| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF3038 | | hypothetical protein | insig. | 100 | 100 |
| | Variovorax sp. SCN45 | GFF6693 | | Two-component transcriptional response regulator, LuxR family | insig. | 47 | 100 |
| | Variovorax sp. OAS795 | ABID97_RS24215 | | response regulator transcription factor | insig. | 47 | 96 |
| | Variovorax sp. SCN45 | GFF6647 | | Two-component transcriptional response regulator, LuxR family | insig. | 39 | 98 |
| | Variovorax sp. SCN45 | GFF3032 | | Two-component transcriptional response regulator, LuxR family | insig. | 35 | 95 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS34855 | | LuxR family transcriptional regulator | insig. | 37 | 95 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5425 | | response regulator, NarL-family | insig. | 34 | 97 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3174 | | response regulator, NarL-family | insig. | 35 | 97 |
| | Variovorax sp. SCN45 | GFF1411 | | Two-component transcriptional response regulator, LuxR family | insig. | 33 | 95 |
| | Bosea sp. OAE506 | ABIE41_RS15410 | | response regulator transcription factor | insig. | 34 | 97 |
| | Variovorax sp. OAS795 | ABID97_RS20830 | | response regulator transcription factor | insig. | 34 | 91 |
| | Variovorax sp. SCN45 | GFF1180 | | hypothetical protein | insig. | 30 | 98 |
| | Variovorax sp. OAS795 | ABID97_RS11805 | | response regulator transcription factor | no data | 44 | 57 |
| | Variovorax sp. OAS795 | ABID97_RS19165 | | response regulator transcription factor | no data | 35 | 79 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS08030 | | DNA-binding response regulator | insig. | 31 | 98 |
| | Ralstonia solanacearum UW163 | UW163_RS05600 | | DNA-binding response regulator | insig. | 31 | 98 |
| | Variovorax sp. SCN45 | GFF5975 | | Two-component transcriptional response regulator, LuxR family | insig. | 40 | 53 |
| | Variovorax sp. OAS795 | ABID97_RS06320 | | response regulator transcription factor | sig. | 37 | 76 |
| | Dechlorosoma suillum PS | Dsui_1862 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 32 | 81 |
| | Variovorax sp. SCN45 | GFF69 | | Two-component transcriptional response regulator, LuxR family | insig. | 34 | 79 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS16425 | | response regulator transcription factor | insig. | 31 | 95 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3359 | | response regulatory protein | sig. | 32 | 96 |
| | Lysobacter sp. OAE881 | ABIE51_RS14590 | | response regulator transcription factor | sig. | 32 | 93 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1122 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 29 | 89 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS06050 | | DNA-binding response regulator | cofit | 32 | 98 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS14195 | | response regulator transcription factor | no data | 31 | 76 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS14480 | | response regulator transcription factor | strong | 31 | 76 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS14100 | | response regulator transcription factor | insig. | 31 | 76 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS21600 | | response regulator transcription factor | insig. | 31 | 93 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS21600 | | response regulator transcription factor | sig. | 31 | 93 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS21335 | | response regulator transcription factor | sig. | 31 | 76 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_03330 | citB | DNA-binding response regulator | insig. | 31 | 76 |
| | Pseudomonas orientalis W4I3 | QF045_RS21775 | | response regulator transcription factor | insig. | 32 | 76 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_19270 | | LuxR family transcriptional regulator | strong | 30 | 79 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS42425 | | response regulator transcription factor | insig. | 33 | 78 |
| | Variovorax sp. SCN45 | GFF4452 | | Two-component transcriptional response regulator, LuxR family | insig. | 33 | 76 |
| | Pseudomonas sp. DMC3 | GFF4570 | | Transcriptional regulatory protein DegU | insig. | 31 | 79 |
| | Pseudomonas simiae WCS417 | PS417_19630 | | LuxR family transcriptional regulator | cofit | 30 | 96 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3859.1 | | Two-component system regulatory protein | sig. | 33 | 73 |
| | Cellulophaga baltica 18 | M666_RS04555 | | response regulator transcription factor | insig. | 30 | 77 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_04126 | | Transcriptional regulatory protein DegU | cofit | 31 | 83 |
| | Pseudomonas sp. SVBP6 | COO64_RS09150 | | response regulator transcription factor | insig. | 29 | 84 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS32080 | | response regulator transcription factor | insig. | 32 | 78 |
| | Pseudomonas sp. BP01 | JOY50_RS24990 | | response regulator transcription factor | insig. | 31 | 78 |
| | Variovorax sp. SCN45 | GFF120 | | Two-component transcriptional response regulator, LuxR family | no data | 40 | 52 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3272 | | DNA-binding response regulator, LuxR family | insig. | 36 | 69 |
| | Acinetobacter radioresistens SK82 | MPMX26_02902 | | Transcriptional activator protein ExaE | strong | 32 | 72 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS30900 | | transcriptional regulator | sig. | 32 | 78 |
| | Acinetobacter baumannii LAC-4 | RR41_RS00990 | | response regulator transcription factor | insig. | 32 | 72 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_24485 | | regulator | insig. | 30 | 76 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS11285 | | response regulator transcription factor | strong | 32 | 76 |
| | Rhodospirillum rubrum S1H | Rru_A3229 | | Two Component Transcriptional Regulator, LuxR family (NCBI) | insig. | 30 | 89 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4833 | | DNA-binding response regulator, LuxR family | sig. | 30 | 76 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS59515 | | response regulator transcription factor | insig. | 40 | 70 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03209 | | Transcriptional regulatory protein LnrK | cofit | 34 | 76 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS07850 | | response regulator transcription factor | strong | 28 | 95 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS18280 | | response regulator transcription factor | insig. | 41 | 70 |
| | Variovorax sp. OAS795 | ABID97_RS28185 | | response regulator transcription factor | insig. | 33 | 71 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS11185 | | response regulator transcription factor | insig. | 29 | 97 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2277 | | DNA-binding response regulator, LuxR family | insig. | 29 | 79 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_232 | | DNA-binding response regulator, LuxR family | insig. | 29 | 79 |
| | Methylophilus sp. DMC18 | GFF2498 | | Transcriptional regulatory protein RcsB | insig. | 31 | 77 |
| | Ralstonia solanacearum GMI1000 | RS_RS15885 | | DNA-binding response regulator | insig. | 33 | 98 |
| | Pseudomonas sp. SVBP6 | COO64_RS05130 | | response regulator transcription factor | insig. | 33 | 76 |
| | Pantoea sp. MT58 | IAI47_04245 | | two-component system response regulator NarL | sig. | 32 | 75 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_02965 | | LuxR family transcriptional regulator | insig. | 30 | 79 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS04510 | | response regulator transcription factor | insig. | 28 | 95 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_11645 | | DNA-binding response regulator | no data | 42 | 63 |
| | Bosea sp. OAE506 | ABIE41_RS24085 | | response regulator transcription factor | no data | 32 | 74 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS08905 | | XRE family transcriptional regulator | insig. | 33 | 76 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2397.1 | | two-component system regulatory protein | insig. | 31 | 96 |
| | Pseudomonas sp. RS175 | PFR28_01435 | | Response regulator UvrY | insig. | 29 | 95 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_26265 | | LuxR family transcriptional regulator | no data | 35 | 81 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | no data | 33 | 81 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | no data | 33 | 81 |
| | Lysobacter sp. OAE881 | ABIE51_RS10320 | | response regulator transcription factor | insig. | 31 | 76 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS21285 | | DNA-binding response regulator | insig. | 30 | 73 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2577 | | DNA-binding response regulator, LuxR family (TIGR) | strong | 31 | 80 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1492 | | Nitrate/nitrite response regulator protein | no data | 31 | 93 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_1897 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | strong | 29 | 76 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1129 | | two component transcriptional regulator, LuxR family (RefSeq) | insig. | 36 | 75 |
| | Pseudomonas putida KT2440 | PP_2126 | | DNA-binding response regulator, LuxR family | insig. | 28 | 95 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS20525 | | LuxR family transcriptional regulator | cofit | 33 | 75 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS08855 | | response regulator transcription factor | strong | 32 | 74 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2030 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 25 | 90 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_29835 | | LuxR family transcriptional regulator | insig. | 28 | 95 |
| | Pseudomonas sp. RS175 | PFR28_01009 | | Transcriptional regulatory protein DegU | insig. | 30 | 76 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1774 | | DNA-binding response regulator, LuxR family, near polyamine transporter | insig. | 28 | 95 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS16725 | | two-component system response regulator NarL | insig. | 32 | 75 |
| | Lysobacter sp. OAE881 | ABIE51_RS10325 | | response regulator transcription factor | insig. | 30 | 76 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS18195 | | XRE family transcriptional regulator | insig. | 31 | 75 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS14300 | | response regulator transcription factor | no data | 34 | 76 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS14300 | | response regulator transcription factor | sig. | 34 | 76 |
| | Pseudomonas stutzeri RCH2 | Psest_0662 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | insig. | 33 | 76 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2418 | | DNA-binding response regulator, LuxR family | insig. | 29 | 76 |
| | Pseudomonas sp. RS175 | PFR28_01628 | | Nitrate/nitrite response regulator protein NarL | insig. | 29 | 88 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_06455 | | DNA-binding response regulator | insig. | 27 | 81 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1128 | | Two-component response regulator | insig. | 34 | 81 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS13490 | narL;go_function=DNA | two-component system response regulator NarL | insig. | 29 | 82 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_19985 | | two-component system response regulator NarL | no data | 29 | 82 |