Conservation of cofitness between PP_1906 and PP_0872 in Pseudomonas putida KT2440

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1906 ribosomal large subunit pseudouridine synthase C 1.0 PP_0872 Peptide chain release factor 3 0.35 6
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas sp. RS175 0.90 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.95 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_20125 23S rRNA pseudouridylate synthase 0.95 AO356_07285 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.93 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas simiae WCS417 0.88 PS417_21480 23S rRNA pseudouridylate synthase 0.95 PS417_04030 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.77 Pf1N1B4_1130 Peptide chain release factor 3 — —
Pseudomonas fluorescens SBW25 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.95 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.95 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_01405 23S rRNA pseudouridylate synthase 0.95 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas stutzeri RCH2 0.87 Psest_1680 pseudouridine synthase, RluA family 0.94 Psest_3351 peptide chain release factor 3 — —
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.95 PfGW456L13_5060 Peptide chain release factor 3 0.33 53
Pseudomonas sp. S08-1 0.86 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.92 OH686_08765 peptide chain release factor 3 — —
Pantoea sp. MT58 0.58 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 IAI47_03375 peptide chain release factor 3 0.44 64
Pectobacterium carotovorum WPP14 0.56 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 HER17_RS19065 peptide chain release factor 3 low > 75
Rahnella sp. WP5 0.56 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 EX31_RS04095 peptide chain release factor 3 — —
Erwinia tracheiphila SCR3 0.56 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 LU632_RS02475 prfC peptide chain release factor 3 0.63 52
Enterobacter sp. TBS_079 0.56 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.68 MPMX20_00673 Peptide chain release factor RF3 0.43 26
Escherichia coli BL21 0.56 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.67 ECD_04250 peptide chain release factor RF-3 low > 60
Escherichia coli BW25113 0.56 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.67 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.67 OHPLBJKB_03687 Peptide chain release factor RF3 0.83 18
Escherichia coli ECOR38 0.56 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 HEPCGN_09285 prfC peptide chain release factor 3 low > 85
Escherichia coli ECRC62 0.56 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 BNILDI_08000 prfC peptide chain release factor 3 — —
Escherichia coli ECOR27 0.56 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 NOLOHH_03600 prfC peptide chain release factor 3 low > 57
Alteromonas macleodii MIT1002 0.56 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.68 MIT1002_01192 Peptide chain release factor 3 low > 70
Escherichia fergusonii Becca 0.56 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.67 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli Nissle 1917 0.55 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 ECOLIN_RS25110 peptide chain release factor 3 low > 52
Escherichia coli ECRC99 0.55 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECRC101 0.55 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 OKFHMN_11280 prfC peptide chain release factor 3 — —
Escherichia coli ECRC98 0.55 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 JDDGAC_14875 prfC peptide chain release factor 3 — —
Escherichia coli ECRC102 0.55 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 NIAGMN_09130 prfC peptide chain release factor 3 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.68 GFF1035 Peptide chain release factor 3 0.77 64
Escherichia coli ECRC101 0.55 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 MCAODC_01795 prfC peptide chain release factor 3 — —
Shewanella loihica PV-4 0.55 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.69 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Enterobacter asburiae PDN3 0.55 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.68 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Shewanella amazonensis SB2B 0.55 Sama_1988 pseudouridylate synthase (RefSeq) 0.68 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Klebsiella michiganensis M5al 0.55 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.68 BWI76_RS04100 peptide chain release factor 3 low > 92
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.70 B158DRAFT_2239 peptide chain release factor 3 low > 40
Dickeya dadantii 3937 0.54 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 DDA3937_RS02445 peptide chain release factor 3 low > 74
Serratia liquefaciens MT49 0.54 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 IAI46_02875 peptide chain release factor 3 low > 86
Dickeya dianthicola ME23 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 DZA65_RS02505 peptide chain release factor 3 low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 HGI48_RS02400 peptide chain release factor 3 — —
Shewanella sp. ANA-3 0.53 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.68 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Marinobacter adhaerens HP15 0.51 HP15_2221 pseudouridine synthase, RluA family 0.69 HP15_541 peptide chain release factor 3 low > 73
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 CSW01_03470 peptide chain release factor 3 low > 62
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.64 HSERO_RS14640 peptide chain release factor 3 low > 78
Rhodanobacter denitrificans MT42 0.46 LRK55_RS17750 RluA family pseudouridine synthase 0.64 LRK55_RS05155 peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS17895 RluA family pseudouridine synthase 0.64 LRK54_RS05380 peptide chain release factor 3 — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.54 ABIE53_004717 peptide chain release factor 3 low > 113
Lysobacter sp. OAE881 0.45 ABIE51_RS11800 RluA family pseudouridine synthase 0.63 ABIE51_RS16210 peptide chain release factor 3 — —
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.64 OKGIIK_01430 prfC peptide chain release factor 3 — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS04500 RluA family pseudouridine synthase 0.53 QEN71_RS17200 peptide chain release factor 3 low > 153
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.62 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS14155 pseudouridine synthase 0.62 RR42_RS37475 peptide chain release factor 3 0.45 15
Dechlorosoma suillum PS 0.44 Dsui_2437 pseudouridine synthase, RluA family 0.61 Dsui_2418 peptide chain release factor 3 low > 51
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.54 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) 0.44 11
Ralstonia solanacearum GMI1000 0.44 RS_RS05155 RluA family pseudouridine synthase 0.60 RS_RS25080 peptide chain release factor 3 low > 80
Ralstonia solanacearum PSI07 0.44 RPSI07_RS19085 RluA family pseudouridine synthase 0.60 RPSI07_RS07810 peptide chain release factor 3 low > 81
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS10090 RluA family pseudouridine synthase 0.61 ABZR87_RS23485 peptide chain release factor 3 low > 80
Ralstonia solanacearum UW163 0.43 UW163_RS11840 RluA family pseudouridine synthase 0.60 UW163_RS16595 peptide chain release factor 3 — —
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS14375 RluA family pseudouridine synthase 0.60 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.54 BPHYT_RS34275 peptide chain release factor 3 low > 109
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS02725 RluA family pseudouridine synthase 0.64 ABZR86_RS19000 peptide chain release factor 3 — —
Variovorax sp. SCN45 0.43 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.51 GFF2045 Peptide chain release factor 3 0.63 62
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.51 Ac3H11_3041 Peptide chain release factor 3 — —
Acinetobacter radioresistens SK82 0.42 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.72 MPMX26_00476 Peptide chain release factor RF3 low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.53 GFF768 Peptide chain release factor 3 low > 90
Castellaniella sp019104865 MT123 0.40 ABCV34_RS08415 RluA family pseudouridine synthase 0.54 ABCV34_RS12505 peptide chain release factor 3 low > 48
Agrobacterium fabrum C58 0.30 Atu1471 ribosomal large subunit pseudouridine synthase C 0.48 Atu0315 peptide chain release factor 3 — —
Rhizobium sp. OAE497 0.30 ABIE40_RS09915 RluA family pseudouridine synthase 0.50 ABIE40_RS01450 peptide chain release factor 3 low > 107
Sinorhizobium meliloti 1021 0.28 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.50 SMc00427 peptide chain release factor RF-3 protein 0.61 49
Rhodospirillum rubrum S1H 0.28 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.48 Rru_A2497 Peptide chain release factor 3 (NCBI) — —
Magnetospirillum magneticum AMB-1 0.26 AMB_RS15620 RluA family pseudouridine synthase 0.51 AMB_RS01375 peptide chain release factor 3 — —
Phaeobacter inhibens DSM 17395 0.25 PGA1_c01950 ribosomal large subunit pseudouridine synthase C 0.45 PGA1_c10620 peptide chain release factor 3 — —
Azospirillum sp. SherDot2 0.25 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.48 MPMX19_01192 Peptide chain release factor 3 — —
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS07865 RluA family pseudouridine synthase 0.44 A4249_RS15275 peptide chain release factor 3 low > 48
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_1033 pseudouridine synthase, RluA family 0.45 Ga0059261_2044 peptide chain release factor 3 — —
Dinoroseobacter shibae DFL-12 0.23 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) 0.44 Dshi_1336 peptide chain release factor 3 (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.43 CCNA_01123 peptide chain release factor RF-3 low > 67
Caulobacter crescentus NA1000 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.43 CCNA_01123 peptide chain release factor RF-3 low > 66
Azospirillum brasilense Sp245 0.22 AZOBR_RS06905 pseudouridine synthase 0.49 AZOBR_RS14730 peptide chain release factor 3 — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU3191 rluC ribosomal large subunit pseudouridine synthase C (TIGR) 0.58 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55

Not shown: 2 genomes with orthologs for PP_1906 only; 12 genomes with orthologs for PP_0872 only