Conservation of cofitness between Xcc-8004.1205.1 and Xcc-8004.2954.1 in Xanthomonas campestris pv. campestris strain 8004

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1205.1 hypothetical protein 1.0 Xcc-8004.2954.1 Threonine synthase (EC 4.2.3.1) 0.81 4
Lysobacter sp. OAE881 0.82 ABIE51_RS17260 RidA family protein 0.56 ABIE51_RS17530 threonine synthase 0.93 7
Dyella japonica UNC79MFTsu3.2 0.79 ABZR86_RS11845 RidA family protein 0.61 ABZR86_RS15975 threonine synthase (EC 4.2.3.1) (from data) 0.75 67
Rhodanobacter sp. FW510-T8 0.79 OKGIIK_12095 ridA reactive intermediate/imine deaminase 0.63 OKGIIK_13570 thrC threonine synthase low > 52
Rhodanobacter denitrificans MT42 0.79 LRK55_RS11525 RidA family protein 0.61 LRK55_RS09995 threonine synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.79 LRK54_RS11800 RidA family protein 0.61 LRK54_RS10355 threonine synthase low > 59
Pseudomonas stutzeri RCH2 0.64 Psest_3818 endoribonuclease L-PSP, putative 0.28 Psest_3125 threonine synthase — —
Marinobacter adhaerens HP15 0.62 HP15_306 YjgF-like protein 0.25 HP15_765 threonine synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0208 endoribonuclease L-PSP 0.29 Psyr_1291 L-threonine synthase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0208 endoribonuclease L-PSP 0.29 Psyr_1291 L-threonine synthase — —
Pseudomonas putida KT2440 0.61 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.29 PP_1471 Threonine synthase — —
Pseudomonas simiae WCS417 0.61 PS417_27835 endoribonuclease 0.29 PS417_22880 threonine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.29 Pf6N2E2_3142 Threonine synthase (EC 4.2.3.1) — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS29515 RidA family protein 0.29 PFLU_RS24545 threonine synthase low > 109
Dechlorosoma suillum PS 0.61 Dsui_0312 endoribonuclease L-PSP, putative 0.23 Dsui_2904 threonine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS29515 RidA family protein 0.29 PFLU_RS24545 threonine synthase — —
Pseudomonas sp. RS175 0.61 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase 0.28 PFR28_00334 Threonine synthase — —
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.29 Pf1N1B4_3014 Threonine synthase (EC 4.2.3.1) — —
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_12475 reactive intermediate/imine deaminase 0.29 AO356_06370 threonine synthase — —
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_09285 reactive intermediate/imine deaminase 0.29 AO353_04350 threonine synthase — —
Pseudomonas fluorescens GW456-L13 0.60 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.28 PfGW456L13_1724 Threonine synthase (EC 4.2.3.1) — —
Alteromonas macleodii MIT1002 0.58 MIT1002_00109 Putative reactive intermediate deaminase TdcF 0.31 MIT1002_03084 Threonine synthase low > 70
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03565 Rid family detoxifying hydrolase 0.23 ABCV34_RS02300 threonine synthase — —
Shewanella amazonensis SB2B 0.57 Sama_0263 YjgF-like protein (RefSeq) 0.30 Sama_0907 threonine synthase (RefSeq) 0.66 51
Pseudomonas sp. S08-1 0.57 OH686_13545 RidA/YER057c/UK114 superfamily protein 0.28 OH686_17765 threonine synthase low > 80
Shewanella loihica PV-4 0.56 Shew_3500 putative endoribonuclease L-PSP (RefSeq) 0.30 Shew_1081 threonine synthase (RefSeq) 0.72 43
Azospirillum brasilense Sp245 0.56 AZOBR_RS32435 dfrA 0.26 AZOBR_RS10545 threonine synthase — —
Shewanella oneidensis MR-1 0.56 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) 0.29 SO3413 thrC threonine synthase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) 0.29 Shewana3_1141 threonine synthase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_12735 RidA family protein 0.32 CSW01_11965 threonine synthase low > 62
Dickeya dadantii 3937 0.51 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase 0.32 DDA3937_RS18405 threonine synthase low > 74
Phocaeicola dorei CL03T12C01 0.51 ABI39_RS14715 RidA family protein 0.34 ABI39_RS10440 threonine synthase low > 72
Phocaeicola vulgatus CL09T03C04 0.51 HMPREF1058_RS18400 RidA family protein 0.34 HMPREF1058_RS14730 threonine synthase 0.59 20
Dickeya dianthicola 67-19 0.51 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase 0.31 HGI48_RS18335 threonine synthase — —
Dickeya dianthicola ME23 0.51 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase 0.31 DZA65_RS19475 threonine synthase low > 75
Escherichia coli Nissle 1917 0.50 ECOLIN_RS24615 2-iminobutanoate/2-iminopropanoate deaminase 0.30 ECOLIN_RS00020 threonine synthase low > 55
Escherichia coli ECOR38 0.50 HEPCGN_10070 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.30 HEPCGN_09105 thrC threonine synthase low > 87
Escherichia fergusonii Becca 0.50 EFB2_04290 2-iminobutanoate/2-iminopropanoate deaminase 0.30 EFB2_04039 Threonine synthase low > 86
Escherichia coli ECRC62 0.50 BNILDI_07375 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.30 BNILDI_08170 thrC threonine synthase low > 75
Escherichia coli BW25113 0.50 b4243 yjgF orf, hypothetical protein (VIMSS) 0.30 b0004 thrC threonine synthase (NCBI) low > 76
Escherichia coli ECRC98 0.50 JDDGAC_15515 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.30 JDDGAC_14695 thrC threonine synthase low > 86
Escherichia coli ECRC101 0.50 MCAODC_02380 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.30 MCAODC_01615 thrC threonine synthase low > 87
Escherichia coli ECRC102 0.50 NIAGMN_09725 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.30 NIAGMN_08950 thrC threonine synthase — —
Escherichia coli ECRC100 0.50 OKFHMN_11875 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.30 OKFHMN_11100 thrC threonine synthase low > 80
Escherichia coli BL21 0.50 ECD_04111 enamine/imine deaminase, reaction intermediate detoxification 0.30 ECD_00004 L-threonine synthase low > 61
Escherichia coli ECRC99 0.50 KEDOAH_16280 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.30 KEDOAH_17055 thrC threonine synthase — —
Escherichia coli ECOR27 0.50 NOLOHH_04135 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.30 NOLOHH_03430 thrC threonine synthase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03791 2-iminobutanoate/2-iminopropanoate deaminase 0.30 OHPLBJKB_03656 Threonine synthase low > 73
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS41190 RidA family protein 0.21 QEN71_RS22400 threonine synthase — —
Klebsiella michiganensis M5al 0.49 BWI76_RS02985 reactive intermediate/imine deaminase 0.31 BWI76_RS04255 threonine synthase 0.42 22
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS22825 reactive intermediate/imine deaminase 0.35 CA265_RS23465 threonine synthase 0.81 50
Rahnella sp. WP5 0.48 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase 0.31 EX31_RS03935 threonine synthase low > 89
Pantoea sp. MT58 0.48 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase 0.30 IAI47_16205 threonine synthase 0.89 4
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF928 Endoribonuclease L-PSP 0.30 GFF1080 Threonine synthase (EC 4.2.3.1) low > 78
Enterobacter asburiae PDN3 0.47 EX28DRAFT_3444 reactive intermediate/imine deaminase 0.31 EX28DRAFT_3616 threonine synthase low > 76
Enterobacter sp. TBS_079 0.47 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase 0.31 MPMX20_00712 Threonine synthase 0.37 34
Pectobacterium carotovorum WPP14 0.47 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase 0.29 HER17_RS02805 threonine synthase low > 75
Parabacteroides merdae CL09T00C40 0.46 HMPREF1078_RS02020 RidA family protein 0.34 HMPREF1078_RS10395 threonine synthase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.44 BT1336 putative translation initiation inhibitor (NCBI ptt file) 0.35 BT2401 threonine synthase (NCBI ptt file) 0.71 10
Erwinia tracheiphila SCR3 0.44 LU632_RS20960 ridA 2-iminobutanoate/2-iminopropanoate deaminase 0.31 LU632_RS02620 thrC threonine synthase — —
Bacteroides ovatus ATCC 8483 0.44 BACOVA_00589 putative endoribonuclease L-PSP 0.35 BACOVA_03023 threonine synthase 0.57 58
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS17245 RidA family protein 0.35 ABZR88_RS18960 threonine synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_1327 endoribonuclease L-PSP, putative 0.35 Echvi_2002 threonine synthase low > 79
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS10885 RidA family protein 0.35 HMPREF1181_RS00050 threonine synthase low > 56
Serratia liquefaciens MT49 0.42 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase 0.31 IAI46_03040 threonine synthase low > 86
Ralstonia solanacearum UW163 0.39 UW163_RS22060 endoribonuclease L-PSP 0.19 UW163_RS13325 threonine synthase — —
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS20925 endoribonuclease L-PSP 0.19 RALBFv3_RS15880 threonine synthase — —
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS16710 endoribonuclease L-PSP 0.20 RR42_RS12535 threonine synthase — —
Bifidobacterium breve UCC2003 0.35 BBR_RS12070 endoribonuclease L-PSP 0.23 BBR_RS14070 threonine synthase low > 34
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05869 2-iminobutanoate/2-iminopropanoate deaminase 0.20 H281DRAFT_00811 L-threonine synthase — —
Sinorhizobium meliloti 1021 0.33 SM_b20377 translation initiation inhibitor protein 0.26 SMc00077 threonine synthase — —
Variovorax sp. OAS795 0.32 ABID97_RS22895 RidA family protein 0.21 ABID97_RS10895 threonine synthase — —
Dinoroseobacter shibae DFL-12 0.31 Dshi_0720 Endoribonuclease L-PSP (RefSeq) 0.27 Dshi_1146 threonine synthase (RefSeq) — —
Agrobacterium fabrum C58 0.30 Atu3926 translation initiation inhibitor 0.26 Atu0787 threonine synthase — —
Azospirillum sp. SherDot2 0.30 MPMX19_04018 2-aminomuconate deaminase 0.27 MPMX19_00671 Threonine synthase — —
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS08735 hypothetical protein 0.20 HSERO_RS10470 threonine synthase — —
Paraburkholderia graminis OAS925 0.28 ABIE53_000758 reactive intermediate/imine deaminase 0.20 ABIE53_002027 threonine synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.21 GFF3936 Threonine synthase (EC 4.2.3.1) — —
Rhizobium sp. OAE497 0.28 ABIE40_RS21405 RidA family protein 0.27 ABIE40_RS04230 threonine synthase — —
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_02886 RutC-family pyrimidine utilization protein C 0.26 CCNA_03510 threonine synthase — —
Caulobacter crescentus NA1000 0.27 CCNA_02886 RutC-family pyrimidine utilization protein C 0.26 CCNA_03510 threonine synthase — —
Ralstonia solanacearum GMI1000 0.26 RS_RS24425 RidA family protein 0.20 RS_RS06660 threonine synthase — —
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS17675 RidA family protein 0.21 ABZR87_RS05865 threonine synthase low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS06815 RidA family protein 0.19 RPSI07_RS17485 threonine synthase — —
Bosea sp. OAE506 0.22 ABIE41_RS17855 RidA family protein 0.27 ABIE41_RS22985 threonine synthase — —

Not shown: 8 genomes with orthologs for Xcc-8004.1205.1 only; 8 genomes with orthologs for Xcc-8004.2954.1 only