | | HTH-type transcriptional regulator DmlR | insig. | 40 | 99 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS13340 | | LysR family transcriptional regulator | insig. | 39 | 97 |
| | Ralstonia solanacearum UW163 | UW163_RS00230 | | LysR family transcriptional regulator | insig. | 39 | 97 |
| o | Marinobacter adhaerens HP15 | HP15_2748 | | transcriptional regulator, LysR family protein | insig. | 38 | 95 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS11355 | | LysR family transcriptional regulator | insig. | 37 | 99 |
| o | Caulobacter crescentus NA1000 | CCNA_02602 | | LysR-family transcriptional regulator | insig. | 40 | 100 |
| o | Caulobacter crescentus NA1000 Δfur | CCNA_02602 | | LysR-family transcriptional regulator | insig. | 40 | 100 |
| | Acinetobacter baumannii LAC-4 | RR41_RS06075 | | multidrug efflux transcriptional repressor AdeL | insig. | 39 | 100 |
| | Rahnella sp. WP5 | EX31_RS20705 | | LysR family transcriptional regulator | insig. | 39 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03187 | | transcriptional regulator, LysR family | sig. | 41 | 99 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS42300 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 39 | 98 |
| o | Lysobacter sp. OAE881 | ABIE51_RS12770 | | LysR family transcriptional regulator | insig. | 39 | 98 |
| o | Shewanella loihica PV-4 | Shew_2292 | | LysR family transcriptional regulator (RefSeq) | insig. | 39 | 100 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_18535 | | glutathione-dependent formaldehyde neutralization regulator | insig. | 39 | 98 |
| | Pseudomonas stutzeri RCH2 | Psest_3003 | | Transcriptional regulator | sig. | 38 | 98 |
| | Paraburkholderia graminis OAS925 | ABIE53_006359 | | DNA-binding transcriptional LysR family regulator | sig. | 38 | 99 |
| | Shewanella loihica PV-4 | Shew_2278 | | LysR family transcriptional regulator (RefSeq) | insig. | 37 | 99 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS19415 | | LysR family transcriptional regulator | insig. | 40 | 99 |
| | Sinorhizobium meliloti 1021 | SMc00831 | | transcriptional regulator | insig. | 42 | 98 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS14825 | gfnR;inference=COORDINATES | glutathione-dependent formaldehyde neutralization regulator | insig. | 39 | 98 |
| o | Variovorax sp. OAS795 | ABID97_RS27305 | | LysR family transcriptional regulator | insig. | 39 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_02111 | | transcriptional regulator, LysR family | insig. | 40 | 100 |
| o | Pseudomonas sp. S08-1 | OH686_18145 | | Transcriptional regulator, LysR family, in formaldehyde detoxification operon | insig. | 38 | 100 |
| | Paraburkholderia graminis OAS925 | ABIE53_001472 | | DNA-binding transcriptional LysR family regulator | insig. | 38 | 100 |
| | Variovorax sp. OAS795 | ABID97_RS28810 | | LysR substrate-binding domain-containing protein | insig. | 41 | 100 |
| | Paraburkholderia graminis OAS925 | ABIE53_004366 | | DNA-binding transcriptional LysR family regulator | sig. | 39 | 99 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_05200 | | transcriptional regulator, LysR family | insig. | 38 | 99 |
| | Pseudomonas sp. DMC3 | GFF3562 | | HTH-type transcriptional regulator DmlR | insig. | 38 | 99 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_19415 | | LysR family transcriptional regulator | insig. | 33 | 99 |
| | Paraburkholderia graminis OAS925 | ABIE53_000975 | | LysR family transcriptional activator of dmlA | insig. | 40 | 98 |
| | Rhizobium sp. OAE497 | ABIE40_RS03550 | | LysR family transcriptional regulator | strong | 40 | 99 |
| | Pectobacterium carotovorum WPP14 | HER17_RS05010 | | LysR family transcriptional regulator | insig. | 38 | 99 |
| | Variovorax sp. SCN45 | GFF137 | | Transcriptional regulator PA4174, LysR family | insig. | 38 | 98 |
| | Marinobacter adhaerens HP15 | HP15_936 | | transcriptional regulator, LysR family protein | insig. | 37 | 99 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30015 | | LysR family transcriptional regulator | insig. | 39 | 97 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c29160 | | HTH-type transcriptional regulator, LysR family | insig. | 35 | 100 |
| | Variovorax sp. OAS795 | ABID97_RS28680 | | LysR family transcriptional regulator | insig. | 39 | 98 |