Conservation of cofitness between Psyr_0003 and Psyr_3008 in Pseudomonas syringae pv. syringae B728a

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0003 DNA replication and repair protein RecF 1.0 Psyr_3008 Undecaprenyl-diphosphatase 0.31 20
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0003 DNA replication and repair protein RecF 1.00 Psyr_3008 Undecaprenyl-diphosphatase 0.27 40
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_10480 recombinase RecF 0.87 AO353_25760 UDP pyrophosphate phosphatase low > 101
Pseudomonas fluorescens SBW25 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.87 PFLU_RS13705 undecaprenyl-diphosphate phosphatase low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.87 PFLU_RS13705 undecaprenyl-diphosphate phosphatase low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.86 Pf1N1B4_4741 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 87
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_11635 recombinase RecF 0.87 AO356_27775 UDP pyrophosphate phosphatase low > 104
Pseudomonas sp. DMC3 0.93 GFF578 DNA replication and repair protein RecF 0.88 GFF2690 Undecaprenyl-diphosphatase low > 89
Pseudomonas orientalis W4I3 0.93 QF045_RS02960 DNA replication/repair protein RecF 0.87 QF045_RS16910 undecaprenyl-diphosphate phosphatase low > 93
Pseudomonas lactucae CFBP13502 0.93 GEMAOFIL_00183 DNA replication and repair protein RecF 0.89 GEMAOFIL_03252 Undecaprenyl-diphosphatase low > 96
Pseudomonas sp. SVBP6 0.93 COO64_RS02120 recF DNA replication/repair protein RecF 0.88 COO64_RS14725 undecaprenyl-diphosphate phosphatase low > 93
Pseudomonas sp. RS175 0.93 PFR28_04593 DNA replication and repair protein RecF 0.88 PFR28_01689 Undecaprenyl-diphosphatase low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.86 Pf6N2E2_773 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_664 DNA recombination and repair protein RecF 0.86 PfGW456L13_3016 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 87
Pseudomonas sp. BP01 0.91 JOY50_RS08340 recF DNA replication/repair protein RecF 0.85 JOY50_RS05735 undecaprenyl-diphosphate phosphatase low > 84
Pseudomonas simiae WCS417 0.90 PS417_00015 recombinase RecF 0.88 PS417_13065 UDP pyrophosphate phosphatase low > 88
Pseudomonas putida KT2440 0.89 PP_0012 DNA replication and repair protein 0.84 PP_2862 Undecaprenyl-diphosphatase low > 96
Pseudomonas segetis P6 0.87 MPMX49_00255 DNA replication and repair protein RecF 0.85 MPMX49_02210 Undecaprenyl-diphosphatase low > 75
Pseudomonas sp. S08-1 0.85 OH686_12620 DNA recombination and repair protein RecF 0.83 OH686_00730 undecaprenyl-diphosphatase UppP — —
Pseudomonas aeruginosa PA14 0.82 IKLFDK_25545 DNA replication/repair protein RecF 0.82 IKLFDK_09565 undecaprenyl-diphosphate phosphatase low > 98
Pseudomonas stutzeri RCH2 0.77 Psest_0004 recF protein 0.86 Psest_2113 undecaprenyl-diphosphatase UppP — —
Shewanella oneidensis MR-1 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.50 SO4274 undecaprenol kinase, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.27 Shewana3_3079 undecaprenyl pyrophosphate phosphatase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.25 Sama_0831 undecaprenyl pyrophosphate phosphatase (RefSeq) low > 62
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.27 Shew_1004 undecaprenyl pyrophosphate phosphatase (RefSeq) 0.50 27
Pectobacterium carotovorum WPP14 0.39 HER17_RS00015 DNA replication/repair protein RecF 0.37 HER17_RS04015 undecaprenyl-diphosphate phosphatase low > 75
Serratia liquefaciens MT49 0.39 IAI46_00015 DNA replication/repair protein RecF 0.36 IAI46_22080 undecaprenyl-diphosphate phosphatase low > 87
Dickeya dadantii 3937 0.38 DDA3937_RS21285 DNA replication/repair protein RecF 0.35 DDA3937_RS17125 undecaprenyl-diphosphate phosphatase low > 74
Dickeya dianthicola ME23 0.38 DZA65_RS00015 DNA replication/repair protein RecF 0.36 DZA65_RS18260 undecaprenyl-diphosphate phosphatase low > 75
Rahnella sp. WP5 0.38 EX31_RS05975 DNA replication/repair protein RecF 0.36 EX31_RS08165 undecaprenyl-diphosphate phosphatase low > 89
Dickeya dianthicola 67-19 0.38 HGI48_RS00015 DNA replication/repair protein RecF 0.36 HGI48_RS17175 undecaprenyl-diphosphate phosphatase low > 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF 0.39 OHPLBJKB_00647 Undecaprenyl-diphosphatase low > 74
Escherichia coli ECRC100 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF 0.39 OKFHMN_18705 bacA undecaprenyl-diphosphate phosphatase low > 79
Escherichia coli Nissle 1917 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF 0.39 ECOLIN_RS17655 undecaprenyl-diphosphate phosphatase low > 55
Escherichia coli ECRC62 0.38 BNILDI_04365 recF DNA replication/repair protein RecF 0.39 BNILDI_01020 bacA undecaprenyl-diphosphate phosphatase low > 75
Escherichia coli ECOR27 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF 0.39 NOLOHH_10495 bacA undecaprenyl-diphosphate phosphatase low > 76
Escherichia coli ECOR38 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF 0.39 HEPCGN_17560 bacA undecaprenyl-diphosphate phosphatase low > 88
Escherichia coli ECRC98 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF 0.39 JDDGAC_22340 bacA undecaprenyl-diphosphate phosphatase low > 87
Escherichia coli ECRC101 0.38 MCAODC_05535 recF DNA replication/repair protein RecF 0.39 MCAODC_09220 bacA undecaprenyl-diphosphate phosphatase low > 87
Escherichia coli BW25113 0.38 b3700 recF recombination protein F (NCBI) 0.39 b3057 bacA undecaprenyl pyrophosphate phosphatase (NCBI) low > 76
Escherichia coli ECRC102 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF 0.39 NIAGMN_16470 bacA undecaprenyl-diphosphate phosphatase low > 80
Escherichia coli ECRC99 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF 0.39 KEDOAH_09440 bacA undecaprenyl-diphosphate phosphatase — —
Escherichia fergusonii Becca 0.38 EFB2_00003 DNA replication and repair protein RecF 0.39 EFB2_00754 Undecaprenyl-diphosphatase low > 86
Escherichia coli BL21 0.38 ECD_03583 gap repair protein 0.39 ECD_02927 undecaprenyl pyrophosphate phosphatase low > 61
Enterobacter asburiae PDN3 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF 0.40 EX28DRAFT_3085 undecaprenyl-diphosphatase UppP low > 76
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00065 DNA replication and repair protein RecF 0.25 CSW01_02795 undecaprenyl-diphosphatase low > 62
Klebsiella pneumoniae MKP103 0.37 KDGMDA_08670 DNA replication/repair protein RecF 0.39 KDGMDA_05290 undecaprenyl-diphosphate phosphatase low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF1756 DNA recombination and repair protein RecF 0.40 GFF3171 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 78
Enterobacter sp. TBS_079 0.37 MPMX20_00003 DNA replication and repair protein RecF 0.40 MPMX20_03894 Undecaprenyl-diphosphatase low > 85
Pantoea sp. MT58 0.37 IAI47_00015 DNA replication/repair protein RecF 0.39 IAI47_03080 undecaprenyl-diphosphate phosphatase low > 76
Klebsiella michiganensis M5al 0.37 BWI76_RS00010 DNA replication and repair protein RecF 0.40 BWI76_RS24480 undecaprenyl-diphosphatase low > 92
Marinobacter adhaerens HP15 0.36 HP15_3705 DNA replication and repair protein recF 0.23 HP15_3402 undecaprenyl pyrophosphate phosphatase — —
Erwinia amylovora T8 0.36 OLJFJH_05150 DNA replication/repair protein RecF 0.38 OLJFJH_07615 undecaprenyl-diphosphate phosphatase low > 58
Erwinia tracheiphila SCR3 0.36 LU632_RS00015 recF DNA replication/repair protein RecF 0.40 LU632_RS20695 bacA undecaprenyl-diphosphate phosphatase low > 73
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_09800 recF DNA replication/repair protein RecF 0.40 IJEDHG_14365 bacA undecaprenyl-diphosphate phosphatase — —
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS19305 DNA replication/repair protein RecF 0.39 PagCFBP13505_RS11900 undecaprenyl-diphosphate phosphatase low > 74
Alteromonas macleodii MIT1002 0.35 MIT1002_00003 DNA replication and repair protein RecF 0.25 MIT1002_00743 Undecaprenyl-diphosphatase — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.23 B158DRAFT_0833 undecaprenyl-diphosphatase UppP — —
Acinetobacter radioresistens SK82 0.30 MPMX26_00003 DNA replication and repair protein RecF 0.41 MPMX26_02574 Undecaprenyl-diphosphatase low > 36
Acinetobacter baumannii LAC-4 0.30 RR41_RS00015 DNA replication/repair protein RecF 0.47 RR41_RS03660 undecaprenyl-diphosphate phosphatase low > 55
Rhodanobacter denitrificans MT42 0.28 LRK55_RS08240 DNA replication/repair protein RecF 0.28 LRK55_RS07875 undecaprenyl-diphosphate phosphatase low > 63
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS08475 DNA replication/repair protein RecF 0.28 LRK54_RS08125 undecaprenyl-diphosphate phosphatase low > 59
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15255 recF DNA replication/repair protein RecF 0.22 OKGIIK_14940 undecaprenyl-diphosphate phosphatase low > 53
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS00015 DNA replication/repair protein RecF 0.26 LRK53_RS00300 undecaprenyl-diphosphate phosphatase — —
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS15145 DNA replication/repair protein RecF 0.26 ABZR86_RS15435 undecaprenyl-diphosphate phosphatase — —
Lysobacter sp. OAE881 0.25 ABIE51_RS00765 DNA replication/repair protein RecF 0.26 ABIE51_RS01460 undecaprenyl-diphosphate phosphatase — —
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.26 Xcc-8004.245.1 Undecaprenyl-diphosphatase (EC 3.6.1.27) — —
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.21 HMPREF1078_RS17115 undecaprenyl-diphosphate phosphatase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1156 recF protein 0.19 Echvi_3275 Uncharacterized bacitracin resistance protein — —
Fusobacterium nucleatum SB010 0.17 HUW76_00025 DNA replication/repair protein RecF 0.30 HUW76_01305 undecaprenyl-diphosphate phosphatase — —
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.33 HMPREF1181_RS01715 undecaprenyl-diphosphate phosphatase — —
Bacteroides ovatus ATCC 8483 0.17 BACOVA_05088 DNA replication and repair protein RecF 0.32 BACOVA_02913 undecaprenyl-diphosphatase UppP — —
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS24760 DNA replication and repair protein RecF 0.33 CA265_RS16150 UDP-diphosphatase low > 88
Bacteroides thetaiotaomicron VPI-5482 0.16 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.22 BT3212 putative bacitracin resistance protein (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.21 HMPREF1058_RS11310 undecaprenyl-diphosphate phosphatase low > 67
Rhizobium sp. OAE497 0.16 ABIE40_RS00200 DNA replication/repair protein RecF 0.30 ABIE40_RS01320 undecaprenyl-diphosphate phosphatase — —
Agrobacterium fabrum C58 0.16 Atu0073 recF-like protein 0.40 Atu0294 undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein low > 89
Phocaeicola dorei CL03T12C01 0.15 ABI39_RS13135 DNA replication and repair protein RecF 0.20 ABI39_RS05620 undecaprenyl-diphosphate phosphatase low > 72
Cellulophaga baltica 18 0.15 M666_RS11055 DNA replication and repair protein RecF 0.21 M666_RS03055 undecaprenyl-diphosphate phosphatase 0.51 54
Azospirillum sp. SherDot2 0.15 MPMX19_02716 DNA replication and repair protein RecF 0.41 MPMX19_02659 Undecaprenyl-diphosphatase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.34 ABZR88_RS02060 undecaprenyl-diphosphate phosphatase — —
Bosea sp. OAE506 0.15 ABIE41_RS04170 DNA replication/repair protein RecF 0.39 ABIE41_RS03125 undecaprenyl-diphosphate phosphatase — —
Sinorhizobium meliloti 1021 0.15 SMc02863 recombination protein F 0.35 SMc00408 UDP pyrophosphate phosphatase — —
Bifidobacterium breve UCC2003 0.14 BBR_RS10265 DNA replication and repair protein RecF 0.26 BBR_RS15600 undecaprenyl-diphosphate phosphatase — —
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_2727 DNA replication and repair protein RecF 0.40 Ga0059261_1796 Undecaprenyl-diphosphatase (EC 3.6.1.27) — —
Sphingobium sp. HT1-2 0.13 GFF730 DNA recombination and repair protein RecF 0.33 GFF762 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 95
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_17475 DNA replication and repair protein RecF 0.33 CA264_04645 UDP-diphosphatase — —
Magnetospirillum magneticum AMB-1 0.12 AMB_RS03285 DNA replication and repair protein RecF 0.41 AMB_RS07820 UDP pyrophosphate phosphatase — —
Rhodopseudomonas palustris CGA009 0.12 TX73_000015 DNA replication/repair protein RecF 0.38 TX73_000225 undecaprenyl-diphosphate phosphatase — —
Xanthobacter sp. DMC5 0.12 GFF3876 DNA replication and repair protein RecF 0.35 GFF3716 Undecaprenyl-diphosphatase — —
Dinoroseobacter shibae DFL-12 0.11 Dshi_3375 SMC domain protein (RefSeq) 0.19 Dshi_3593 Bacitracin resistance protein BacA (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.11 PGA1_c00030 DNA replication and repair protein RecF 0.18 PGA1_c36070 undecaprenyl-diphosphatase UppP — —
Caulobacter crescentus NA1000 0.11 CCNA_00158 DNA replication and repair protein recF 0.33 CCNA_03719 undecaprenyl diphosphatase — —
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_00158 DNA replication and repair protein recF 0.33 CCNA_03719 undecaprenyl diphosphatase — —
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.24 Rv2136c Possible conserved transmembrane protein low > 58
Rhodospirillum rubrum S1H 0.10 Rru_A0003 RecF protein (NCBI) 0.59 Rru_A1803 Undecaprenol kinase (NCBI) — —
Synechocystis sp000284455 PCC 6803 0.10 SGL_RS07025 DNA replication/repair protein RecF 0.23 SGL_RS13530 undecaprenyl-diphosphate phosphatase — —
Synechococcus elongatus PCC 7942 0.09 Synpcc7942_2250 recF recombination protein F 0.25 Synpcc7942_1967 cacA undecaprenyl pyrophosphate phosphatase — —

Not shown: 2 genomes with orthologs for Psyr_0003 only; 23 genomes with orthologs for Psyr_3008 only