Conservation of cofitness between Psyr_0025 and Psyr_4270 in Pseudomonas syringae pv. syringae B728a

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0025 shikimate dehydrogenase 1.0 Psyr_4270 serine hydroxymethyltransferase 0.68 9
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0025 shikimate dehydrogenase 1.00 Psyr_4270 serine hydroxymethyltransferase 0.56 61
Pseudomonas simiae WCS417 0.83 PS417_00125 shikimate dehydrogenase 0.98 PS417_24280 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.97 Pf1N1B4_2778 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.97 PfGW456L13_1451 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_10670 shikimate dehydrogenase 0.97 AO353_14020 serine hydroxymethyltransferase — —
Pseudomonas sp. RS175 0.81 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.96 PFR28_03786 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25 0.81 PFLU_RS00120 shikimate dehydrogenase 0.98 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS00120 shikimate dehydrogenase 0.98 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_11315 shikimate dehydrogenase 0.97 AO356_15725 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.97 Pf6N2E2_5082 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas putida KT2440 0.77 PP_0074 shikimate 5-dehydrogenase 0.96 PP_0671 serine hydroxymethyltransferase — —
Pseudomonas sp. S08-1 0.75 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.93 OH686_16230 Serine hydroxymethyltransferase — —
Pseudomonas stutzeri RCH2 0.73 Psest_0029 shikimate 5-dehydrogenase 0.91 Psest_3404 Glycine/serine hydroxymethyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_00280 shikimate dehydrogenase 0.73 CSW01_04820 serine hydroxymethyltransferase low > 62
Dechlorosoma suillum PS 0.56 Dsui_0443 shikimate 5-dehydrogenase 0.65 Dsui_1265 glycine/serine hydroxymethyltransferase — —
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS01990 shikimate 5-dehydrogenase 0.65 HSERO_RS06140 serine hydroxymethyltransferase — —
Shewanella sp. ANA-3 0.53 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.77 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) 0.90 36
Marinobacter adhaerens HP15 0.52 HP15_3750 shikimate dehydrogenase 0.81 HP15_489 glycine hydroxymethyltransferase — —
Shewanella loihica PV-4 0.51 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.79 Shew_1185 glyA serine hydroxymethyltransferase (RefSeq) 0.83 12
Shewanella oneidensis MR-1 0.50 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.77 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) 0.85 56
Escherichia coli BW25113 0.49 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.75 b2551 glyA serine hydroxymethyltransferase (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.75 OHPLBJKB_01156 Serine hydroxymethyltransferase low > 73
Escherichia coli BL21 0.49 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.75 ECD_02443 serine hydroxymethyltransferase 0.68 4
Escherichia coli Nissle 1917 0.49 ECOLIN_RS18840 shikimate dehydrogenase 0.75 ECOLIN_RS14440 serine hydroxymethyltransferase — —
Escherichia coli ECOR27 0.49 NOLOHH_09355 aroE shikimate dehydrogenase 0.75 NOLOHH_13185 glyA serine hydroxymethyltransferase 0.86 36
Escherichia coli ECRC62 0.49 BNILDI_02165 aroE shikimate dehydrogenase 0.75 BNILDI_11985 glyA serine hydroxymethyltransferase low > 75
Escherichia coli ECRC100 0.49 OKFHMN_17565 aroE shikimate dehydrogenase 0.74 OKFHMN_21510 glyA serine hydroxymethyltransferase 0.96 14
Escherichia coli ECRC101 0.49 MCAODC_08085 aroE shikimate dehydrogenase 0.74 MCAODC_12040 glyA serine hydroxymethyltransferase low > 87
Escherichia coli ECRC99 0.49 KEDOAH_10585 aroE shikimate dehydrogenase 0.74 KEDOAH_06710 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC102 0.49 NIAGMN_15325 aroE shikimate dehydrogenase 0.74 NIAGMN_19280 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC98 0.49 JDDGAC_21185 aroE shikimate dehydrogenase 0.74 JDDGAC_25175 glyA serine hydroxymethyltransferase — —
Pantoea sp. MT58 0.49 IAI47_02315 shikimate dehydrogenase 0.75 IAI47_04960 serine hydroxymethyltransferase — —
Paraburkholderia graminis OAS925 0.48 ABIE53_003560 shikimate dehydrogenase 0.63 ABIE53_000888 glycine hydroxymethyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.63 H281DRAFT_04726 serine hydroxymethyltransferase — —
Ralstonia solanacearum GMI1000 0.48 RS_RS13890 shikimate dehydrogenase 0.64 RS_RS03670 serine hydroxymethyltransferase — —
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS16975 shikimate 5-dehydrogenase 0.63 BPHYT_RS03725 serine hydroxymethyltransferase 0.56 76
Escherichia fergusonii Becca 0.48 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.75 EFB2_01345 Serine hydroxymethyltransferase — —
Ralstonia solanacearum UW163 0.48 UW163_RS07680 shikimate dehydrogenase 0.64 UW163_RS00670 serine hydroxymethyltransferase — —
Ralstonia solanacearum PSI07 0.48 RPSI07_RS11300 shikimate dehydrogenase 0.63 RPSI07_RS20330 serine hydroxymethyltransferase 0.66 32
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS05945 shikimate dehydrogenase 0.64 RALBFv3_RS12895 serine hydroxymethyltransferase — —
Escherichia coli ECOR38 0.47 HEPCGN_16385 aroE shikimate dehydrogenase 0.75 HEPCGN_20655 glyA serine hydroxymethyltransferase 0.82 25
Dickeya dianthicola ME23 0.47 DZA65_RS20315 shikimate dehydrogenase 0.77 DZA65_RS16775 serine hydroxymethyltransferase — —
Enterobacter sp. TBS_079 0.47 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.74 MPMX20_03420 Serine hydroxymethyltransferase — —
Shewanella amazonensis SB2B 0.47 Sama_0052 shikimate dehydrogenase (RefSeq) 0.76 Sama_1014 glyA serine hydroxymethyltransferase (RefSeq) 0.69 54
Klebsiella michiganensis M5al 0.47 BWI76_RS25645 shikimate dehydrogenase 0.74 BWI76_RS21225 serine hydroxymethyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.74 GFF2447 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01605 shikimate dehydrogenase 0.64 ABZR87_RS08955 serine hydroxymethyltransferase — —
Dickeya dianthicola 67-19 0.46 HGI48_RS19190 shikimate dehydrogenase 0.77 HGI48_RS15700 serine hydroxymethyltransferase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS17645 shikimate dehydrogenase 0.65 RR42_RS15485 serine hydroxymethyltransferase — —
Dickeya dadantii 3937 0.46 DDA3937_RS19100 shikimate dehydrogenase 0.77 DDA3937_RS15600 serine hydroxymethyltransferase — —
Serratia liquefaciens MT49 0.46 IAI46_23240 shikimate dehydrogenase 0.76 IAI46_19395 serine hydroxymethyltransferase — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS02250 shikimate dehydrogenase 0.77 HER17_RS05950 serine hydroxymethyltransferase — —
Enterobacter asburiae PDN3 0.46 EX28DRAFT_0046 shikimate dehydrogenase 0.74 EX28DRAFT_0099 Glycine/serine hydroxymethyltransferase — —
Erwinia tracheiphila SCR3 0.44 LU632_RS22445 aroE shikimate dehydrogenase 0.74 LU632_RS17915 serine hydroxymethyltransferase — —
Rahnella sp. WP5 0.44 EX31_RS15950 shikimate dehydrogenase 0.76 EX31_RS20585 serine hydroxymethyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 GFF5152 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Castellaniella sp019104865 MT123 0.40 ABCV34_RS11620 shikimate dehydrogenase 0.74 ABCV34_RS06400 serine hydroxymethyltransferase low > 48
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 Ac3H11_2921 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Alteromonas macleodii MIT1002 0.37 MIT1002_00029 Shikimate dehydrogenase 0.71 MIT1002_02702 Serine hydroxymethyltransferase — —
Variovorax sp. SCN45 0.37 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 GFF560 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.78 MPMX26_02049 Serine hydroxymethyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.75 Xcc-8004.4398.1 Serine hydroxymethyltransferase (EC 2.1.2.1) 0.82 24
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.64 ABID97_RS17890 serine hydroxymethyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS14985 shikimate dehydrogenase 0.76 ABZR86_RS10715 serine hydroxymethyltransferase 0.94 48
Rhodanobacter denitrificans MT42 0.33 LRK55_RS08360 shikimate dehydrogenase 0.73 LRK55_RS04400 serine hydroxymethyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS08595 shikimate dehydrogenase 0.73 LRK54_RS04625 serine hydroxymethyltransferase low > 59
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_15365 aroE shikimate dehydrogenase 0.74 OKGIIK_11440 glyA serine hydroxymethyltransferase low > 52
Lysobacter sp. OAE881 0.31 ABIE51_RS01815 shikimate dehydrogenase 0.75 ABIE51_RS04620 serine hydroxymethyltransferase low > 62
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0259 shikimate 5-dehydrogenase 0.74 B158DRAFT_1908 Glycine/serine hydroxymethyltransferase low > 40
Agrobacterium fabrum C58 0.23 Atu0003 shikimate 5-dehydrogenase 0.61 Atu1165 serine hydroxymethyltransferase — —
Sinorhizobium meliloti 1021 0.22 SMc02791 shikimate 5-dehydrogenase 0.59 SMc01770 serine hydroxymethyltransferase — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c35150 shikimate dehydrogenase AroE 0.59 PGA1_c11870 serine hydroxymethyltransferase GlyA — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.57 DVU1203 glyA serine hydroxymethyltransferase (TIGR) — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS01765 shikimate 5-dehydrogenase 0.59 AZOBR_RS10015 serine hydroxymethyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.58 DvMF_3097 glyA serine hydroxymethyltransferase (RefSeq) — —
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.56 CCNA_01419 serine hydroxymethyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.56 CCNA_01419 serine hydroxymethyltransferase low > 67
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.60 ABIE40_RS06715 serine hydroxymethyltransferase — —
Azospirillum sp. SherDot2 0.18 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.58 MPMX19_00727 Serine hydroxymethyltransferase 2 — —
Magnetospirillum magneticum AMB-1 0.18 AMB_RS23010 shikimate dehydrogenase 0.55 AMB_RS11815 serine hydroxymethyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS13660 shikimate dehydrogenase 0.54 A4249_RS06040 serine hydroxymethyltransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.52 CA265_RS19165 serine hydroxymethyltransferase — —

Not shown: 9 genomes with orthologs for Psyr_0025 only; 9 genomes with orthologs for Psyr_4270 only