| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0363 | | 8-amino-7-oxononanoate synthase | 1.0 | PP_5303 | | aminoacrylate/iminopropionate hydrolase/deaminase | 0.55 | 9 |
| Pseudomonas syringae pv. syringae B728a | 0.84 | Psyr_4686 | | 8-amino-7-oxononanoate synthase | 0.89 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.84 | Psyr_4686 | | 8-amino-7-oxononanoate synthase | 0.89 | Psyr_0208 | | endoribonuclease L-PSP | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.84 | PfGW456L13_1148 | | 8-amino-7-oxononanoate synthase (EC 2.3.1.47) | 0.97 | PfGW456L13_779 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.78 | 15 |
| Pseudomonas sp. RS175 | 0.84 | PFR28_04102 | | 8-amino-7-oxononanoate synthase | 0.98 | PFR28_04425 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.49 | 6 |
| Pseudomonas fluorescens FW300-N2E3 | 0.83 | AO353_07520 | | 8-amino-7-oxononanoate synthase | 0.97 | AO353_09285 | | reactive intermediate/imine deaminase | 0.58 | 48 |
| Pseudomonas fluorescens FW300-N2E2 | 0.83 | Pf6N2E2_4761 | | 8-amino-7-oxononanoate synthase (EC 2.3.1.47) | 0.97 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.83 | Pf1N1B4_2488 | | 8-amino-7-oxononanoate synthase (EC 2.3.1.47) | 0.98 | Pf1N1B4_2112 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.61 | 13 |
| Pseudomonas fluorescens SBW25-INTG | 0.82 | PFLU_RS27645 | | 8-amino-7-oxononanoate synthase | 0.97 | PFLU_RS29515 | | RidA family protein | 0.51 | 9 |
| Pseudomonas fluorescens SBW25 | 0.82 | PFLU_RS27645 | | 8-amino-7-oxononanoate synthase | 0.97 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Pseudomonas simiae WCS417 | 0.82 | PS417_26000 | | 8-amino-7-oxononanoate synthase | 0.97 | PS417_27835 | | endoribonuclease | 0.25 | 46 |
| Pseudomonas stutzeri RCH2 | 0.82 | Psest_0412 | | 8-amino-7-oxononanoate synthase | 0.90 | Psest_3818 | | endoribonuclease L-PSP, putative | 0.51 | 12 |
| Pseudomonas fluorescens FW300-N2C3 | 0.81 | AO356_14140 | | 8-amino-7-oxononanoate synthase | 0.97 | AO356_12475 | | reactive intermediate/imine deaminase | low | > 104 |
| Pseudomonas sp. S08-1 | 0.81 | OH686_10350 | | 8-amino-7-oxononanoate synthase | 0.93 | OH686_13545 | | RidA/YER057c/UK114 superfamily protein | low | > 80 |
| Marinobacter adhaerens HP15 | 0.56 | HP15_2485 | | 8-amino-7-oxononanoate synthase | 0.71 | HP15_306 | | YjgF-like protein | low | > 73 |
| Dechlorosoma suillum PS | 0.49 | Dsui_2881 | | 8-amino-7-oxononanoate synthase | 0.78 | Dsui_0312 | | endoribonuclease L-PSP, putative | — | — |
| Kangiella aquimarina DSM 16071 | 0.48 | B158DRAFT_0865 | | 8-amino-7-oxononanoate synthase | 0.77 | B158DRAFT_0573 | | endoribonuclease L-PSP, putative | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.46 | ABZR86_RS15835 | | 8-amino-7-oxononanoate synthase | 0.66 | ABZR86_RS11845 | | RidA family protein | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS09895 | | 8-amino-7-oxononanoate synthase | 0.64 | LRK55_RS11525 | | RidA family protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS10255 | | 8-amino-7-oxononanoate synthase | 0.64 | LRK54_RS11800 | | RidA family protein | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_13655 | bioF | 8-amino-7-oxononanoate synthase | 0.64 | OKGIIK_12095 | ridA | reactive intermediate/imine deaminase | low | > 52 |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS01145 | | 8-amino-7-oxononanoate synthase | 0.64 | ABIE51_RS17260 | | RidA family protein | low | > 62 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_01404 | | 8-amino-7-oxononanoate synthase | 0.40 | MPMX20_00542 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.41 | Xcc-8004.504.1 | | 8-amino-7-oxononanoate synthase (EC 2.3.1.47) | 0.61 | Xcc-8004.1205.1 | | hypothetical protein | low | > 74 |
| Enterobacter asburiae PDN3 | 0.40 | EX28DRAFT_2215 | | 8-amino-7-oxononanoate synthase | 0.39 | EX28DRAFT_3444 | | reactive intermediate/imine deaminase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS08680 | | 8-amino-7-oxononanoate synthase | 0.41 | HGI48_RS01890 | | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS08970 | | 8-amino-7-oxononanoate synthase | 0.41 | DZA65_RS01960 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS08515 | | 8-amino-7-oxononanoate synthase | 0.42 | DDA3937_RS01915 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF672 | | 8-amino-7-oxononanoate synthase (EC 2.3.1.47) | 0.43 | GFF928 | | Endoribonuclease L-PSP | low | > 78 |
| Vibrio cholerae E7946 ATCC 55056 | 0.38 | CSW01_05650 | | 8-amino-7-oxononanoate synthase | 0.43 | CSW01_12735 | | RidA family protein | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.38 | HER17_RS13455 | | 8-amino-7-oxononanoate synthase | 0.43 | HER17_RS19520 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.38 | LU632_RS09135 | bioF | 8-amino-7-oxononanoate synthase | 0.40 | LU632_RS20960 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Paraburkholderia graminis OAS925 | 0.37 | ABIE53_000579 | | 8-amino-7-oxononanoate synthase | 0.27 | ABIE53_004706 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.37 | H281DRAFT_02095 | | 8-amino-7-oxononanoate synthase | 0.36 | H281DRAFT_01079 | | Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family | low | > 103 |
| Escherichia fergusonii Becca | 0.37 | EFB2_03329 | | 8-amino-7-oxononanoate synthase | 0.42 | EFB2_00701 | | Putative reactive intermediate deaminase TdcF | low | > 86 |
| Rahnella sp. WP5 | 0.37 | EX31_RS23700 | | 8-amino-7-oxononanoate synthase | 0.43 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 89 |
| Escherichia coli Nissle 1917 | 0.37 | ECOLIN_RS04135 | | 8-amino-7-oxononanoate synthase | 0.42 | ECOLIN_RS17920 | | enamine/imine deaminase | — | — |
| Escherichia coli ECRC101 | 0.37 | OKFHMN_06395 | bioF | 8-amino-7-oxononanoate synthase | 0.42 | OKFHMN_18420 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECRC62 | 0.37 | BNILDI_21035 | bioF | 8-amino-7-oxononanoate synthase | 0.42 | BNILDI_01325 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECRC102 | 0.37 | NIAGMN_04440 | bioF | 8-amino-7-oxononanoate synthase | 0.42 | NIAGMN_16185 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECRC101 | 0.37 | MCAODC_25610 | bioF | 8-amino-7-oxononanoate synthase | 0.42 | MCAODC_08935 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECRC98 | 0.37 | JDDGAC_10030 | bioF | 8-amino-7-oxononanoate synthase | 0.42 | JDDGAC_22055 | tdcF | enamine/imine deaminase | — | — |
| Escherichia coli ECRC99 | 0.37 | KEDOAH_21515 | bioF | 8-amino-7-oxononanoate synthase | 0.42 | KEDOAH_09725 | tdcF | enamine/imine deaminase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS01095 | | 8-amino-7-oxononanoate synthase | 0.48 | QEN71_RS41190 | | RidA family protein | — | — |
| Escherichia coli BW25113 | 0.36 | b0776 | bioF | 8-amino-7-oxononanoate synthase (NCBI) | 0.42 | b3113 | yhaR | orf, hypothetical protein (VIMSS) | low | > 76 |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS02160 | | 8-amino-7-oxononanoate synthase | 0.29 | BPHYT_RS29300 | | endoribonuclease L-PSP | low | > 109 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.36 | OHPLBJKB_02937 | | 8-amino-7-oxononanoate synthase | 0.42 | OHPLBJKB_00587 | | Putative reactive intermediate deaminase TdcF | low | > 73 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF3995 | | 8-amino-7-oxononanoate synthase (EC 2.3.1.47) | 0.27 | GFF3622 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 90 |
| Escherichia coli BL21 | 0.36 | ECD_00743 | | 8-amino-7-oxononanoate synthase | 0.42 | ECD_02980 | | putative reactive intermediate deaminase | low | > 60 |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_22765 | bioF | 8-amino-7-oxononanoate synthase | 0.42 | NOLOHH_10200 | tdcF | enamine/imine deaminase | low | > 57 |
| Escherichia coli ECOR38 | 0.36 | HEPCGN_01645 | bioF | 8-amino-7-oxononanoate synthase | 0.42 | HEPCGN_17255 | tdcF | enamine/imine deaminase | low | > 85 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_06530 | | 8-amino-7-oxononanoate synthase | 0.39 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.36 | MIT1002_01380 | | 8-amino-7-oxononanoate synthase | 0.71 | MIT1002_00109 | | Putative reactive intermediate deaminase TdcF | 0.77 | 36 |
| Ralstonia solanacearum IBSBF1503 | 0.35 | RALBFv3_RS00820 | | 8-amino-7-oxononanoate synthase | 0.37 | RALBFv3_RS20925 | | endoribonuclease L-PSP | low | > 76 |
| Ralstonia solanacearum UW163 | 0.35 | UW163_RS14155 | | 8-amino-7-oxononanoate synthase | 0.37 | UW163_RS22060 | | endoribonuclease L-PSP | — | — |
| Shewanella oneidensis MR-1 | 0.35 | SO2739 | bioF | 8-amino-7-oxononanoate synthase (NCBI ptt file) | 0.73 | SO0358 | | endoribonuclease L-PSP, putative (NCBI ptt file) | low | > 76 |
| Cupriavidus basilensis FW507-4G11 | 0.35 | RR42_RS00930 | | 8-amino-7-oxononanoate synthase | 0.33 | RR42_RS16710 | | endoribonuclease L-PSP | low | > 128 |
| Klebsiella michiganensis M5al | 0.35 | BWI76_RS08765 | | 8-amino-7-oxononanoate synthase | 0.42 | BWI76_RS02985 | | reactive intermediate/imine deaminase | low | > 92 |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS12340 | | 8-amino-7-oxononanoate synthase | 0.29 | ABZR87_RS05790 | | RidA family protein | low | > 80 |
| Shewanella loihica PV-4 | 0.35 | Shew_1720 | | 8-amino-7-oxononanoate synthase (RefSeq) | 0.73 | Shew_3500 | | putative endoribonuclease L-PSP (RefSeq) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.34 | CA264_07040 | | 8-amino-7-oxononanoate synthase | 0.43 | CA264_17590 | | RidA family protein | low | > 74 |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_2518 | | aminotransferase, class I and II (RefSeq) | 0.73 | Shewana3_3813 | | putative endoribonuclease L-PSP (RefSeq) | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.34 | ABZR88_RS03035 | | pyridoxal phosphate-dependent aminotransferase family protein | 0.41 | ABZR88_RS17245 | | RidA family protein | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.34 | CA265_RS13580 | | 8-amino-7-oxononanoate synthase | 0.45 | CA265_RS22825 | | reactive intermediate/imine deaminase | low | > 88 |
| Pantoea sp. MT58 | 0.33 | IAI47_13525 | | 8-amino-7-oxononanoate synthase | 0.41 | IAI47_16870 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 76 |
| Phocaeicola dorei CL03T12C01 | 0.33 | ABI39_RS16535 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | 0.50 | ABI39_RS14715 | | RidA family protein | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.33 | HMPREF1058_RS01195 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | 0.49 | HMPREF1058_RS18400 | | RidA family protein | — | — |
| Variovorax sp. SCN45 | 0.32 | GFF144 | | 8-amino-7-oxononanoate synthase (EC 2.3.1.47) | 0.32 | GFF3442 | | RidA/YER057c/UK114 superfamily protein | low | > 127 |
| Shewanella amazonensis SB2B | 0.32 | Sama_0098 | | 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) | 0.79 | Sama_0263 | | YjgF-like protein (RefSeq) | low | > 62 |
| Parabacteroides merdae CL09T00C40 | 0.32 | HMPREF1078_RS16170 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | 0.46 | HMPREF1078_RS02020 | | RidA family protein | — | — |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS15295 | | 8-amino-7-oxononanoate synthase | 0.55 | ABCV34_RS03565 | | Rid family detoxifying hydrolase | — | — |
| Bacteroides stercoris CC31F | 0.30 | HMPREF1181_RS14215 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | 0.47 | HMPREF1181_RS10885 | | RidA family protein | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.30 | Echvi_0145 | | 2-amino-3-ketobutyrate coenzyme A ligase | 0.45 | Echvi_1327 | | endoribonuclease L-PSP, putative | low | > 79 |
| Synechococcus elongatus PCC 7942 | 0.30 | Synpcc7942_0027 | bioF | 8-amino-7-oxononanoate synthase | 0.45 | Synpcc7942_0972 | | YjgF-like protein | — | — |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS31105 | | 8-amino-7-oxononanoate synthase | 0.44 | AZOBR_RS32435 | | dfrA | low | > 97 |
| Bacteroides ovatus ATCC 8483 | 0.29 | BACOVA_02588 | | putative 8-amino-7-oxononanoate synthase | 0.46 | BACOVA_00589 | | putative endoribonuclease L-PSP | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.29 | BT1371 | | 2-amino-3-ketobutyrate coenzyme A ligase (NCBI ptt file) | 0.46 | BT1336 | | putative translation initiation inhibitor (NCBI ptt file) | low | > 81 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_01647 | | 8-amino-7-oxononanoate synthase | 0.30 | CCNA_02886 | | RutC-family pyrimidine utilization protein C | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_01647 | | 8-amino-7-oxononanoate synthase | 0.30 | CCNA_02886 | | RutC-family pyrimidine utilization protein C | low | > 67 |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_3546 | | 5-aminolevulinic acid synthase (RefSeq) | 0.30 | Dshi_0720 | | Endoribonuclease L-PSP (RefSeq) | low | > 64 |
| Bosea sp. OAE506 | 0.27 | ABIE41_RS04425 | | 5-aminolevulinate synthase | 0.22 | ABIE41_RS11850 | | RidA family protein | low | > 77 |
| Azospirillum sp. SherDot2 | 0.27 | MPMX19_02203 | | 5-aminolevulinate synthase | 0.31 | MPMX19_04018 | | 2-aminomuconate deaminase | — | — |
| Acinetobacter radioresistens SK82 | 0.26 | MPMX26_02453 | | 8-amino-7-oxononanoate synthase 2 | 0.71 | MPMX26_02797 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 36 |
| Fusobacterium nucleatum SB010 | 0.23 | HUW76_05725 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | 0.45 | HUW76_10065 | | RidA family protein | low | > 35 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.20 | DVU2564 | bioF | 8-amino-7-oxononanoate synthase (Dmitry Rodionov) | 0.48 | DVU2647 | | endoribonuclease, L-PSP family (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.18 | DvMF_1008 | | aminotransferase class I and II (RefSeq) | 0.34 | DvMF_1512 | | endoribonuclease L-PSP (RefSeq) | — | — |
Not shown: 16 genomes with orthologs for PP_0363 only; 1 genomes with orthologs for PP_5303 only