| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0045 | | oligopeptidase A, Metallo peptidase, MEROPS family M03A | 1.0 | Psyr_0790 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | 0.32 | 16 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0045 | | oligopeptidase A, Metallo peptidase, MEROPS family M03A | 1.00 | Psyr_0790 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.92 | PFLU_RS00240 | | oligopeptidase A | 0.87 | PFLU_RS03905 | | NAD(P)/FAD-dependent oxidoreductase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.92 | PFLU_RS00240 | | oligopeptidase A | 0.87 | PFLU_RS03905 | | NAD(P)/FAD-dependent oxidoreductase | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.92 | GEMAOFIL_00254 | | Oligopeptidase A | 0.86 | GEMAOFIL_00976 | | NADH dehydrogenase | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.92 | QF045_RS03190 | | oligopeptidase A | 0.83 | QF045_RS06840 | | NAD(P)/FAD-dependent oxidoreductase | low | > 93 |
| Pseudomonas simiae WCS417 | 0.91 | PS417_00245 | | oligopeptidase A | 0.87 | PS417_03855 | | NADH dehydrogenase | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.91 | AO356_11120 | | oligopeptidase A | 0.86 | AO356_15965 | | NADH dehydrogenase | low | > 104 |
| Pseudomonas sp. DMC3 | 0.91 | GFF663 | | Oligopeptidase A | 0.86 | GFF4008 | | NADH dehydrogenase | low | > 89 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_4091 | | Oligopeptidase A (EC 3.4.24.70) | 0.85 | Pf6N2E2_5132 | | NADH dehydrogenase (EC 1.6.99.3) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_624 | | Oligopeptidase A (EC 3.4.24.70) | 0.86 | PfGW456L13_1496 | | NADH dehydrogenase (EC 1.6.99.3) | low | > 87 |
| Pseudomonas sp. RS175 | 0.91 | PFR28_04699 | | Oligopeptidase A | 0.85 | PFR28_03740 | | NADH dehydrogenase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_10775 | | oligopeptidase A | 0.86 | AO353_14255 | | NADH dehydrogenase | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.91 | COO64_RS02335 | prlC | oligopeptidase A | 0.83 | COO64_RS11095 | | NAD(P)/FAD-dependent oxidoreductase | low | > 93 |
| Pseudomonas fluorescens FW300-N1B4 | 0.90 | Pf1N1B4_1844 | | Oligopeptidase A (EC 3.4.24.70) | 0.87 | Pf1N1B4_2826 | | NADH dehydrogenase (EC 1.6.99.3) | low | > 87 |
| Pseudomonas sp. BP01 | 0.89 | JOY50_RS21245 | prlC | oligopeptidase A | 0.81 | JOY50_RS27170 | | NAD(P)/FAD-dependent oxidoreductase | low | > 84 |
| Pseudomonas putida KT2440 | 0.88 | PP_0096 | | oligopeptidase A | 0.81 | PP_0626 | | NADH dehydrogenase | low | > 96 |
| Pseudomonas aeruginosa MRSN321 | 0.86 | DY961_RS26600 | prlC;go_function=metalloendopeptidase | oligopeptidase A | 0.76 | DY961_RS23775 | | NAD(P)/FAD-dependent oxidoreductase | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.86 | DQ20_RS31170 | prlC;go_function=metalloendopeptidase | oligopeptidase A | 0.76 | DQ20_RS56240 | | NAD(P)/FAD-dependent oxidoreductase | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.86 | IKLFDK_25215 | | oligopeptidase A | 0.76 | IKLFDK_01385 | | FAD-dependent oxidoreductase | low | > 98 |
| Pseudomonas sp. S08-1 | 0.82 | OH686_12360 | | Oligopeptidase A | 0.78 | OH686_16450 | | NADH dehydrogenase | low | > 80 |
| Pseudomonas segetis P6 | 0.82 | ACVTMO_RS01765 | prlC | oligopeptidase A | 0.79 | ACVTMO_RS19395 | | NAD(P)/FAD-dependent oxidoreductase | low | > 75 |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_4320 | | Zn-dependent oligopeptidases | 0.78 | Psest_0715 | | NADH dehydrogenase, FAD-containing subunit | low | > 67 |
| Shewanella oneidensis MR-1 | 0.59 | SO4699 | prlC | oligopeptidase A (NCBI ptt file) | 0.38 | SO3517 | ndh | NADH dehydrogenase (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_4051 | | oligopeptidase A (RefSeq) | 0.38 | Shewana3_3123 | | FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_03633 | | Oligopeptidase A | 0.46 | MIT1002_03885 | | NADH dehydrogenase | low | > 70 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF517 | | Oligopeptidase A (EC 3.4.24.70) | 0.52 | GFF3392 | | NADH dehydrogenase (EC 1.6.99.3) | low | > 78 |
| Escherichia coli ECOR38 | 0.59 | HEPCGN_15325 | prlC | oligopeptidase A | 0.52 | HEPCGN_23990 | ndh | NADH-quinone dehydrogenase | low | > 88 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS00045 | | oligopeptidase A | 0.52 | HGI48_RS13105 | | NAD(P)/FAD-dependent oxidoreductase | low | > 71 |
| Escherichia coli BL21 | 0.59 | ECD_03347 | | oligopeptidase A | 0.52 | ECD_01105 | | respiratory NADH dehydrogenase 2/cupric reductase | low | > 61 |
| Klebsiella michiganensis M5al | 0.59 | BWI76_RS26610 | | oligopeptidase A | 0.52 | BWI76_RS11175 | | NADH dehydrogenase | — | — |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_08350 | prlC | oligopeptidase A | 0.52 | NOLOHH_21020 | ndh | NADH-quinone dehydrogenase | low | > 76 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_03210 | prlC | oligopeptidase A | 0.52 | BNILDI_19185 | ndh | NADH-quinone dehydrogenase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_00205 | | Oligopeptidase A | 0.52 | OHPLBJKB_02557 | | NADH dehydrogenase | low | > 74 |
| Escherichia coli BW25113 | 0.59 | b3498 | prlC | oligopeptidase A (NCBI) | 0.52 | b1109 | ndh | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.59 | EFB2_00317 | | Oligopeptidase A | 0.52 | EFB2_02866 | | NADH dehydrogenase | low | > 86 |
| Escherichia coli ECRC102 | 0.59 | NIAGMN_14180 | prlC | oligopeptidase A | 0.52 | NIAGMN_24335 | ndh | NADH-quinone dehydrogenase | low | > 80 |
| Escherichia coli ECRC98 | 0.59 | JDDGAC_20045 | prlC | oligopeptidase A | 0.52 | JDDGAC_07155 | ndh | NADH-quinone dehydrogenase | low | > 87 |
| Escherichia coli ECRC101 | 0.59 | MCAODC_06930 | prlC | oligopeptidase A | 0.52 | MCAODC_22855 | ndh | NADH-quinone dehydrogenase | low | > 87 |
| Escherichia coli ECRC99 | 0.59 | KEDOAH_11730 | prlC | oligopeptidase A | 0.52 | KEDOAH_24260 | ndh | NADH-quinone dehydrogenase | — | — |
| Escherichia coli Nissle 1917 | 0.59 | ECOLIN_RS19985 | | oligopeptidase A | 0.52 | ECOLIN_RS06400 | | NADH-quinone dehydrogenase | low | > 55 |
| Escherichia coli ECRC100 | 0.59 | OKFHMN_16415 | prlC | oligopeptidase A | 0.52 | OKFHMN_03495 | ndh | NADH-quinone dehydrogenase | low | > 79 |
| Enterobacter asburiae PDN3 | 0.58 | EX28DRAFT_4063 | | Zn-dependent oligopeptidases | 0.53 | EX28DRAFT_1821 | | NADH dehydrogenase, FAD-containing subunit | 0.71 | 53 |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS21265 | | oligopeptidase A | 0.53 | DDA3937_RS13040 | | NAD(P)/FAD-dependent oxidoreductase | low | > 74 |
| Enterobacter sp. TBS_079 | 0.58 | MPMX20_04397 | | Oligopeptidase A | 0.53 | MPMX20_01790 | | NADH dehydrogenase | low | > 85 |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS00035 | | oligopeptidase A | 0.53 | DZA65_RS13575 | | NAD(P)/FAD-dependent oxidoreductase | low | > 75 |
| Shewanella loihica PV-4 | 0.58 | Shew_3657 | | oligopeptidase A (RefSeq) | 0.47 | Shew_2195 | | NADH dehydrogenase (RefSeq) | low | > 60 |
| Klebsiella pneumoniae MKP103 | 0.58 | KDGMDA_07425 | | oligopeptidase A | 0.52 | KDGMDA_18770 | | Type II NADH:quinone oxidoreductase | low | > 95 |
| Shewanella amazonensis SB2B | 0.58 | Sama_3546 | | oligopeptidase A (RefSeq) | 0.36 | Sama_0936 | | NADH dehydrogenase (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.58 | CSW01_01010 | | oligopeptidase A | 0.53 | CSW01_09465 | | NAD(P)/FAD-dependent oxidoreductase | 0.53 | 53 |
| Erwinia amylovora T8 | 0.58 | OLJFJH_04530 | | Oligopeptidase A | 0.52 | OLJFJH_15455 | | FAD-dependent oxidoreductase | — | — |
| Serratia liquefaciens MT49 | 0.57 | IAI46_24210 | | oligopeptidase A | 0.54 | IAI46_09910 | | NAD(P)/FAD-dependent oxidoreductase | low | > 87 |
| Pantoea agglomerans CFBP13505 P0401 | 0.57 | PagCFBP13505_RS17845 | | oligopeptidase A | 0.52 | PagCFBP13505_RS05350 | | NAD(P)/FAD-dependent oxidoreductase | low | > 74 |
| Pantoea sp. MT58 | 0.57 | IAI47_01345 | | oligopeptidase A | 0.52 | IAI47_11985 | | NAD(P)/FAD-dependent oxidoreductase | low | > 76 |
| Marinobacter adhaerens HP15 | 0.57 | HP15_3759 | | oligopeptidase A-like protein | 0.54 | HP15_3830 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.57 | HER17_RS21300 | | oligopeptidase A | 0.54 | HER17_RS08735 | | NAD(P)/FAD-dependent oxidoreductase | 0.89 | 46 |
| Erwinia tracheiphila HP pepo 2.2 | 0.57 | IJEDHG_12590 | prlC | oligopeptidase A | 0.53 | IJEDHG_00570 | | NADH dehydrogenase | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.57 | LU632_RS19470 | prlC | oligopeptidase A | 0.53 | LU632_RS14740 | | NAD(P)/FAD-dependent oxidoreductase | low | > 73 |
| Rahnella sp. WP5 | 0.56 | EX31_RS05165 | | oligopeptidase A | 0.53 | EX31_RS24510 | | NAD(P)/FAD-dependent oxidoreductase | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.50 | HSERO_RS07290 | | oligopeptidase A | 0.16 | HSERO_RS08760 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | low | > 78 |
| Methylophilus sp. DMC18 | 0.50 | GFF2262 | | Oligopeptidase A | 0.54 | GFF2428 | | NADH dehydrogenase | — | — |
| Acinetobacter baumannii LAC-4 | 0.49 | RR41_RS02340 | | M3 family metallopeptidase | 0.41 | RR41_RS05095 | | NAD(P)/FAD-dependent oxidoreductase | low | > 55 |
| Dyella japonica UNC79MFTsu3.2 | 0.49 | ABZR86_RS14940 | | M3 family metallopeptidase | 0.13 | ABZR86_RS12540 | | NAD(P)/FAD-dependent oxidoreductase | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_02685 | | Oligopeptidase A | 0.41 | MPMX26_01006 | | NADH dehydrogenase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.48 | Xcc-8004.4539.1 | | Oligopeptidase A (EC 3.4.24.70) | 0.18 | Xcc-8004.4769.1 | | NADH dehydrogenase (EC 1.6.99.3) | low | > 74 |
| Paraburkholderia sabiae LMG 24235 | 0.48 | QEN71_RS05695 | | M3 family metallopeptidase | 0.50 | QEN71_RS17890 | | NAD(P)/FAD-dependent oxidoreductase | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS07340 | | oligopeptidase A | 0.52 | RR42_RS26100 | | pyridine nucleotide-disulfide oxidoreductase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.47 | LRK54_RS08615 | | M3 family metallopeptidase | 0.40 | LRK54_RS07490 | | NAD(P)/FAD-dependent oxidoreductase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS08380 | | M3 family metallopeptidase | 0.40 | LRK55_RS07230 | | NAD(P)/FAD-dependent oxidoreductase | low | > 63 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS12875 | | oligopeptidase A | 0.51 | BPHYT_RS33605 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | low | > 109 |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS15000 | | oligopeptidase A | 0.48 | UW163_RS09925 | | NAD(P)/FAD-dependent oxidoreductase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS01690 | | oligopeptidase A | 0.48 | RALBFv3_RS03745 | | NAD(P)/FAD-dependent oxidoreductase | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS13490 | | M3 family metallopeptidase | 0.50 | ABZR87_RS15675 | | NAD(P)/FAD-dependent oxidoreductase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_002798 | | oligopeptidase A | 0.51 | ABIE53_004853 | | NADH dehydrogenase | low | > 113 |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS08035 | | oligopeptidase A | 0.49 | RS_RS11190 | | NAD(P)/FAD-dependent oxidoreductase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.46 | RPSI07_RS15795 | | oligopeptidase A | 0.48 | RPSI07_RS13485 | | NAD(P)/FAD-dependent oxidoreductase | low | > 81 |
| Variovorax sp. OAS795 | 0.46 | ABID97_RS14080 | | M3 family metallopeptidase | 0.51 | ABID97_RS26565 | | NAD(P)/FAD-dependent oxidoreductase | — | — |
| Variovorax sp. SCN45 | 0.45 | GFF963 | | Oligopeptidase A (EC 3.4.24.70) | 0.16 | GFF6814 | | NADH dehydrogenase (EC 1.6.99.3) | low | > 127 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_00461 | | oligopeptidase A Metallo peptidase. MEROPS family M03A | 0.51 | H281DRAFT_06021 | | NADH dehydrogenase | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_4097 | | Oligopeptidase A (EC 3.4.24.70) | 0.16 | Ac3H11_2167 | | NADH dehydrogenase (EC 1.6.99.3) | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.44 | GFF4214 | | Oligopeptidase A (EC 3.4.24.70) | 0.37 | GFF4021 | | NADH dehydrogenase (EC 1.6.99.3) | low | > 90 |
| Synechocystis sp000284455 PCC 6803 | 0.41 | SGL_RS17300 | | M3 family metallopeptidase | 0.15 | SGL_RS08135 | | NAD(P)/FAD-dependent oxidoreductase | low | > 52 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.34 | Echvi_2572 | | Zn-dependent oligopeptidases | 0.16 | Echvi_3156 | | NADH dehydrogenase, FAD-containing subunit | low | > 79 |
| Cellulophaga baltica 18 | 0.33 | M666_RS01280 | | M3 family metallopeptidase | 0.16 | M666_RS07185 | | NAD(P)/FAD-dependent oxidoreductase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.31 | ABI39_RS13165 | | M3 family metallopeptidase | 0.15 | ABI39_RS15145 | | NAD(P)/FAD-dependent oxidoreductase | low | > 72 |
| Bacteroides ovatus ATCC 8483 | 0.30 | BACOVA_05095 | | peptidase family M3 | 0.13 | BACOVA_04275 | | pyridine nucleotide-disulfide oxidoreductase | low | > 96 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.30 | BT2834 | | peptidyl-dipeptidase (NCBI ptt file) | 0.10 | BT1537 | | putative NADH dehydrogenase (NCBI ptt file) | low | > 81 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc04403 | | peptidyl-dipeptidase A protein | 0.16 | SMc04452 | | NADH dehydrogenase transmembrane protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.28 | ABIE40_RS18135 | | M3 family metallopeptidase | 0.16 | ABIE40_RS11380 | | NAD(P)/FAD-dependent oxidoreductase | low | > 107 |
| Agrobacterium fabrum C58 | 0.28 | Atu2664 | | peptidyl-dipeptidase | 0.16 | Atu2023 | | NADH dehydrogenase | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.27 | TX73_004495 | | M3 family metallopeptidase | 0.52 | TX73_005675 | | NAD(P)/FAD-dependent oxidoreductase | low | > 86 |
| Azospirillum brasilense Sp245 | 0.26 | AZOBR_RS23485 | | peptidase M3 | 0.19 | AZOBR_RS00545 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | low | > 97 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.26 | ABZR88_RS16390 | | peptidyl-dipeptidase Dcp | 0.17 | ABZR88_RS14020 | | NAD(P)/FAD-dependent oxidoreductase | low | > 71 |
| Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_2479 | | Zn-dependent oligopeptidases | 0.48 | Ga0059261_1466 | | NADH dehydrogenase, FAD-containing subunit | low | > 68 |
| Lysobacter sp. OAE881 | 0.21 | ABIE51_RS09155 | | M3 family metallopeptidase | 0.18 | ABIE51_RS02115 | | NAD(P)/FAD-dependent oxidoreductase | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.20 | CA264_01885 | | peptidase M3 | 0.13 | CA264_14170 | | FAD-dependent oxidoreductase | low | > 74 |
Not shown: 14 genomes with orthologs for Psyr_0045 only; 7 genomes with orthologs for Psyr_0790 only