Conservation of cofitness between PP_0832 and PP_4803 in Pseudomonas putida KT2440

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1.0 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.41 10
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.88 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.89 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.89 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.89 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.88 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.90 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.90 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.88 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas sp. RS175 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.88 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.88 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 103
Pseudomonas simiae WCS417 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 0.91 PS417_24705 D-alanyl-D-alanine carboxypeptidase low > 88
Pseudomonas sp. S08-1 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.77 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.78 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Shewanella oneidensis MR-1 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.43 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Serratia liquefaciens MT49 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.42 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Shewanella loihica PV-4 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.45 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.43 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase low > 76
Rahnella sp. WP5 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Shewanella sp. ANA-3 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.44 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Dickeya dianthicola ME23 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.44 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.45 HGI48_RS09435 serine hydrolase low > 71
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.44 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Escherichia coli ECRC62 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC99 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Pantoea sp. MT58 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.42 IAI47_13090 serine hydrolase low > 76
Escherichia coli ECRC102 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BW25113 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) 0.43 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) low > 76
Escherichia coli ECRC98 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli BL21 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.43 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a low > 60
Dickeya dadantii 3937 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.44 DDA3937_RS09420 serine hydrolase low > 74
Escherichia coli ECRC101 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC101 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.43 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC low > 73
Escherichia coli ECOR27 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 57
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.43 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC low > 86
Escherichia coli ECOR38 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase low > 85
Enterobacter sp. TBS_079 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.43 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Escherichia coli Nissle 1917 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase — —
Erwinia tracheiphila SCR3 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.42 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 74
Shewanella amazonensis SB2B 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.43 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.44 HER17_RS12545 serine hydrolase low > 75
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.45 CSW01_04845 D-alanyl-D-alanine carboxypeptidase low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.41 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Marinobacter adhaerens HP15 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.54 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Alteromonas macleodii MIT1002 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.44 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.49 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.41 RR42_RS01680 cytochrome C550 low > 128
Ralstonia solanacearum GMI1000 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.40 RS_RS01610 D-alanyl-D-alanine carboxypeptidase low > 80
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.40 HSERO_RS21530 cytochrome C550 low > 78
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.40 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Ralstonia solanacearum PSI07 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.40 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Ralstonia solanacearum UW163 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.40 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.39 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.43 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 74
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.46 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.46 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Acinetobacter radioresistens SK82 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.45 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA low > 36
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.40 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.45 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Variovorax sp. OAS795 0.51 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.37 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.43 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Lysobacter sp. OAE881 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.46 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Variovorax sp. SCN45 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.43 GFF1728 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 127
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.39 BPHYT_RS02415 cytochrome C550 low > 109
Dechlorosoma suillum PS 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.46 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Acidovorax sp. GW101-3H11 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.34 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.38 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein low > 153
Paraburkholderia graminis OAS925 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.38 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.39 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.36 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 90
Azospirillum brasilense Sp245 0.42 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase 0.32 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Azospirillum sp. SherDot2 0.42 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.38 MPMX19_05873 D-alanyl-D-alanine carboxypeptidase DacA low > 112
Rhodospirillum rubrum S1H 0.40 Rru_A0281 Queuosine biosynthesis protein (NCBI) 0.36 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Rhizobium sp. OAE497 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.25 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein low > 107
Bosea sp. OAE506 0.40 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —
Agrobacterium fabrum C58 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase 0.26 Atu1499 penicillin binding protein low > 89
Dinoroseobacter shibae DFL-12 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) 0.26 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Sinorhizobium meliloti 1021 0.39 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase 0.28 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Phaeobacter inhibens DSM 17395 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA 0.27 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.29 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Magnetospirillum magneticum AMB-1 0.37 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase low > 64
Rhodopseudomonas palustris CGA009 0.35 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.30 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86

Not shown: 17 genomes with orthologs for PP_0832 only; 0 genomes with orthologs for PP_4803 only