Homologs of CA265_RS15600 from Pedobacter sp. GW460-11-11-14-LB5

ATP-dependent RNA helicase
SEED: DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13)
KEGG: ATP-dependent RNA helicase DeaD

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15600 ATP-dependent RNA helicase no data 100 100
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01495 DEAD/DEAH box helicase no data 76 85
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS11910 DEAD/DEAH box helicase strong 51 93
o Phocaeicola dorei CL03T12C01 ABI39_RS04950 DEAD/DEAH box helicase strong 51 93
o Bacteroides stercoris CC31F HMPREF1181_RS02175 DEAD/DEAH box helicase sig. 50 96
o Bacteroides thetaiotaomicron VPI-5482 BT3303 ATP-dependent RNA helicase (NCBI ptt file) sig. 54 87
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS06015 DEAD/DEAH box helicase insig. 54 88
o Bacteroides ovatus ATCC 8483 BACOVA_00904 DEAD/DEAH box helicase insig. 51 89
o Methanococcus maripaludis JJ MMJJ_RS02855 DEAD/DEAH box helicase strong 40 84
o Methanococcus maripaludis S2 MMP_RS02420 DEAD/DEAH box helicase no data 40 84
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS08990 DEAD/DEAH box helicase strong 37 89
o Rhodanobacter sp. FW510-T8 OKGIIK_09705 ATP-dependent RNA helicase cofit 35 90
o Desulfovibrio vulgaris Miyazaki F DvMF_2125 DEAD/DEAH box helicase domain protein (RefSeq) no data 40 84
o Fusobacterium nucleatum SB010 HUW76_10100 DEAD/DEAH box helicase strong 37 85
o Rahnella sp. WP5 EX31_RS08510 DEAD/DEAH family ATP-dependent RNA helicase insig. 37 94
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05910 RNA helicase strong 39 85
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) insig. 35 85
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02650 DEAD/DEAH box helicase insig. 34 90
o Rhodanobacter denitrificans MT42 LRK55_RS02405 DEAD/DEAH box helicase cofit 34 88
o Shewanella amazonensis SB2B Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) strong 36 85
o Dechlorosoma suillum PS Dsui_1351 DNA/RNA helicase, superfamily II strong 35 91
o Pantoea sp. MT58 IAI47_16990 DEAD/DEAH family ATP-dependent RNA helicase strong 37 88
o Serratia liquefaciens MT49 IAI46_01970 DEAD/DEAH family ATP-dependent RNA helicase cofit 37 91
o Pseudomonas putida KT2440 PP_1868 ATP-dependent DEAD-box RNA helicase DeaD no data 36 84
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3056 Superfamily II DNA and RNA helicases no data 39 85
o Pseudomonas syringae pv. syringae B728a Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal no data 36 84
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3619 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal no data 36 84
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2247 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 36 84
o Pseudomonas sp. S08-1 OH686_22545 DEAD-box ATP-dependent RNA helicase DeaD ( CshA) cofit 35 85
o Pseudomonas stutzeri RCH2 Psest_1804 Superfamily II DNA and RNA helicases strong 35 84
o Pseudomonas sp. RS175 PFR28_00980 ATP-dependent RNA helicase DeaD insig. 36 84
o Enterobacter asburiae PDN3 EX28DRAFT_3211 Superfamily II DNA and RNA helicases no data 37 89
o Alteromonas macleodii MIT1002 MIT1002_00666 Cold-shock DEAD box protein A strong 34 89
o Pseudomonas fluorescens FW300-N2C3 AO356_03110 RNA helicase no data 36 84
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_265 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 36 84
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2450 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) no data 36 84
o Desulfovibrio vulgaris Hildenborough JW710 DVU3310 deaD ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) strong 37 85
o Pseudomonas simiae WCS417 PS417_08540 RNA helicase strong 35 84
o Pseudomonas fluorescens SBW25 PFLU_RS08490 DEAD/DEAH box helicase no data 36 84
o Pseudomonas fluorescens SBW25-INTG PFLU_RS08490 DEAD/DEAH box helicase strong 36 84
o Pseudomonas fluorescens FW300-N2E3 AO353_19130 RNA helicase no data 36 84
o Dickeya dadantii 3937 DDA3937_RS03100 DEAD/DEAH family ATP-dependent RNA helicase insig. 36 90
o Shewanella loihica PV-4 Shew_0531 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 34 88
o Enterobacter sp. TBS_079 MPMX20_04066 ATP-dependent RNA helicase DeaD insig. 37 94
o Klebsiella michiganensis M5al BWI76_RS25055 DEAD/DEAH family ATP-dependent RNA helicase no data 37 85
o Mycobacterium tuberculosis H37Rv Rv1253 Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) insig. 35 88
o Erwinia tracheiphila SCR3 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase no data 35 93
  Lysobacter sp. OAE881 ABIE51_RS12265 DEAD/DEAH box helicase insig. 43 60
o Kangiella aquimarina DSM 16071 B158DRAFT_1850 ATP-dependent RNA helicase CsdA (EC 5.99.1.-) insig. 33 85
o Dickeya dianthicola ME23 DZA65_RS03270 DEAD/DEAH family ATP-dependent RNA helicase no data 36 85
  Escherichia coli ECRC101 OKFHMN_18155 deaD ATP-dependent RNA helicase DeaD sig. 43 63
  Escherichia coli ECRC101 MCAODC_08675 deaD ATP-dependent RNA helicase DeaD sig. 43 63
  Escherichia coli ECRC102 NIAGMN_15915 deaD ATP-dependent RNA helicase DeaD insig. 43 63
  Escherichia coli ECRC98 JDDGAC_21780 deaD ATP-dependent RNA helicase DeaD no data 43 63
  Escherichia coli ECRC99 KEDOAH_09995 deaD ATP-dependent RNA helicase DeaD no data 43 63
o Dickeya dianthicola 67-19 HGI48_RS03275 DEAD/DEAH family ATP-dependent RNA helicase insig. 36 85
  Escherichia coli BL21 ECD_03029 ATP-dependent RNA helicase sig. 43 63
  Escherichia fergusonii Becca EFB2_00661 ATP-dependent RNA helicase DeaD sig. 43 63
  Escherichia coli ECOR27 NOLOHH_09955 deaD ATP-dependent RNA helicase DeaD no data 43 63
  Escherichia coli ECRC62 BNILDI_01580 deaD ATP-dependent RNA helicase DeaD sig. 43 63
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00538 ATP-dependent RNA helicase DeaD cofit 43 63
  Escherichia coli Nissle 1917 ECOLIN_RS18165 ATP-dependent RNA helicase DeaD cofit 43 63
  Escherichia coli BW25113 b3162 deaD inducible ATP-independent RNA helicase (VIMSS) strong 43 63
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1504 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) strong 43 63
  Escherichia coli ECOR38 HEPCGN_17030 deaD ATP-dependent RNA helicase DeaD strong 43 63
  Pectobacterium carotovorum WPP14 HER17_RS18175 DEAD/DEAH family ATP-dependent RNA helicase insig. 42 64
o Shewanella oneidensis MR-1 SO4034 deaD ATP-dependent RNA helicase DeaD (NCBI ptt file) strong 34 85
o Shewanella sp. ANA-3 Shewana3_3595 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 32 91
  Vibrio cholerae E7946 ATCC 55056 CSW01_18185 DEAD/DEAH box family ATP-dependent RNA helicase insig. 41 60
  Marinobacter adhaerens HP15 HP15_588 DEAD/DEAH box helicase domain protein sig. 43 59
  Rhizobium sp. OAE497 ABIE40_RS13915 DEAD/DEAH box helicase insig. 44 57
  Sinorhizobium meliloti 1021 SM_b20880 ATP-dependent RNA helicase strong 42 58
  Agrobacterium fabrum C58 Atu2333 ATP-dependent RNA helicase strong 41 59
  Cupriavidus basilensis FW507-4G11 RR42_RS02870 RNA helicase sig. 42 59
  Marinobacter adhaerens HP15 HP15_3607 DEAD/DEAH box helicase domain protein insig. 42 59
  Serratia liquefaciens MT49 IAI46_06620 ATP-dependent RNA helicase RhlE insig. 41 58
  Shewanella loihica PV-4 Shew_0604 DEAD/DEAH box helicase domain-containing protein (RefSeq) insig. 40 59
  Ralstonia sp. UNC404CL21Col ABZR87_RS07850 DEAD/DEAH box helicase sig. 41 59
  Ralstonia solanacearum GMI1000 RS_RS02695 RNA helicase sig. 41 59
  Ralstonia solanacearum PSI07 RPSI07_RS21325 RNA helicase sig. 42 59
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS11875 RNA helicase strong 41 59
  Ralstonia solanacearum UW163 UW163_RS01715 RNA helicase insig. 41 59
  Rahnella sp. WP5 EX31_RS23775 ATP-dependent RNA helicase RhlE insig. 41 58
  Phocaeicola dorei CL03T12C01 ABI39_RS02170 DEAD/DEAH box helicase insig. 42 57
  Dickeya dadantii 3937 DDA3937_RS08645 ATP-dependent RNA helicase RhlE sig. 40 58
  Enterobacter sp. TBS_079 MPMX20_01425 ATP-dependent RNA helicase RhlE insig. 40 59
  Magnetospirillum magneticum AMB-1 AMB_RS07215 ATP-dependent helicase insig. 43 57
  Variovorax sp. OAS795 ABID97_RS22030 DEAD/DEAH box helicase strong 42 58
  Variovorax sp. SCN45 GFF1917 ATP-dependent RNA helicase Bcep18194_A5658 strong 42 58
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF222 ATP-dependent RNA helicase Bcep18194_A5658 insig. 41 58
  Paraburkholderia sabiae LMG 24235 QEN71_RS02265 DEAD/DEAH box helicase strong 40 59
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_06050 ATP-dependent RNA helicase insig. 40 56
  Paraburkholderia graminis OAS925 ABIE53_003462 ATP-dependent RNA helicase RhlE sig. 41 59
  Pectobacterium carotovorum WPP14 HER17_RS13325 ATP-dependent RNA helicase RhlE insig. 41 58
  Dickeya dianthicola ME23 DZA65_RS09075 ATP-dependent RNA helicase RhlE insig. 39 58
  Erwinia tracheiphila SCR3 LU632_RS09215 rhlE ATP-dependent RNA helicase RhlE cofit 39 59
  Dickeya dianthicola 67-19 HGI48_RS08785 ATP-dependent RNA helicase RhlE cofit 39 58
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02855 DEAD/DEAH box helicase sig. 41 57
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04222 ATP-dependent RNA helicase RhlE sig. 40 59
  Burkholderia phytofirmans PsJN BPHYT_RS16445 RNA helicase strong 40 59