Conservation of cofitness between TX73_010150 and TX73_001825 in Rhodopseudomonas palustris CGA009

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_010150 tRNA dihydrouridine(20/20a) synthase DusA 1.0 TX73_001825 translation elongation factor 4 0.49 11
Bosea sp. OAE506 0.62 ABIE41_RS21285 tRNA dihydrouridine(20/20a) synthase DusA 0.82 ABIE41_RS03260 translation elongation factor 4 low > 77
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_01364 NIFR3-like protein 0.80 CCNA_01086 GTP-binding protein lepA low > 67
Caulobacter crescentus NA1000 0.58 CCNA_01364 NIFR3-like protein 0.80 CCNA_01086 GTP-binding protein lepA low > 66
Azospirillum brasilense Sp245 0.58 AZOBR_RS15935 tRNA-dihydrouridine synthase A 0.76 AZOBR_RS00860 elongation factor 4 low > 97
Azospirillum sp. SherDot2 0.58 MPMX19_00670 tRNA-dihydrouridine(20/20a) synthase 0.77 MPMX19_00092 Elongation factor 4 — —
Rahnella sp. WP5 0.57 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.59 EX31_RS21825 elongation factor 4 low > 89
Shewanella amazonensis SB2B 0.57 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.61 Sama_0878 GTP-binding protein LepA (RefSeq) 0.50 4
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS10515 tRNA dihydrouridine(20/20a) synthase DusA 0.80 A4249_RS10390 translation elongation factor 4 low > 48
Dickeya dadantii 3937 0.57 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.60 DDA3937_RS15745 elongation factor 4 low > 74
Dickeya dianthicola ME23 0.57 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.60 DZA65_RS16910 elongation factor 4 low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.60 HGI48_RS15830 elongation factor 4 low > 71
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 0.59 CSW01_12465 elongation factor 4 low > 62
Shewanella sp. ANA-3 0.56 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.62 Shewana3_3028 GTP-binding protein LepA (RefSeq) 0.50 25
Pectobacterium carotovorum WPP14 0.56 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.59 HER17_RS05805 translation elongation factor 4 low > 75
Shewanella loihica PV-4 0.56 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.60 Shew_1052 GTP-binding protein LepA (RefSeq) low > 60
Shewanella oneidensis MR-1 0.56 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) 0.62 SO1346 lepA GTP-binding protein LepA (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.55 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.59 IAI46_19560 elongation factor 4 low > 86
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS18350 tRNA dihydrouridine(20/20a) synthase DusA 0.60 ABZR86_RS07165 translation elongation factor 4 low > 74
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 OKGIIK_07885 Elongation factor 4 low > 52
Synechococcus elongatus PCC 7942 0.55 Synpcc7942_2066 tRNA-dihydrouridine synthase A 0.59 Synpcc7942_0479 lepA GTP-binding protein LepA low > 38
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA 0.59 LRK54_RS16955 translation elongation factor 4 low > 59
Rhodanobacter denitrificans MT42 0.55 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA 0.59 LRK55_RS16670 translation elongation factor 4 low > 63
Pantoea sp. MT58 0.55 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.58 IAI47_04870 elongation factor 4 low > 76
Rhizobium sp. OAE497 0.55 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA 0.83 ABIE40_RS01055 translation elongation factor 4 low > 107
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.59 OHPLBJKB_01138 Elongation factor 4 low > 73
Escherichia coli ECRC98 0.55 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 JDDGAC_25065 lepA translation elongation factor 4 low > 86
Escherichia coli ECRC62 0.55 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 BNILDI_11875 lepA translation elongation factor 4 low > 75
Escherichia coli ECRC102 0.55 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 NIAGMN_19170 lepA translation elongation factor 4 — —
Escherichia coli ECRC100 0.55 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 OKFHMN_21400 lepA translation elongation factor 4 low > 80
Escherichia coli ECOR27 0.55 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 NOLOHH_13075 lepA translation elongation factor 4 low > 75
Escherichia coli ECOR38 0.55 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 HEPCGN_20545 lepA translation elongation factor 4 low > 87
Escherichia coli ECRC99 0.55 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 KEDOAH_06820 lepA translation elongation factor 4 — —
Escherichia coli Nissle 1917 0.55 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.59 ECOLIN_RS14540 translation elongation factor 4 low > 55
Escherichia coli BL21 0.54 ECD_03921 tRNA-dihydrouridine synthase A 0.59 ECD_02463 back-translocating elongation factor EF4, GTPase low > 61
Escherichia coli BW25113 0.54 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.59 b2569 lepA GTP-binding protein LepA (NCBI) 0.30 30
Enterobacter sp. TBS_079 0.54 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.59 MPMX20_03440 Elongation factor 4 low > 85
Agrobacterium fabrum C58 0.54 Atu1515 hypothetical protein 0.84 Atu0241 GTP-binding protein LepA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.58 GFF2477 Translation elongation factor LepA 0.49 19
Escherichia fergusonii Becca 0.54 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.59 EFB2_01327 Elongation factor 4 low > 86
Klebsiella michiganensis M5al 0.54 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.60 BWI76_RS21335 elongation factor 4 — —
Escherichia coli ECRC101 0.54 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 MCAODC_11930 lepA translation elongation factor 4 low > 87
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.59 EX28DRAFT_0076 elongation factor 4 low > 76
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA 0.62 QEN71_RS04600 translation elongation factor 4 low > 153
Erwinia tracheiphila SCR3 0.53 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.59 LU632_RS15395 lepA translation elongation factor 4 low > 74
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.5010.1 tRNA dihydrouridine synthase A 0.59 Xcc-8004.3676.1 Translation elongation factor LepA low > 74
Lysobacter sp. OAE881 0.53 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA 0.59 ABIE51_RS13875 translation elongation factor 4 low > 62
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_2018 tRNA dihydrouridine synthase A 0.62 B158DRAFT_2184 GTP-binding protein LepA low > 40
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.63 HSERO_RS09650 elongation factor 4 low > 78
Alteromonas macleodii MIT1002 0.51 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.61 MIT1002_02715 Elongation factor 4 0.42 7
Marinobacter adhaerens HP15 0.51 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.61 HP15_781 GTP-binding protein LepA low > 73
Pseudomonas putida KT2440 0.51 PP_2169 tRNA-dihydrouridine synthase A 0.62 PP_1431 Elongation factor 4 — —
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS08700 tRNA-dihydrouridine synthase A 0.63 BPHYT_RS14380 elongation factor 4 low > 109
Ralstonia solanacearum GMI1000 0.51 RS_RS06510 tRNA dihydrouridine(20/20a) synthase DusA 0.60 RS_RS05250 elongation factor 4 — —
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.61 Psyr_3954 GTP-binding protein LepA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.61 Psyr_3954 GTP-binding protein LepA low > 86
Rhodospirillum rubrum S1H 0.50 Rru_A1621 Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) 0.72 Rru_A3365 Small GTP-binding protein domain (NCBI) — —
Acinetobacter radioresistens SK82 0.50 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase 0.57 MPMX26_02159 Elongation factor 4 low > 36
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA 0.59 ABZR87_RS10190 translation elongation factor 4 0.48 11
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase 0.63 H281DRAFT_04360 GTP-binding protein LepA low > 103
Phaeobacter inhibens DSM 17395 0.49 PGA1_c19230 tRNA-dihydrouridine synthase A 0.73 PGA1_c24090 GTP-binding protein LepA — —
Ralstonia solanacearum UW163 0.49 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA 0.60 UW163_RS11935 elongation factor 4 — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA 0.60 RALBFv3_RS14470 elongation factor 4 low > 76
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS12665 tRNA-dihydrouridine synthase A 0.60 RR42_RS14055 elongation factor 4 low > 128
Pseudomonas fluorescens SBW25 0.49 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.61 PFLU_RS05250 elongation factor 4 low > 109
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.61 PFLU_RS05250 elongation factor 4 0.30 76
Ralstonia solanacearum PSI07 0.49 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA 0.62 RPSI07_RS18990 elongation factor 4 low > 81
Dinoroseobacter shibae DFL-12 0.49 Dshi_2512 TIM-barrel protein, yjbN family (RefSeq) 0.74 Dshi_0809 GTP-binding protein LepA (RefSeq) low > 64
Paraburkholderia graminis OAS925 0.49 ABIE53_001975 tRNA-dihydrouridine synthase A 0.63 ABIE53_003038 GTP-binding protein LepA low > 113
Pseudomonas simiae WCS417 0.49 PS417_07740 tRNA-dihydrouridine synthase A 0.61 PS417_05180 elongation factor 4 — —
Variovorax sp. OAS795 0.49 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.59 ABID97_RS08350 translation elongation factor 4 low > 91
Pseudomonas stutzeri RCH2 0.49 Psest_2706 tRNA dihydrouridine synthase A 0.61 Psest_3095 GTP-binding protein LepA — —
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_57 tRNA dihydrouridine synthase A 0.60 Pf1N1B4_895 Translation elongation factor LepA — —
Pseudomonas sp. S08-1 0.48 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.62 OH686_20065 elongation factor 4 low > 80
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.61 Pf6N2E2_5423 Translation elongation factor LepA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF4791 tRNA dihydrouridine synthase A 0.62 GFF3343 Translation elongation factor LepA low > 90
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2288 tRNA dihydrouridine synthase A 0.60 Ac3H11_1569 Translation elongation factor LepA low > 79
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_02170 tRNA-dihydrouridine synthase A 0.61 AO356_17485 elongation factor 4 low > 104
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_00295 tRNA-dihydrouridine synthase A 0.61 AO353_04520 elongation factor 4 low > 101
Pseudomonas sp. RS175 0.47 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.61 PFR28_03525 Elongation factor 4 — —
Variovorax sp. SCN45 0.47 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.59 GFF3867 Translation elongation factor LepA 0.73 6
Sinorhizobium meliloti 1021 0.46 SMc04235 tRNA-dihydrouridine synthase A 0.82 SMc00349 GTP-binding protein LepA 0.78 7
Castellaniella sp019104865 MT123 0.45 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.60 ABCV34_RS08335 translation elongation factor 4 — —
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.60 PfGW456L13_4842 Translation elongation factor LepA low > 87

Not shown: 0 genomes with orthologs for TX73_010150 only; 18 genomes with orthologs for TX73_001825 only