Conservation of cofitness between RR42_RS00615 and RR42_RS15050 in Cupriavidus basilensis FW507-4G11

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00615 recombinase XerC 1.0 RR42_RS15050 DNA polymerase I 0.38 17
Ralstonia solanacearum PSI07 0.55 RPSI07_RS23690 tyrosine recombinase XerC 0.78 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum GMI1000 0.54 RS_RS00260 Tyrosine recombinase XerC 1 0.78 RS_RS11195 DNA polymerase I low > 80
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS05065 tyrosine recombinase XerC 0.78 ABZR87_RS15680 DNA polymerase I 0.52 14
Ralstonia solanacearum UW163 0.52 UW163_RS03905 tyrosine recombinase XerC 0.78 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS09675 tyrosine recombinase XerC 0.78 RALBFv3_RS03750 DNA polymerase I 0.39 12
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS00355 tyrosine recombinase XerC 0.66 QEN71_RS17885 DNA polymerase I — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS01655 tyrosine recombinase XerC 0.65 BPHYT_RS33610 DNA polymerase I — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_02202 integrase/recombinase XerC 0.64 H281DRAFT_06022 DNA polymerase I — —
Paraburkholderia graminis OAS925 0.43 ABIE53_000426 integrase/recombinase XerC 0.65 ABIE53_004852 DNA polymerase-1 — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS21475 recombinase XerC 0.71 HSERO_RS02260 DNA polymerase I low > 78
Dechlorosoma suillum PS 0.40 Dsui_0651 tyrosine recombinase XerC 0.60 Dsui_0459 DNA polymerase I low > 51
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1995 Tyrosine recombinase XerC 0.57 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF547 Tyrosine recombinase XerC 0.57 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Castellaniella sp019104865 MT123 0.37 ABCV34_RS13455 tyrosine recombinase XerC 0.57 ABCV34_RS02195 DNA polymerase I low > 48
Variovorax sp. SCN45 0.36 GFF4490 Site-specific tyrosine recombinase XerC 0.59 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Variovorax sp. OAS795 0.36 ABID97_RS06150 tyrosine recombinase XerC 0.59 ABID97_RS09180 DNA polymerase I 0.47 54
Pseudomonas sp. S08-1 0.34 OH686_13785 tyrosine recombinase XerC 0.51 OH686_12215 DNA polymerase I low > 80
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_09050 recombinase XerC 0.49 AO353_10930 DNA polymerase I 0.33 25
Pseudomonas stutzeri RCH2 0.33 Psest_3767 tyrosine recombinase XerC 0.49 Psest_4219 DNA polymerase I 0.45 1
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_842 Tyrosine recombinase XerC 0.48 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_12725 recombinase XerC 0.49 AO356_11465 DNA polymerase I 0.39 12
Pseudomonas sp. RS175 0.32 PFR28_04378 Tyrosine recombinase XerC 0.49 PFR28_04624 DNA polymerase I 0.28 35
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4416 Tyrosine recombinase XerC 0.49 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.51 2
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.47 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.47 Psyr_0270 DNA polymerase I low > 86
Pseudomonas putida KT2440 0.32 PP_5230 Tyrosine recombinase XerC 0.50 PP_0123 DNA polymerase I, 5 0.42 7
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2171 Tyrosine recombinase XerC 0.48 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS15025 tyrosine recombinase XerC 0.52 ABZR86_RS17015 DNA polymerase I low > 74
Pantoea sp. MT58 0.32 IAI47_18400 tyrosine recombinase XerC 0.49 IAI47_00430 DNA polymerase I 0.35 46
Serratia liquefaciens MT49 0.32 IAI46_00725 tyrosine recombinase XerC 0.50 IAI46_24985 DNA polymerase I low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF239 Tyrosine recombinase XerC 0.49 GFF2216 DNA polymerase I (EC 2.7.7.7) — —
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_15325 xerC tyrosine recombinase XerC 0.51 OKGIIK_16785 polA DNA polymerase I — —
Klebsiella michiganensis M5al 0.31 BWI76_RS01210 tyrosine recombinase XerC 0.48 BWI76_RS00355 DNA polymerase I low > 92
Rahnella sp. WP5 0.31 EX31_RS15165 tyrosine recombinase XerC 0.48 EX31_RS15905 DNA polymerase I low > 89
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.49 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Lysobacter sp. OAE881 0.31 ABIE51_RS03035 tyrosine recombinase XerC 0.50 ABIE51_RS02010 DNA polymerase I low > 62
Escherichia coli ECRC98 0.31 JDDGAC_18045 xerC tyrosine recombinase XerC 0.50 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC102 0.31 NIAGMN_12175 xerC tyrosine recombinase XerC 0.50 NIAGMN_11905 polA DNA polymerase I — —
Dickeya dadantii 3937 0.31 DDA3937_RS19890 tyrosine recombinase XerC 0.50 DDA3937_RS00105 DNA polymerase I — —
Escherichia coli ECRC100 0.31 OKFHMN_14420 xerC tyrosine recombinase XerC 0.50 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC99 0.31 KEDOAH_13730 xerC tyrosine recombinase XerC 0.50 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC101 0.31 MCAODC_04925 xerC tyrosine recombinase XerC 0.50 MCAODC_04650 polA DNA polymerase I — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS08300 tyrosine recombinase XerC 0.51 LRK55_RS06585 DNA polymerase I 0.60 5
Escherichia coli Nissle 1917 0.31 ECOLIN_RS21875 tyrosine recombinase XerC 0.49 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECOR27 0.31 NOLOHH_06550 xerC tyrosine recombinase XerC 0.50 NOLOHH_06280 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4480 tyrosine recombinase XerC 0.49 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli BW25113 0.31 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.50 b3863 polA DNA polymerase I (NCBI) 0.36 57
Escherichia fergusonii Becca 0.31 EFB2_04826 Tyrosine recombinase XerC 0.49 EFB2_04753 DNA polymerase I — —
Escherichia coli BL21 0.31 ECD_03687 site-specific tyrosine recombinase 0.50 ECD_03749 5 — —
Escherichia coli ECOR38 0.31 HEPCGN_13125 xerC tyrosine recombinase XerC 0.49 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_04239 Tyrosine recombinase XerC 0.49 OHPLBJKB_04189 DNA polymerase I — —
Shewanella loihica PV-4 0.31 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.49 Shew_3714 DNA polymerase I (RefSeq) low > 60
Marinobacter adhaerens HP15 0.31 HP15_250 site-specific tyrosine recombinase XerC 0.48 HP15_293 DNA polymerase I low > 73
Escherichia coli ECRC62 0.31 BNILDI_04985 xerC tyrosine recombinase XerC 0.50 BNILDI_05250 polA DNA polymerase I — —
Dickeya dianthicola 67-19 0.31 HGI48_RS20045 tyrosine recombinase XerC 0.50 HGI48_RS21260 DNA polymerase I — —
Dickeya dianthicola ME23 0.30 DZA65_RS21090 tyrosine recombinase XerC 0.49 DZA65_RS22235 DNA polymerase I — —
Shewanella sp. ANA-3 0.30 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.51 Shewana3_4109 DNA polymerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.30 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.50 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS01350 tyrosine recombinase XerC 0.49 HER17_RS21470 DNA polymerase I — —
Shewanella amazonensis SB2B 0.30 Sama_3247 integrase/recombinase XerC (RefSeq) 0.50 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Enterobacter sp. TBS_079 0.30 MPMX20_04465 Tyrosine recombinase XerC 0.49 MPMX20_04601 DNA polymerase I 0.28 81
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS08535 tyrosine recombinase XerC 0.51 LRK54_RS06840 DNA polymerase I low > 59
Erwinia tracheiphila SCR3 0.29 LU632_RS24135 xerC tyrosine recombinase XerC 0.49 LU632_RS23870 polA DNA polymerase I — —
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.49 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.49 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas simiae WCS417 0.29 PS417_27595 recombinase XerC 0.49 PS417_00405 DNA polymerase I low > 88
Alteromonas macleodii MIT1002 0.28 MIT1002_00157 Tyrosine recombinase XerC 0.50 MIT1002_00014 DNA polymerase I low > 70
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.52 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_00650 tyrosine recombinase XerC 0.52 CSW01_00560 DNA polymerase I low > 62
Bacteroides ovatus ATCC 8483 0.23 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein 0.34 BACOVA_01357 DNA-directed DNA polymerase 0.24 36
Rhodospirillum rubrum S1H 0.22 Rru_A1220 Phage integrase (NCBI) 0.37 Rru_A3514 DNA polymerase A (NCBI) — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_5002 xerC hypothetical protein (NCBI) 0.37 Dshi_2909 DNA polymerase I (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.22 TX73_000945 tyrosine recombinase XerC 0.36 TX73_024545 DNA polymerase I low > 86
Azospirillum brasilense Sp245 0.22 AZOBR_RS03965 tyrosine recombinase XerC 0.37 AZOBR_RS30685 DNA polymerase — —
Rhizobium sp. OAE497 0.21 ABIE40_RS17950 tyrosine recombinase XerC 0.38 ABIE40_RS00490 DNA polymerase I low > 107
Magnetospirillum magneticum AMB-1 0.21 AMB_RS21485 tyrosine recombinase XerC 0.38 AMB_RS21305 DNA polymerase I — —
Bosea sp. OAE506 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.35 ABIE41_RS03570 DNA polymerase I 0.50 18
Azospirillum sp. SherDot2 0.21 MPMX19_02110 Tyrosine recombinase XerC 0.37 MPMX19_04869 DNA polymerase I — —
Phaeobacter inhibens DSM 17395 0.21 PGA1_c05760 putative tyrosine recombinase XerC 0.39 PGA1_c31780 DNA polymerase I 0.50 6
Sinorhizobium meliloti 1021 0.20 SMc02489 site-specific tyrosine recombinase XerC 0.38 SMc02850 DNA polymerase I — —
Agrobacterium fabrum C58 0.20 Atu2628 site-specific recombinase 0.38 Atu0110 DNA polymerase I — —
Brevundimonas sp. GW460-12-10-14-LB2 0.19 A4249_RS12210 tyrosine recombinase XerC 0.40 A4249_RS13840 DNA polymerase I — —
Sphingomonas koreensis DSMZ 15582 0.19 Ga0059261_2764 Site-specific recombinase XerD 0.36 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.35 21

Not shown: 1 genomes with orthologs for RR42_RS00615 only; 15 genomes with orthologs for RR42_RS15050 only