Conservation of cofitness between PP_1426 and PP_5104 in Pseudomonas putida KT2440

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1426 L-aspartate oxidase 1.0 PP_5104 thiazole synthase 0.55 6
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS07225 L-aspartate oxidase 0.89 PFLU_RS28420 thiazole synthase 0.28 79
Pseudomonas fluorescens SBW25 0.90 PFLU_RS07225 L-aspartate oxidase 0.89 PFLU_RS28420 thiazole synthase low > 109
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_17620 L-aspartate oxidase 0.91 AO353_08215 thiazole synthase low > 101
Pseudomonas simiae WCS417 0.90 PS417_07115 L-aspartate oxidase 0.89 PS417_26775 thiazole synthase low > 88
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4517 L-aspartate oxidase (EC 1.4.3.16) 0.89 PfGW456L13_1000 Thiazole biosynthesis protein ThiG low > 87
Pseudomonas sp. RS175 0.89 PFR28_00689 L-aspartate oxidase 0.91 PFR28_04252 Thiazole synthase 0.40 20
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3322 L-aspartate oxidase (EC 1.4.3.16) 0.89 Pf1N1B4_2331 Thiazole biosynthesis protein ThiG low > 87
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_3959 L-aspartate oxidase 0.90 Psyr_4740 thiazole-phosphate synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_3959 L-aspartate oxidase 0.90 Psyr_4740 thiazole-phosphate synthase low > 86
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_04580 L-aspartate oxidase 0.91 AO356_13375 thiazole synthase low > 104
Pseudomonas sp. S08-1 0.87 OH686_20040 L-aspartate oxidase 0.87 OH686_14285 Thiazole synthase 0.73 64
Pseudomonas stutzeri RCH2 0.86 Psest_3101 L-aspartate oxidase 0.85 Psest_0267 Uncharacterized enzyme of thiazole biosynthesis 0.27 10
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2758 L-aspartate oxidase (EC 1.4.3.16) 0.91 Pf6N2E2_4590 Thiazole biosynthesis protein ThiG low > 103
Marinobacter adhaerens HP15 0.72 HP15_774 L-aspartate oxidase 0.68 HP15_3274 thiazole synthase — —
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_2179 L-aspartate oxidase (EC 1.4.3.16) 0.36 B158DRAFT_0291 thiazole-phosphate synthase low > 40
Shewanella amazonensis SB2B 0.67 Sama_0873 L-aspartate oxidase (RefSeq) 0.35 Sama_1856 thiG thiazole synthase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12495 L-aspartate oxidase 0.37 CSW01_00355 thiazole synthase low > 62
Shewanella oneidensis MR-1 0.66 SO1341 nadB L-aspartate oxidase (NCBI ptt file) 0.35 SO2441 thiG thiG protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.66 Shew_1047 L-aspartate oxidase (RefSeq) 0.35 Shew_2092 thiazole biosynthesis family protein (RefSeq) — —
Serratia liquefaciens MT49 0.66 IAI46_19590 L-aspartate oxidase 0.34 IAI46_01300 thiazole synthase low > 86
Shewanella sp. ANA-3 0.66 Shewana3_3033 L-aspartate oxidase (RefSeq) 0.36 Shewana3_1940 thiG thiazole synthase (RefSeq) — —
Dickeya dianthicola 67-19 0.66 HGI48_RS15855 L-aspartate oxidase 0.35 HGI48_RS01150 thiazole synthase low > 71
Dickeya dadantii 3937 0.66 DDA3937_RS15770 L-aspartate oxidase 0.35 DDA3937_RS01155 thiazole synthase low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS16935 L-aspartate oxidase 0.36 DZA65_RS01195 thiazole synthase 0.80 23
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS03070 L-aspartate oxidase 0.35 QEN71_RS27930 thiazole synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_04069 L-aspartate oxidase 0.35 H281DRAFT_05639 thiazole-phosphate synthase — —
Paraburkholderia graminis OAS925 0.65 ABIE53_003292 L-aspartate oxidase 0.35 ABIE53_003714 thiazole synthase — —
Pectobacterium carotovorum WPP14 0.65 HER17_RS05775 L-aspartate oxidase 0.37 HER17_RS20400 thiazole synthase low > 75
Pantoea sp. MT58 0.64 IAI47_04845 L-aspartate oxidase 0.31 IAI47_20700 thiazole synthase low > 76
Klebsiella michiganensis M5al 0.64 BWI76_RS21360 L-aspartate oxidase 0.35 BWI76_RS01535 thiazole synthase 0.53 11
Enterobacter asburiae PDN3 0.64 EX28DRAFT_0071 L-aspartate oxidase (EC 1.4.3.16) 0.35 EX28DRAFT_4532 Uncharacterized enzyme of thiazole biosynthesis low > 76
Ralstonia solanacearum PSI07 0.64 RPSI07_RS12660 L-aspartate oxidase 0.35 RPSI07_RS23435 thiazole synthase — —
Enterobacter sp. TBS_079 0.64 MPMX20_03445 L-aspartate oxidase 0.34 MPMX20_00213 Thiazole synthase low > 85
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS15640 L-aspartate oxidase 0.35 BPHYT_RS17775 thiazole synthase — —
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS17010 L-aspartate oxidase 0.34 RR42_RS01305 thiazole synthase — —
Dechlorosoma suillum PS 0.64 Dsui_2452 L-aspartate oxidase 0.66 Dsui_1014 putative enzyme of thiazole biosynthesis — —
Ralstonia solanacearum UW163 0.64 UW163_RS08945 L-aspartate oxidase 0.35 UW163_RS03655 thiazole synthase — —
Rahnella sp. WP5 0.64 EX31_RS21795 L-aspartate oxidase 0.36 EX31_RS16795 thiazole synthase low > 89
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS04725 L-aspartate oxidase 0.35 RALBFv3_RS09925 thiazole synthase — —
Ralstonia solanacearum GMI1000 0.64 RS_RS12285 L-aspartate oxidase 0.35 RS_RS00535 thiazole synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF2106 L-aspartate oxidase (EC 1.4.3.16) 0.35 GFF4202 Thiazole biosynthesis protein ThiG low > 78
Acinetobacter radioresistens SK82 0.64 MPMX26_02162 L-aspartate oxidase 0.65 MPMX26_01107 Thiazole synthase low > 36
Escherichia coli ECRC101 0.64 MCAODC_11900 nadB L-aspartate oxidase 0.35 MCAODC_03895 thiG thiazole synthase — —
Escherichia coli ECRC98 0.64 JDDGAC_25035 nadB L-aspartate oxidase 0.35 JDDGAC_17020 thiG thiazole synthase — —
Escherichia coli ECRC102 0.64 NIAGMN_19140 nadB L-aspartate oxidase 0.35 NIAGMN_11145 thiG thiazole synthase — —
Escherichia coli ECRC62 0.64 BNILDI_11845 nadB L-aspartate oxidase 0.35 BNILDI_05985 thiG thiazole synthase — —
Escherichia coli ECOR27 0.64 NOLOHH_13045 nadB L-aspartate oxidase 0.35 NOLOHH_05540 thiG thiazole synthase low > 57
Escherichia coli ECRC99 0.64 KEDOAH_06850 nadB L-aspartate oxidase 0.35 KEDOAH_14765 thiG thiazole synthase — —
Escherichia coli ECRC101 0.64 OKFHMN_21370 nadB L-aspartate oxidase 0.35 OKFHMN_13395 thiG thiazole synthase — —
Escherichia coli ECOR38 0.64 HEPCGN_20515 nadB L-aspartate oxidase 0.35 HEPCGN_12030 thiG thiazole synthase low > 85
Escherichia coli BW25113 0.64 b2574 nadB L-aspartate oxidase (NCBI) 0.35 b3991 thiG thiamin biosynthesis, thiazole moiety (VIMSS) 0.55 71
Escherichia coli BL21 0.64 ECD_02468 quinolinate synthase, L-aspartate oxidase (B protein) subunit 0.35 ECD_03867 thiamine biosynthesis ThiGH complex subunit low > 60
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS00345 L-aspartate oxidase 0.36 ABZR87_RS04800 thiazole synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_01133 L-aspartate oxidase 0.35 OHPLBJKB_04060 Thiazole synthase low > 73
Escherichia coli Nissle 1917 0.64 ECOLIN_RS14570 L-aspartate oxidase 0.34 ECOLIN_RS23020 thiazole synthase low > 52
Escherichia fergusonii Becca 0.63 EFB2_01322 L-aspartate oxidase 0.35 EFB2_04621 Thiazole synthase low > 86
Herbaspirillum seropedicae SmR1 0.63 HSERO_RS11085 L-aspartate oxidase 0.64 HSERO_RS02130 thiazole synthase low > 78
Variovorax sp. SCN45 0.62 GFF2580 L-aspartate oxidase (EC 1.4.3.16) 0.34 GFF1188 Thiazole synthase (EC 2.8.1.10) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF1214 L-aspartate oxidase (EC 1.4.3.16) 0.32 GFF246 Thiazole biosynthesis protein ThiG — —
Alteromonas macleodii MIT1002 0.61 MIT1002_02720 L-aspartate oxidase 0.35 MIT1002_00093 Thiazole synthase — —
Variovorax sp. OAS795 0.59 ABID97_RS07440 L-aspartate oxidase 0.34 ABID97_RS15315 thiazole synthase low > 91
Acidovorax sp. GW101-3H11 0.57 Ac3H11_3824 L-aspartate oxidase (EC 1.4.3.16) 0.31 Ac3H11_1059 Thiazole biosynthesis protein ThiG — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03690 L-aspartate oxidase 0.64 ABCV34_RS14510 thiazole synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.45 CA265_RS21185 L-aspartate oxidase 0.37 CA265_RS20180 thiazole synthase low > 88
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS05945 L-aspartate oxidase 0.35 ABI39_RS17755 thiazole synthase — —
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS11085 L-aspartate oxidase 0.35 HMPREF1058_RS03285 thiazole synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20645 L-aspartate oxidase 0.35 ABZR88_RS08825 thiazole synthase — —
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS01800 L-aspartate oxidase 0.34 HMPREF1181_RS14680 thiazole synthase — —
Bacteroides thetaiotaomicron VPI-5482 0.44 BT3184 L-aspartate oxidase (NCBI ptt file) 0.34 BT0651 thiamine biosynthesis protein ThiG (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.43 BACOVA_02888 L-aspartate oxidase 0.35 BACOVA_02359 thiazole biosynthesis protein ThiG 0.64 87
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_0526 L-aspartate oxidase (RefSeq) 0.31 DvMF_0800 thiG thiazole synthase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU1809 nadB L-aspartate oxidase (TIGR) 0.33 DVU2094 thiG thiG protein (TIGR) — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_1881 nadB L-aspartate oxidase 0.45 Synpcc7942_0576 thiG thiazole synthase — —
Sinorhizobium meliloti 1021 0.29 SMc02599 L-aspartate oxidase 0.27 SM_b20617 thiazole synthase — —
Bifidobacterium breve UCC2003 0.26 BBR_RS16725 L-aspartate oxidase 0.36 BBR_RS13965 thiazole synthase low > 34
Azospirillum sp. SherDot2 0.26 MPMX19_05671 L-aspartate oxidase 0.43 MPMX19_00262 Thiazole synthase 0.51 19
Agrobacterium fabrum C58 0.25 Atu4097 L-aspartate oxidase 0.31 Atu2566 thiamin biosynthesis ThiG low > 89
Mycobacterium tuberculosis H37Rv 0.25 Rv1595 Probable L-aspartate oxidase NadB 0.41 Rv0417 Probable thiamin biosynthesis protein ThiG (thiazole biosynthesis protein) — —
Rhodopseudomonas palustris CGA009 0.25 TX73_005420 L-aspartate oxidase 0.33 TX73_018530 thiazole synthase — —
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_03007 L-aspartate oxidase 0.56 CCNA_01957 thiazole biosynthesis protein ThiG — —
Caulobacter crescentus NA1000 0.21 CCNA_03007 L-aspartate oxidase 0.56 CCNA_01957 thiazole biosynthesis protein ThiG — —
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS00630 L-aspartate oxidase 0.52 A4249_RS07975 thiazole synthase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS18685 L-aspartate oxidase 0.40 AZOBR_RS30960 thiazole synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_10795 succinate dehydrogenase flavoprotein subunit 0.40 CA264_20420 thiazole synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.12 Echvi_2795 succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup 0.38 Echvi_3564 Uncharacterized enzyme of thiazole biosynthesis — —

Not shown: 6 genomes with orthologs for PP_1426 only; 9 genomes with orthologs for PP_5104 only