Conservation of cofitness between PP_5104 and PP_0362 in Pseudomonas putida KT2440

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5104 thiazole synthase 1.0 PP_0362 Biotin synthase 0.60 9
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_13375 thiazole synthase 0.94 AO356_14135 biotin synthase 0.30 25
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4590 Thiazole biosynthesis protein ThiG 0.94 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) low > 103
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_08215 thiazole synthase 0.94 AO353_07525 biotin synthase low > 101
Pseudomonas sp. RS175 0.91 PFR28_04252 Thiazole synthase 0.94 PFR28_04103 Biotin synthase low > 88
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_4740 thiazole-phosphate synthase 0.94 Psyr_4687 biotin synthase 0.71 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_4740 thiazole-phosphate synthase 0.94 Psyr_4687 biotin synthase 0.60 12
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2331 Thiazole biosynthesis protein ThiG 0.94 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS28420 thiazole synthase 0.93 PFLU_RS27650 biotin synthase BioB 0.32 60
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_1000 Thiazole biosynthesis protein ThiG 0.93 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens SBW25 0.89 PFLU_RS28420 thiazole synthase 0.93 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas simiae WCS417 0.89 PS417_26775 thiazole synthase 0.93 PS417_26005 biotin synthase low > 88
Pseudomonas sp. S08-1 0.87 OH686_14285 Thiazole synthase 0.93 OH686_10355 biotin synthase 0.60 47
Pseudomonas stutzeri RCH2 0.85 Psest_0267 Uncharacterized enzyme of thiazole biosynthesis 0.92 Psest_0411 biotin synthetase 0.52 8
Lysobacter sp. OAE881 0.69 ABIE51_RS16545 thiazole synthase 0.61 ABIE51_RS01140 biotin synthase BioB — —
Marinobacter adhaerens HP15 0.68 HP15_3274 thiazole synthase 0.70 HP15_2486 biotin synthase — —
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS11645 thiazole synthase 0.58 ABZR86_RS15840 biotin synthase BioB — —
Dechlorosoma suillum PS 0.66 Dsui_1014 putative enzyme of thiazole biosynthesis 0.53 Dsui_1297 biotin synthetase — —
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.1284.1 Thiazole biosynthesis protein ThiG 0.58 Xcc-8004.505.1 Biotin synthase (EC 2.8.1.6) low > 74
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_11895 thiS thiazole synthase 0.56 OKGIIK_13650 bioB biotin synthase BioB low > 52
Acinetobacter radioresistens SK82 0.65 MPMX26_01107 Thiazole synthase 0.59 MPMX26_01785 Biotin synthase low > 36
Castellaniella sp019104865 MT123 0.64 ABCV34_RS14510 thiazole synthase 0.54 ABCV34_RS15280 biotin synthase BioB — —
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS02130 thiazole synthase 0.51 HSERO_RS12235 biotin synthase 0.35 50
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_01957 thiazole biosynthesis protein ThiG 0.55 CCNA_03636 biotin synthase — —
Caulobacter crescentus NA1000 0.56 CCNA_01957 thiazole biosynthesis protein ThiG 0.55 CCNA_03636 biotin synthase — —
Synechococcus elongatus PCC 7942 0.45 Synpcc7942_0576 thiG thiazole synthase 0.51 Synpcc7942_0419 bioB biotin synthase — —
Mycobacterium tuberculosis H37Rv 0.41 Rv0417 Probable thiamin biosynthesis protein ThiG (thiazole biosynthesis protein) 0.26 Rv1589 Probable biotin synthetase BioB — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_20420 thiazole synthase 0.48 CA264_02425 biotin synthase BioB low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_3564 Uncharacterized enzyme of thiazole biosynthesis 0.52 Echvi_2566 biotin synthetase low > 79
Pectobacterium carotovorum WPP14 0.37 HER17_RS20400 thiazole synthase 0.67 HER17_RS13460 biotin synthase BioB 0.74 52
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00355 thiazole synthase 0.69 CSW01_05645 biotin synthase low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS20180 thiazole synthase 0.47 CA265_RS09475 biotin synthase BioB low > 88
Rahnella sp. WP5 0.36 EX31_RS16795 thiazole synthase 0.68 EX31_RS23695 biotin synthase BioB low > 89
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0291 thiazole-phosphate synthase 0.67 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) — —
Shewanella sp. ANA-3 0.36 Shewana3_1940 thiG thiazole synthase (RefSeq) 0.65 Shewana3_2519 biotin synthase (RefSeq) low > 73
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS04800 thiazole synthase 0.61 ABZR87_RS06265 biotin synthase BioB — —
Dickeya dianthicola ME23 0.36 DZA65_RS01195 thiazole synthase 0.67 DZA65_RS08965 biotin synthase BioB 0.69 39
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS27930 thiazole synthase 0.59 QEN71_RS01085 biotin synthase BioB — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS23435 thiazole synthase 0.61 RPSI07_RS22850 biotin synthase BioB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4202 Thiazole biosynthesis protein ThiG 0.67 GFF671 Biotin synthase (EC 2.8.1.6) 0.44 63
Klebsiella michiganensis M5al 0.35 BWI76_RS01535 thiazole synthase 0.68 BWI76_RS08760 biotin synthase 0.31 26
Dickeya dadantii 3937 0.35 DDA3937_RS01155 thiazole synthase 0.67 DDA3937_RS08510 biotin synthase BioB 0.61 55
Escherichia coli ECOR38 0.35 HEPCGN_12030 thiG thiazole synthase 0.68 HEPCGN_01640 bioB biotin synthase BioB low > 85
Escherichia coli BW25113 0.35 b3991 thiG thiamin biosynthesis, thiazole moiety (VIMSS) 0.68 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli ECRC62 0.35 BNILDI_05985 thiG thiazole synthase 0.68 BNILDI_21040 bioB biotin synthase BioB — —
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS09925 thiazole synthase 0.60 RALBFv3_RS10465 biotin synthase BioB — —
Ralstonia solanacearum GMI1000 0.35 RS_RS00535 thiazole synthase 0.61 RS_RS01305 biotin synthase — —
Escherichia coli ECRC102 0.35 NIAGMN_11145 thiG thiazole synthase 0.68 NIAGMN_04445 bioB biotin synthase BioB — —
Escherichia coli ECRC99 0.35 KEDOAH_14765 thiG thiazole synthase 0.68 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia coli ECRC101 0.35 OKFHMN_13395 thiG thiazole synthase 0.68 OKFHMN_06400 bioB biotin synthase BioB — —
Ralstonia solanacearum UW163 0.35 UW163_RS03655 thiazole synthase 0.60 UW163_RS03115 biotin synthase BioB — —
Shewanella amazonensis SB2B 0.35 Sama_1856 thiG thiazole synthase (RefSeq) 0.65 Sama_1438 biotin synthase (RefSeq) — —
Escherichia coli BL21 0.35 ECD_03867 thiamine biosynthesis ThiGH complex subunit 0.68 ECD_00742 biotin synthase low > 60
Escherichia coli ECOR27 0.35 NOLOHH_05540 thiG thiazole synthase 0.68 NOLOHH_22770 bioB biotin synthase BioB low > 57
Escherichia coli ECRC101 0.35 MCAODC_03895 thiG thiazole synthase 0.68 MCAODC_25615 bioB biotin synthase BioB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_04060 Thiazole synthase 0.68 OHPLBJKB_02938 Biotin synthase low > 73
Escherichia coli ECRC98 0.35 JDDGAC_17020 thiG thiazole synthase 0.68 JDDGAC_10035 bioB biotin synthase BioB — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00093 Thiazole synthase 0.69 MIT1002_01379 Biotin synthase 0.93 9
Fusobacterium nucleatum SB010 0.35 HUW76_10275 thiazole synthase 0.24 HUW76_05115 biotin synthase BioB low > 35
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS17775 thiazole synthase 0.58 BPHYT_RS02150 biotin synthase — —
Phocaeicola vulgatus CL09T03C04 0.35 HMPREF1058_RS03285 thiazole synthase 0.23 HMPREF1058_RS17950 biotin synthase BioB low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS08825 thiazole synthase 0.47 ABZR88_RS10190 biotin synthase BioB low > 71
Escherichia fergusonii Becca 0.35 EFB2_04621 Thiazole synthase 0.68 EFB2_03330 Biotin synthase low > 86
Enterobacter asburiae PDN3 0.35 EX28DRAFT_4532 Uncharacterized enzyme of thiazole biosynthesis 0.66 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Paraburkholderia graminis OAS925 0.35 ABIE53_003714 thiazole synthase 0.58 ABIE53_000577 biotin synthase — —
Shewanella loihica PV-4 0.35 Shew_2092 thiazole biosynthesis family protein (RefSeq) 0.64 Shew_1719 biotin synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.35 SO2441 thiG thiG protein (NCBI ptt file) 0.65 SO2740 bioB biotin synthase (NCBI ptt file) — —
Dickeya dianthicola 67-19 0.35 HGI48_RS01150 thiazole synthase 0.66 HGI48_RS08675 biotin synthase BioB 0.68 24
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_05639 thiazole-phosphate synthase 0.58 H281DRAFT_02097 biotin synthase — —
Serratia liquefaciens MT49 0.34 IAI46_01300 thiazole synthase 0.68 IAI46_06525 biotin synthase BioB low > 86
Escherichia coli Nissle 1917 0.34 ECOLIN_RS23020 thiazole synthase 0.68 ECOLIN_RS04130 biotin synthase BioB — —
Variovorax sp. OAS795 0.34 ABID97_RS15315 thiazole synthase 0.53 ABID97_RS13955 biotin synthase BioB low > 91
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS01305 thiazole synthase 0.58 RR42_RS00940 biotin synthase — —
Enterobacter sp. TBS_079 0.34 MPMX20_00213 Thiazole synthase 0.67 MPMX20_01403 Biotin synthase low > 85
Erwinia tracheiphila SCR3 0.34 LU632_RS00950 thiazole synthase 0.68 LU632_RS09130 bioB biotin synthase BioB — —
Variovorax sp. SCN45 0.34 GFF1188 Thiazole synthase (EC 2.8.1.10) 0.52 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Rhodopseudomonas palustris CGA009 0.33 TX73_018530 thiazole synthase 0.55 TX73_010535 biotin synthase BioB — —
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU2094 thiG thiG protein (TIGR) 0.23 DVU2558 bioB biotin synthase (Dmitry Rodionov) low > 55
Phaeobacter inhibens DSM 17395 0.33 PGA1_c09070 thiazole biosynthesis protein ThiG 0.54 PGA1_c09120 biotin synthase BioB low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF246 Thiazole biosynthesis protein ThiG 0.56 GFF3992 Biotin synthase (EC 2.8.1.6) — —
Agrobacterium fabrum C58 0.31 Atu2566 thiamin biosynthesis ThiG 0.57 Atu3997 biotin synthetase low > 89
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_0800 thiG thiazole synthase (RefSeq) 0.21 DvMF_1001 biotin synthase (RefSeq) low > 51
Pantoea sp. MT58 0.31 IAI47_20700 thiazole synthase 0.67 IAI47_13530 biotin synthase BioB low > 76
Acidovorax sp. GW101-3H11 0.31 Ac3H11_1059 Thiazole biosynthesis protein ThiG 0.53 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) — —

Not shown: 11 genomes with orthologs for PP_5104 only; 8 genomes with orthologs for PP_0362 only