Homologs of AMB_RS03585 from Magnetospirillum magneticum AMB-1

RNA polymerase sigma factor RpoD
SEED: RNA polymerase sigma factor RpoD
KEGG: RNA polymerase primary sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Magnetospirillum magneticum AMB-1 AMB_RS03585 RNA polymerase sigma factor RpoD no data 100 100
o Rhodospirillum rubrum S1H Rru_A2882 Sigma 70 (RpoD) (NCBI) no data 72 100
o Azospirillum sp. SherDot2 MPMX19_00761 RNA polymerase sigma factor RpoD no data 72 100
o Azospirillum brasilense Sp245 AZOBR_RS10905 RNA polymerase sigma factor RpoD no data 74 100
o Rhizobium sp. OAE497 ABIE40_RS12720 RNA polymerase sigma factor RpoD no data 65 100
o Agrobacterium fabrum C58 Atu2167 RNA polymerase sigma factor RpoD no data 65 100
o Sinorhizobium meliloti 1021 SMc01563 RNA polymerase sigma factor RpoD no data 65 100
o Xanthobacter sp. DMC5 GFF3244 RNA polymerase sigma factor RpoD no data 66 100
o Dinoroseobacter shibae DFL-12 Dshi_2261 RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) no data 64 97
o Rhodopseudomonas palustris CGA009 TX73_006610 RNA polymerase sigma factor RpoD no data 65 97
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10595 RNA polymerase sigma factor RpoD no data 64 98
o Phaeobacter inhibens DSM 17395 PGA1_c08800 RNA polymerase sigma factor RpoD no data 64 96
o Sphingomonas koreensis DSMZ 15582 Ga0059261_4238 RNA polymerase sigma factor RpoD, C-terminal domain no data 63 97
o Caulobacter crescentus NA1000 CCNA_03142 RNA polymerase sigma factor rpoD no data 63 99
o Caulobacter crescentus NA1000 Δfur CCNA_03142 RNA polymerase sigma factor rpoD no data 63 99
o Bosea sp. OAE506 ABIE41_RS11995 RNA polymerase sigma factor RpoD no data 62 100
o Sphingobium sp. HT1-2 GFF2093 RNA polymerase sigma factor RpoD no data 61 100
o Marinobacter adhaerens HP15 HP15_315 RNA polymerase, sigma 70 subunit, RpoD no data 48 95
o Pseudomonas syringae pv. syringae B728a Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 48 95
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4641 RNA polymerase, sigma 70 subunit, RpoD no data 48 95
o Rhodanobacter sp. FW510-T8 OKGIIK_13865 rpoD RNA polymerase sigma factor RpoD no data 48 96
o Alteromonas macleodii MIT1002 MIT1002_00733 Sigma-70 no data 48 95
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS13945 RNA polymerase sigma factor RpoD no data 49 95
o Rhodanobacter denitrificans MT42 LRK55_RS07055 RNA polymerase sigma factor RpoD no data 48 96
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS07325 RNA polymerase sigma factor RpoD no data 48 96
o Castellaniella sp019104865 MT123 ABCV34_RS02695 RNA polymerase sigma factor RpoD no data 44 95
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3822 RNA polymerase sigma factor RpoD no data 46 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS15185 RNA polymerase sigma factor RpoD strong 46 95
  Pseudomonas sp. SVBP6 COO64_RS22580 rpoD RNA polymerase sigma factor RpoD no data 62 57
  Kangiella aquimarina DSM 16071 B158DRAFT_0818 RNA polymerase sigma factor, sigma-70 family no data 59 59
  Pseudomonas fluorescens FW300-N2C3 AO356_14265 RNA polymerase subunit sigma-70 no data 64 53
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4791 RNA polymerase sigma factor RpoD no data 64 53
  Serratia liquefaciens MT49 IAI46_22125 RNA polymerase sigma factor RpoD no data 64 53
  Pseudomonas fluorescens FW300-N2E3 AO353_07385 RNA polymerase subunit sigma-70 no data 64 53
  Pseudomonas sp. RS175 PFR28_04078 RNA polymerase sigma factor RpoD no data 64 53
o Methylophilus sp. DMC18 GFF2349 RNA polymerase sigma factor RpoD no data 57 60
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS11870 RNA polymerase sigma factor RpoD no data 65 51
  Pectobacterium carotovorum WPP14 HER17_RS18415 RNA polymerase sigma factor RpoD no data 63 53
  Erwinia tracheiphila SCR3 LU632_RS20725 rpoD RNA polymerase sigma factor RpoD no data 65 51
  Pseudomonas fluorescens SBW25 PFLU_RS27535 RNA polymerase sigma factor RpoD no data 60 57
  Pseudomonas fluorescens SBW25-INTG PFLU_RS27535 RNA polymerase sigma factor RpoD no data 60 57
  Escherichia coli BL21 ECD_02937 RNA polymerase, sigma 70 (sigma D) factor no data 63 53
  Escherichia fergusonii Becca EFB2_00744 RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli ECOR27 NOLOHH_10445 rpoD RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli ECOR38 HEPCGN_17510 rpoD RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli ECRC100 OKFHMN_18655 rpoD RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli ECRC101 MCAODC_09170 rpoD RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli ECRC102 NIAGMN_16420 rpoD RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli ECRC62 BNILDI_01070 rpoD RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli ECRC98 JDDGAC_22290 rpoD RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli ECRC99 KEDOAH_09490 rpoD RNA polymerase sigma factor RpoD no data 63 53
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00635 RNA polymerase sigma factor RpoD no data 63 53
  Rahnella sp. WP5 EX31_RS08195 RNA polymerase sigma factor RpoD no data 63 53
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05296 RNA polymerase sigma factor RpoD no data 60 57
  Pseudomonas sp. BP01 JOY50_RS18070 rpoD RNA polymerase sigma factor RpoD no data 65 53
  Pseudomonas simiae WCS417 PS417_25880 RNA polymerase subunit sigma-70 no data 60 57
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2513 RNA polymerase sigma factor RpoD no data 61 57
  Dickeya dadantii 3937 DDA3937_RS02945 RNA polymerase sigma factor RpoD no data 66 51
  Erwinia amylovora T8 OLJFJH_07585 RNA polymerase sigma factor RpoD no data 66 51
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3177 RNA polymerase sigma factor RpoD no data 63 53
  Pseudomonas putida KT2440 PP_0387 RNA polymerase, sigma 70 (sigma D) factor no data 65 53
  Shewanella oneidensis MR-1 SO1284 rpoD RNA polymerase sigma-70 factor (NCBI ptt file) no data 63 53
o Cupriavidus basilensis FW507-4G11 RR42_RS10750 DNA-directed RNA polymerase sigma-70 factor no data 40 95
  Dickeya dianthicola 67-19 HGI48_RS03110 RNA polymerase sigma factor RpoD no data 66 51
  Dickeya dianthicola ME23 DZA65_RS03105 RNA polymerase sigma factor RpoD no data 66 51
  Shewanella sp. ANA-3 Shewana3_3087 RNA polymerase, sigma 70 subunit, RpoD (RefSeq) no data 63 53
  Escherichia coli BW25113 b3067 rpoD RNA polymerase sigma factor (NCBI) no data 63 53
  Pseudomonas sp. DMC3 GFF51 RNA polymerase sigma factor RpoD no data 65 52
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1186 RNA polymerase sigma factor RpoD no data 65 52
  Shewanella amazonensis SB2B Sama_0823 RNA polymerase sigma-70 factor (RefSeq) no data 62 53
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS01085 RNA polymerase sigma factor RpoD no data 61 55
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4729.1 RNA polymerase sigma factor RpoD no data 65 51
  Pseudomonas sp. S08-1 OH686_14970 RNA polymerase sigma factor RpoD no data 62 54
  Pseudomonas segetis P6 MPMX49_00864 RNA polymerase sigma factor RpoD no data 63 53
  Vibrio cholerae E7946 ATCC 55056 CSW01_02745 RNA polymerase sigma factor RpoD no data 64 52
  Lysobacter sp. OAE881 ABIE51_RS02310 RNA polymerase sigma factor RpoD no data 64 52
  Pseudomonas aeruginosa PA14 IKLFDK_22530 RNA polymerase sigma factor RpoD no data 63 53
  Pseudomonas stutzeri RCH2 Psest_3682 RNA polymerase sigma factor, sigma-70 family no data 63 53
  Ralstonia solanacearum PSI07 RPSI07_RS13555 RNA polymerase sigma factor RpoD no data 59 54
  Cupriavidus basilensis FW507-4G11 RR42_RS14965 hypothetical protein strong 54 59
  Ralstonia solanacearum GMI1000 RS_RS11120 RNA polymerase sigma factor RpoD no data 61 52
  Acinetobacter baumannii LAC-4 RR41_RS03995 RNA polymerase sigma factor RpoD no data 65 51
  Acinetobacter radioresistens SK82 MPMX26_00713 RNA polymerase sigma factor RpoD no data 65 51
  Variovorax sp. OAS795 ABID97_RS10535 RNA polymerase sigma factor RpoD no data 54 63
  Variovorax sp. SCN45 GFF2879 RNA polymerase sigma factor RpoD no data 54 63
  Acidovorax sp. GW101-3H11 Ac3H11_194 RNA polymerase sigma factor RpoD no data 54 63
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06008 RNA polymerase, sigma 70 subunit, RpoD strong 60 52
o Paraburkholderia graminis OAS925 ABIE53_004866 RNA polymerase primary sigma factor strong 60 52
  Burkholderia phytofirmans PsJN BPHYT_RS33535 RNA polymerase sigma factor RpoD strong 60 52
  Desulfovibrio vulgaris Miyazaki F DvMF_0494 RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) no data 73 38
  Desulfovibrio vulgaris Hildenborough JW710 DVU1788 rpoD RNA polymerase sigma-70 factor (TIGR) no data 73 38
  Paraburkholderia sabiae LMG 24235 QEN71_RS13555 RNA polymerase sigma factor RpoD no data 53 52
  Paraburkholderia graminis OAS925 ABIE53_004960 RNA polymerase primary sigma factor strong 49 62
  Fusobacterium nucleatum SB010 HUW76_03650 RNA polymerase sigma factor RpoD no data 61 38
  Bifidobacterium breve UCC2003 BBR_RS16480 RNA polymerase sigma factor no data 60 36
  Mycobacterium tuberculosis H37Rv Rv2703 RNA polymerase sigma factor SigA (sigma-A) no data 58 38
  Synechococcus elongatus PCC 7942 Synpcc7942_0649 rpoD1 RNA polymerase sigma factor RpoD no data 59 35
  Synechocystis sp000284455 PCC 6803 SGL_RS17245 RNA polymerase sigma factor RpoD no data 59 35
  Mycobacterium tuberculosis H37Rv Rv2710 RNA polymerase sigma factor SigB no data 51 35
  Shewanella amazonensis SB2B Sama_0276 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein (RefSeq) insig. 48 41