Conservation of cofitness between PP_1326 and PP_0434 in Pseudomonas putida KT2440

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 1.0 PP_0434 Anhydro-N-acetylmuramic acid kinase 0.57 13
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_15290 methyltransferase 0.76 AO353_07145 anhydro-N-acetylmuramic acid kinase low > 101
Pseudomonas sp. RS175 0.84 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.74 PFR28_04031 Anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.74 Pf6N2E2_4838 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 103
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4112 Protein of unknown function UPF0011 0.69 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4112 Protein of unknown function UPF0011 0.69 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_17110 methyltransferase 0.75 AO356_14500 anhydro-N-acetylmuramic acid kinase low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.76 Pf1N1B4_2562 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Pseudomonas fluorescens SBW25 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.75 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas simiae WCS417 0.83 PS417_04590 methyltransferase 0.74 PS417_25650 anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens SBW25-INTG 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.75 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.76 PfGW456L13_1235 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 87
Pseudomonas stutzeri RCH2 0.77 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.68 Psest_3637 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 67
Pseudomonas sp. S08-1 0.76 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.71 OH686_15205 Anhydro-N-acetylmuramic acid kinase low > 80
Shewanella amazonensis SB2B 0.56 Sama_3353 hypothetical protein (RefSeq) 0.44 Sama_0848 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 62
Shewanella loihica PV-4 0.55 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.46 Shew_1020 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.47 CSW01_03615 anhydro-N-acetylmuramic acid kinase low > 62
Escherichia fergusonii Becca 0.54 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.42 EFB2_02352 Anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli Nissle 1917 0.54 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 ECOLIN_RS09150 anhydro-N-acetylmuramic acid kinase — —
Marinobacter adhaerens HP15 0.54 HP15_554 tetrapyrrole methylase family protein 0.41 HP15_356 anhydro-N-acetylmuramic acid kinase low > 73
Escherichia coli ECRC102 0.54 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 NIAGMN_00580 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli BW25113 0.54 b3146 yraL predicted methyltransferase (NCBI) 0.42 b1640 ydhH anhydro-N-acetylmuramic acid kinase (NCBI) low > 76
Escherichia coli ECOR38 0.54 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 HEPCGN_05870 anmK anhydro-N-acetylmuramic acid kinase low > 85
Escherichia coli ECRC101 0.54 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 MCAODC_17925 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC98 0.54 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 JDDGAC_02075 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC99 0.54 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 KEDOAH_00620 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC101 0.54 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 OKFHMN_27485 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli BL21 0.54 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.42 ECD_01610 anhydro-N-acetylmuramic acid kinase low > 60
Escherichia coli ECOR27 0.54 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 NOLOHH_18005 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC62 0.54 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 BNILDI_16795 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.42 OHPLBJKB_02085 Anhydro-N-acetylmuramic acid kinase low > 73
Erwinia tracheiphila SCR3 0.54 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 LU632_RS11250 anmK anhydro-N-acetylmuramic acid kinase low > 74
Shewanella oneidensis MR-1 0.53 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.46 SO1313 conserved hypothetical protein (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.53 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 HER17_RS09280 anhydro-N-acetylmuramic acid kinase low > 75
Acinetobacter radioresistens SK82 0.52 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I 0.45 MPMX26_00013 Anhydro-N-acetylmuramic acid kinase low > 36
Dickeya dadantii 3937 0.52 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.44 DDA3937_RS12585 anhydro-N-acetylmuramic acid kinase low > 74
Shewanella sp. ANA-3 0.52 Shewana3_3879 hypothetical protein (RefSeq) 0.46 Shewana3_3060 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 73
Dickeya dianthicola 67-19 0.52 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 HGI48_RS12640 anhydro-N-acetylmuramic acid kinase low > 71
Dickeya dianthicola ME23 0.52 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 DZA65_RS13095 anhydro-N-acetylmuramic acid kinase low > 75
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 ABZR86_RS15665 anhydro-N-acetylmuramic acid kinase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF1521 rRNA small subunit methyltransferase I 0.44 GFF3634 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 78
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 EX28DRAFT_1636 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.45 MPMX20_01998 Anhydro-N-acetylmuramic acid kinase low > 85
Rahnella sp. WP5 0.51 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 EX31_RS13765 anhydro-N-acetylmuramic acid kinase low > 89
Klebsiella michiganensis M5al 0.51 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.43 BWI76_RS16420 anhydro-N-acetylmuramic acid kinase low > 92
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 LRK55_RS08740 anhydro-N-acetylmuramic acid kinase low > 63
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 LRK54_RS09210 anhydro-N-acetylmuramic acid kinase low > 59
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.4371.1 rRNA small subunit methyltransferase I 0.43 Xcc-8004.4878.1 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 74
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 OKGIIK_15705 anhydro-N-acetylmuramic acid kinase low > 52
Lysobacter sp. OAE881 0.49 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.37 ABIE51_RS00040 anhydro-N-acetylmuramic acid kinase low > 62
Pantoea sp. MT58 0.49 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 IAI47_10710 anhydro-N-acetylmuramic acid kinase low > 76
Serratia liquefaciens MT49 0.49 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 IAI46_11350 anhydro-N-acetylmuramic acid kinase low > 86
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS23345 16S rRNA methyltransferase 0.45 HSERO_RS02010 anhydro-N-acetylmuramic acid kinase low > 78
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.42 B158DRAFT_0004 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 40
Alteromonas macleodii MIT1002 0.46 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I 0.42 MIT1002_03153 Anhydro-N-acetylmuramic acid kinase low > 70
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.40 QEN71_RS26820 anhydro-N-acetylmuramic acid kinase low > 153
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0174 hypothetical protein 0.26 Synpcc7942_1093 anmK anhydro-N-acetylmuramic acid kinase low > 38
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS01940 16S rRNA methyltransferase 0.42 BPHYT_RS16645 anhydro-N-acetylmuramic acid kinase low > 109
Bosea sp. OAE506 0.37 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.23 ABIE41_RS00035 anhydro-N-acetylmuramic acid kinase low > 77
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.43 H281DRAFT_04259 anhydro-N-acetylmuramic acid kinase low > 103
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS19740 16S rRNA methyltransferase 0.44 RR42_RS02660 anhydro-N-acetylmuramic acid kinase low > 128
Sinorhizobium meliloti 1021 0.37 SMc00416 hypothetical protein 0.23 SMc00527 anhydro-N-acetylmuramic acid kinase 0.22 85
Rhizobium sp. OAE497 0.37 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.25 ABIE40_RS10025 anhydro-N-acetylmuramic acid kinase low > 107
Castellaniella sp019104865 MT123 0.37 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 ABCV34_RS10575 anhydro-N-acetylmuramic acid kinase low > 48
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.22 CCNA_01945 anhydro-N-acetylmuramic acid kinase low > 67
Caulobacter crescentus NA1000 0.35 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.22 CCNA_01945 anhydro-N-acetylmuramic acid kinase low > 66
Paraburkholderia graminis OAS925 0.35 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.43 ABIE53_003499 anhydro-N-acetylmuramic acid kinase low > 113
Ralstonia solanacearum UW163 0.35 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.44 UW163_RS01950 anhydro-N-acetylmuramic acid kinase — —
Agrobacterium fabrum C58 0.35 Atu0302 tetrapyrrole methylase family protein 0.24 Atu1827 hypothetical protein low > 89
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.44 RALBFv3_RS11635 anhydro-N-acetylmuramic acid kinase 0.77 47
Rhodopseudomonas palustris CGA009 0.35 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.27 TX73_012725 anhydro-N-acetylmuramic acid kinase low > 86
Ralstonia solanacearum PSI07 0.35 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 RPSI07_RS21585 anhydro-N-acetylmuramic acid kinase low > 81
Azospirillum sp. SherDot2 0.35 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.22 MPMX19_01987 Anhydro-N-acetylmuramic acid kinase low > 112
Ralstonia solanacearum GMI1000 0.35 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.44 RS_RS02460 anhydro-N-acetylmuramic acid kinase low > 80
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 ABZR87_RS07595 anhydro-N-acetylmuramic acid kinase low > 80
Variovorax sp. OAS795 0.34 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 ABID97_RS24970 anhydro-N-acetylmuramic acid kinase 0.50 63
Azospirillum brasilense Sp245 0.34 AZOBR_RS02155 16S rRNA methyltransferase 0.26 AZOBR_RS05815 anhydro-N-acetylmuramic acid kinase low > 97
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4466 rRNA small subunit methyltransferase I 0.47 Ac3H11_3055 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS22780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.24 AMB_RS15285 anhydro-N-acetylmuramic acid kinase low > 64
Variovorax sp. SCN45 0.31 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) 0.43 GFF2064 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.170) low > 127
Dinoroseobacter shibae DFL-12 0.31 Dshi_2831 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq) 0.19 Dshi_2150 protein of unknown function UPF0075 (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.26 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.20 PGA1_c11350 anhydro-N-acetylmuramic acid kinase AnmK low > 62
Rhodospirillum rubrum S1H 0.26 Rru_A3693 Protein of unknown function UPF0011 (NCBI) 0.26 Rru_A2031 Protein of unknown function UPF0075 (NCBI) low > 58

Not shown: 5 genomes with orthologs for PP_1326 only; 4 genomes with orthologs for PP_0434 only