Conservation of cofitness between SMc04403 and SMc03866 in Sinorhizobium meliloti 1021

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc04403 peptidyl-dipeptidase A protein 1.0 SMc03866 ABC transporter ATP-binding protein 0.25 12
Agrobacterium fabrum C58 0.80 Atu2664 peptidyl-dipeptidase 0.82 Atu2716 ABC transporter, nucleotide binding/ATPase protein low > 89
Rhizobium sp. OAE497 0.79 ABIE40_RS18135 M3 family metallopeptidase 0.81 ABIE40_RS18605 ABC-F family ATP-binding cassette domain-containing protein low > 107
Bosea sp. OAE506 0.56 ABIE41_RS12985 M3 family metallopeptidase 0.56 ABIE41_RS11105 ATP-binding cassette domain-containing protein low > 77
Phaeobacter inhibens DSM 17395 0.51 PGA1_c26590 peptidyl-dipeptidase Dcp 0.43 PGA1_c11290 putative holdfast attachment protein C low > 62
Rhodopseudomonas palustris CGA009 0.50 TX73_004495 M3 family metallopeptidase 0.61 TX73_011300 ATP-binding cassette domain-containing protein low > 86
Azospirillum brasilense Sp245 0.50 AZOBR_RS23485 peptidase M3 0.45 AZOBR_RS12260 elongation factor 3 low > 97
Dinoroseobacter shibae DFL-12 0.46 Dshi_2973 Peptidyl-dipeptidase Dcp (RefSeq) 0.47 Dshi_1714 ABC transporter related (RefSeq) low > 64
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_1374 Zn-dependent oligopeptidases 0.34 B158DRAFT_1925 ATPase components of ABC transporters with duplicated ATPase domains low > 40
Shewanella loihica PV-4 0.43 Shew_2161 peptidyl-dipeptidase Dcp (RefSeq) 0.32 Shew_1814 ABC transporter ATPase component (RefSeq) low > 60
Shewanella sp. ANA-3 0.42 Shewana3_2492 peptidyl-dipeptidase Dcp (RefSeq) 0.34 Shewana3_1603 ABC transporter ATPase component (RefSeq) low > 73
Shewanella amazonensis SB2B 0.42 Sama_1564 peptidyl-dipeptidase Dcp (RefSeq) 0.33 Sama_1602 ABC transporter ATPase component (RefSeq) low > 62
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_03816 peptidyl-dipeptidase DCP 0.35 CCNA_02714 ABC transporter ATP-binding protein uup low > 67
Caulobacter crescentus NA1000 0.41 CCNA_03816 peptidyl-dipeptidase DCP 0.35 CCNA_02714 ABC transporter ATP-binding protein uup low > 66
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2479 Zn-dependent oligopeptidases 0.38 Ga0059261_1367 ATPase components of ABC transporters with duplicated ATPase domains low > 68
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_00370 M3 family peptidase 0.33 OKGIIK_11805 ccmA heme ABC exporter ATP-binding protein CcmA low > 52
Alteromonas macleodii MIT1002 0.39 MIT1002_00401 Peptidyl-dipeptidase dcp 0.35 MIT1002_02038 ABC transporter ATP-binding protein uup low > 70
Shewanella oneidensis MR-1 0.39 SO3142 dcp-1 peptidyl-dipeptidase Dcp (NCBI ptt file) 0.34 SO1853 ABC transporter, ATP-binding protein (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.38 ABIE51_RS09155 M3 family metallopeptidase 0.32 ABIE51_RS12240 ribosomal protection-like ABC-F family protein low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS12525 M3 family metallopeptidase 0.38 A4249_RS10210 ABC-F family ATP-binding cassette domain-containing protein low > 48
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS06270 M3 family metallopeptidase 0.32 LRK54_RS12125 ATP-binding cassette domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS06015 M3 family metallopeptidase 0.32 LRK55_RS11860 ATP-binding cassette domain-containing protein low > 63
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.301.1 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) 0.32 Xcc-8004.2276.1 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 74
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS12690 peptidyl-dipeptidase Dcp 0.33 ABZR86_RS11545 ATP-binding cassette domain-containing protein low > 74
Serratia liquefaciens MT49 0.36 IAI46_11800 peptidyl-dipeptidase Dcp 0.33 IAI46_08825 ABC transporter ATP-binding protein low > 86
Rahnella sp. WP5 0.35 EX31_RS05310 peptidyl-dipeptidase Dcp 0.34 EX31_RS18075 ABC transporter ATP-binding protein low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_02174 Dipeptidyl carboxypeptidase 0.31 OHPLBJKB_02717 ABC transporter ATP-binding protein uup low > 73
Escherichia coli ECRC101 0.35 MCAODC_16905 dcp peptidyl-dipeptidase Dcp 0.32 MCAODC_24665 uup ABC transporter ATP-binding protein — —
Escherichia coli ECRC102 0.35 NIAGMN_25165 dcp peptidyl-dipeptidase Dcp 0.32 NIAGMN_02995 uup ABC transporter ATP-binding protein — —
Escherichia coli ECRC98 0.35 JDDGAC_03530 dcp peptidyl-dipeptidase Dcp 0.32 JDDGAC_08885 uup ABC transporter ATP-binding protein — —
Escherichia coli ECRC99 0.35 KEDOAH_27410 dcp peptidyl-dipeptidase Dcp 0.32 KEDOAH_22460 uup ABC transporter ATP-binding protein — —
Escherichia coli ECRC101 0.35 OKFHMN_01020 dcp peptidyl-dipeptidase Dcp 0.32 OKFHMN_05275 uup ABC transporter ATP-binding protein — —
Escherichia coli ECOR38 0.35 HEPCGN_26925 dcp peptidyl-dipeptidase Dcp 0.32 HEPCGN_23245 uup ABC transporter ATP-binding protein low > 85
Escherichia coli BW25113 0.35 b1538 dcp dipeptidyl carboxypeptidase II (NCBI) 0.31 b0949 uup fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) low > 76
Escherichia coli BL21 0.35 ECD_01497 dipeptidyl carboxypeptidase II 0.31 ECD_00953 replication regulatory ABC-F family DNA-binding ATPase — —
Escherichia coli ECOR27 0.35 NOLOHH_18645 dcp peptidyl-dipeptidase Dcp 0.31 NOLOHH_21830 uup ABC transporter ATP-binding protein — —
Escherichia coli ECRC62 0.35 BNILDI_17135 dcp peptidyl-dipeptidase Dcp 0.31 BNILDI_19995 uup ABC transporter ATP-binding protein — —
Escherichia fergusonii Becca 0.35 EFB2_02418 Dipeptidyl carboxypeptidase 0.32 EFB2_03122 ABC transporter ATP-binding protein uup low > 86
Escherichia coli Nissle 1917 0.34 ECOLIN_RS08805 peptidyl-dipeptidase Dcp 0.32 ECOLIN_RS04985 ABC transporter ATP-binding protein — —
Enterobacter sp. TBS_079 0.34 MPMX20_02100 Dipeptidyl carboxypeptidase 0.32 MPMX20_01600 ABC transporter ATP-binding protein uup low > 85
Enterobacter asburiae PDN3 0.34 EX28DRAFT_1449 Zn-dependent oligopeptidases 0.33 EX28DRAFT_1994 ATPase components of ABC transporters with duplicated ATPase domains low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2498 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) 0.32 GFF3240 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 78
Klebsiella michiganensis M5al 0.32 BWI76_RS15470 dipeptidyl carboxypeptidase II 0.33 BWI76_RS09930 ABC transporter ATPase low > 92
Pantoea sp. MT58 0.31 IAI47_09830 peptidyl-dipeptidase Dcp 0.32 IAI47_12685 ABC transporter ATP-binding protein low > 76
Erwinia tracheiphila SCR3 0.28 LU632_RS19470 prlC oligopeptidase A 0.31 LU632_RS09970 ABC transporter ATP-binding protein low > 74
Pseudomonas stutzeri RCH2 0.28 Psest_4320 Zn-dependent oligopeptidases 0.31 Psest_1845 ATPase components of ABC transporters with duplicated ATPase domains low > 67
Dickeya dianthicola ME23 0.28 DZA65_RS00035 oligopeptidase A 0.33 DZA65_RS13370 ABC transporter ATP-binding protein low > 75
Pectobacterium carotovorum WPP14 0.27 HER17_RS21300 oligopeptidase A 0.30 HER17_RS11985 ABC transporter ATP-binding protein low > 75
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS00240 oligopeptidase A 0.31 PFLU_RS07635 ATP-binding cassette domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.27 PFLU_RS00240 oligopeptidase A 0.31 PFLU_RS07635 ATP-binding cassette domain-containing protein low > 109
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A 0.31 Psyr_3294 ABC transporter low > 86
Vibrio cholerae E7946 ATCC 55056 0.27 CSW01_01010 oligopeptidase A 0.34 CSW01_07470 ABC transporter ATP-binding protein low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A 0.31 Psyr_3294 ABC transporter low > 86
Pseudomonas simiae WCS417 0.27 PS417_00245 oligopeptidase A 0.31 PS417_07555 ABC transporter ATPase low > 88
Dickeya dianthicola 67-19 0.27 HGI48_RS00045 oligopeptidase A 0.33 HGI48_RS12905 ABC transporter ATP-binding protein low > 71
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_624 Oligopeptidase A (EC 3.4.24.70) 0.30 PfGW456L13_4044 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 87
Dickeya dadantii 3937 0.27 DDA3937_RS21265 oligopeptidase A 0.33 DDA3937_RS12835 ABC transporter ATP-binding protein low > 74
Pseudomonas sp. RS175 0.27 PFR28_04699 Oligopeptidase A 0.31 PFR28_01107 ABC transporter ATP-binding protein uup low > 88
Pseudomonas putida KT2440 0.27 PP_0096 oligopeptidase A 0.30 PP_2131 DNA-binding ATPase involved in replication low > 96
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS07290 oligopeptidase A 0.34 HSERO_RS06980 ABC transporter ATP-binding protein low > 78
Marinobacter adhaerens HP15 0.27 HP15_3759 oligopeptidase A-like protein 0.31 HP15_1508 ABC transporter ATPase component low > 73
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_4091 Oligopeptidase A (EC 3.4.24.70) 0.31 Pf6N2E2_2293 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 103
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_1844 Oligopeptidase A (EC 3.4.24.70) 0.32 Pf1N1B4_3899 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 87
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_11120 oligopeptidase A 0.30 AO356_02345 ABC transporter ATP-binding protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_10775 oligopeptidase A 0.32 AO353_00525 ABC transporter ATP-binding protein low > 101
Pseudomonas sp. S08-1 0.26 OH686_12360 Oligopeptidase A 0.29 OH686_21905 Bis-ABC ATPase Uup low > 80
Paraburkholderia graminis OAS925 0.26 ABIE53_002798 oligopeptidase A 0.38 ABIE53_001391 ATP-binding cassette subfamily F protein uup low > 113
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS05695 M3 family metallopeptidase 0.37 QEN71_RS24715 ATP-binding cassette domain-containing protein low > 153
Dechlorosoma suillum PS 0.26 Dsui_0046 Zn-dependent oligopeptidase 0.35 Dsui_1883 ATPase component of ABC transporters with duplicated ATPase domain low > 51
Variovorax sp. OAS795 0.26 ABID97_RS14080 M3 family metallopeptidase 0.33 ABID97_RS00005 ATP-binding cassette domain-containing protein low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF4214 Oligopeptidase A (EC 3.4.24.70) 0.32 GFF1747 COG0488: ATPase components of ABC transporters with duplicated ATPase domains 0.59 45
Variovorax sp. SCN45 0.26 GFF963 Oligopeptidase A (EC 3.4.24.70) 0.34 GFF3812 Bis-ABC ATPase Uup low > 127
Cupriavidus basilensis FW507-4G11 0.25 RR42_RS07340 oligopeptidase A 0.38 RR42_RS14685 ABC transporter ATP-binding protein low > 128
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS12875 oligopeptidase A 0.37 BPHYT_RS05925 ABC transporter ATP-binding protein low > 109
Acidovorax sp. GW101-3H11 0.25 Ac3H11_4097 Oligopeptidase A (EC 3.4.24.70) 0.34 Ac3H11_1426 COG0488: ATPase components of ABC transporters with duplicated ATPase domains low > 79
Ralstonia solanacearum GMI1000 0.25 RS_RS08035 oligopeptidase A 0.35 RS_RS04825 ABC transporter ATP-binding protein low > 80
Ralstonia sp. UNC404CL21Col 0.25 ABZR87_RS13490 M3 family metallopeptidase 0.35 ABZR87_RS09735 ATP-binding cassette domain-containing protein low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS15795 oligopeptidase A 0.36 RPSI07_RS19425 ABC transporter ATP-binding protein low > 81
Ralstonia solanacearum IBSBF1503 0.25 RALBFv3_RS01690 oligopeptidase A 0.35 RALBFv3_RS14040 ABC transporter ATP-binding protein low > 76
Ralstonia solanacearum UW163 0.25 UW163_RS15000 oligopeptidase A 0.35 UW163_RS15770 ABC transporter ATP-binding protein — —
Acinetobacter radioresistens SK82 0.24 MPMX26_02685 Oligopeptidase A 0.34 MPMX26_00361 ABC transporter ATP-binding protein uup low > 36
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_00461 oligopeptidase A Metallo peptidase. MEROPS family M03A 0.38 H281DRAFT_00263 ATP-binding cassette, subfamily F, uup low > 103
Castellaniella sp019104865 MT123 0.23 ABCV34_RS04180 M3 family metallopeptidase 0.32 ABCV34_RS09725 ATP-binding cassette domain-containing protein — —

Not shown: 9 genomes with orthologs for SMc04403 only; 5 genomes with orthologs for SMc03866 only