Conservation of cofitness between PP_1426 and PP_0362 in Pseudomonas putida KT2440

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1426 L-aspartate oxidase 1.0 PP_0362 Biotin synthase 0.51 8
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS07225 L-aspartate oxidase 0.93 PFLU_RS27650 biotin synthase BioB 0.56 4
Pseudomonas fluorescens SBW25 0.90 PFLU_RS07225 L-aspartate oxidase 0.93 PFLU_RS27650 biotin synthase BioB 0.74 2
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_17620 L-aspartate oxidase 0.94 AO353_07525 biotin synthase 0.36 32
Pseudomonas simiae WCS417 0.90 PS417_07115 L-aspartate oxidase 0.93 PS417_26005 biotin synthase low > 88
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4517 L-aspartate oxidase (EC 1.4.3.16) 0.93 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) 0.61 3
Pseudomonas sp. RS175 0.89 PFR28_00689 L-aspartate oxidase 0.94 PFR28_04103 Biotin synthase 0.37 31
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3322 L-aspartate oxidase (EC 1.4.3.16) 0.94 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) 0.37 16
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_3959 L-aspartate oxidase 0.94 Psyr_4687 biotin synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_3959 L-aspartate oxidase 0.94 Psyr_4687 biotin synthase low > 86
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_04580 L-aspartate oxidase 0.94 AO356_14135 biotin synthase low > 104
Pseudomonas sp. S08-1 0.87 OH686_20040 L-aspartate oxidase 0.93 OH686_10355 biotin synthase low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_3101 L-aspartate oxidase 0.92 Psest_0411 biotin synthetase 0.19 56
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2758 L-aspartate oxidase (EC 1.4.3.16) 0.94 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) 0.30 24
Marinobacter adhaerens HP15 0.72 HP15_774 L-aspartate oxidase 0.70 HP15_2486 biotin synthase 0.53 54
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_2179 L-aspartate oxidase (EC 1.4.3.16) 0.67 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) — —
Shewanella amazonensis SB2B 0.67 Sama_0873 L-aspartate oxidase (RefSeq) 0.65 Sama_1438 biotin synthase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12495 L-aspartate oxidase 0.69 CSW01_05645 biotin synthase low > 62
Shewanella oneidensis MR-1 0.66 SO1341 nadB L-aspartate oxidase (NCBI ptt file) 0.65 SO2740 bioB biotin synthase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.66 Shewana3_3033 L-aspartate oxidase (RefSeq) 0.65 Shewana3_2519 biotin synthase (RefSeq) — —
Serratia liquefaciens MT49 0.66 IAI46_19590 L-aspartate oxidase 0.68 IAI46_06525 biotin synthase BioB low > 86
Shewanella loihica PV-4 0.66 Shew_1047 L-aspartate oxidase (RefSeq) 0.64 Shew_1719 biotin synthase (RefSeq) — —
Dickeya dianthicola 67-19 0.66 HGI48_RS15855 L-aspartate oxidase 0.66 HGI48_RS08675 biotin synthase BioB 0.72 64
Dickeya dadantii 3937 0.66 DDA3937_RS15770 L-aspartate oxidase 0.67 DDA3937_RS08510 biotin synthase BioB low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS16935 L-aspartate oxidase 0.67 DZA65_RS08965 biotin synthase BioB 0.56 75
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS03070 L-aspartate oxidase 0.59 QEN71_RS01085 biotin synthase BioB — —
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_04069 L-aspartate oxidase 0.58 H281DRAFT_02097 biotin synthase low > 103
Paraburkholderia graminis OAS925 0.65 ABIE53_003292 L-aspartate oxidase 0.58 ABIE53_000577 biotin synthase 0.23 99
Pectobacterium carotovorum WPP14 0.65 HER17_RS05775 L-aspartate oxidase 0.67 HER17_RS13460 biotin synthase BioB low > 75
Pantoea sp. MT58 0.64 IAI47_04845 L-aspartate oxidase 0.67 IAI47_13530 biotin synthase BioB low > 76
Klebsiella michiganensis M5al 0.64 BWI76_RS21360 L-aspartate oxidase 0.68 BWI76_RS08760 biotin synthase low > 92
Enterobacter sp. TBS_079 0.64 MPMX20_03445 L-aspartate oxidase 0.67 MPMX20_01403 Biotin synthase low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_0071 L-aspartate oxidase (EC 1.4.3.16) 0.66 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Ralstonia solanacearum PSI07 0.64 RPSI07_RS12660 L-aspartate oxidase 0.61 RPSI07_RS22850 biotin synthase BioB low > 81
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS17010 L-aspartate oxidase 0.58 RR42_RS00940 biotin synthase 0.69 6
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS15640 L-aspartate oxidase 0.58 BPHYT_RS02150 biotin synthase low > 109
Dechlorosoma suillum PS 0.64 Dsui_2452 L-aspartate oxidase 0.53 Dsui_1297 biotin synthetase — —
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS04725 L-aspartate oxidase 0.60 RALBFv3_RS10465 biotin synthase BioB low > 76
Rahnella sp. WP5 0.64 EX31_RS21795 L-aspartate oxidase 0.68 EX31_RS23695 biotin synthase BioB low > 89
Ralstonia solanacearum UW163 0.64 UW163_RS08945 L-aspartate oxidase 0.60 UW163_RS03115 biotin synthase BioB — —
Acinetobacter radioresistens SK82 0.64 MPMX26_02162 L-aspartate oxidase 0.59 MPMX26_01785 Biotin synthase low > 36
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF2106 L-aspartate oxidase (EC 1.4.3.16) 0.67 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Ralstonia solanacearum GMI1000 0.64 RS_RS12285 L-aspartate oxidase 0.61 RS_RS01305 biotin synthase low > 80
Escherichia coli ECRC102 0.64 NIAGMN_19140 nadB L-aspartate oxidase 0.68 NIAGMN_04445 bioB biotin synthase BioB — —
Escherichia coli ECOR27 0.64 NOLOHH_13045 nadB L-aspartate oxidase 0.68 NOLOHH_22770 bioB biotin synthase BioB low > 57
Escherichia coli ECRC101 0.64 MCAODC_11900 nadB L-aspartate oxidase 0.68 MCAODC_25615 bioB biotin synthase BioB — —
Escherichia coli ECRC98 0.64 JDDGAC_25035 nadB L-aspartate oxidase 0.68 JDDGAC_10035 bioB biotin synthase BioB — —
Escherichia coli ECRC99 0.64 KEDOAH_06850 nadB L-aspartate oxidase 0.68 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia coli ECRC101 0.64 OKFHMN_21370 nadB L-aspartate oxidase 0.68 OKFHMN_06400 bioB biotin synthase BioB — —
Escherichia coli ECRC62 0.64 BNILDI_11845 nadB L-aspartate oxidase 0.68 BNILDI_21040 bioB biotin synthase BioB — —
Escherichia coli ECOR38 0.64 HEPCGN_20515 nadB L-aspartate oxidase 0.68 HEPCGN_01640 bioB biotin synthase BioB low > 85
Escherichia coli BW25113 0.64 b2574 nadB L-aspartate oxidase (NCBI) 0.68 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli BL21 0.64 ECD_02468 quinolinate synthase, L-aspartate oxidase (B protein) subunit 0.68 ECD_00742 biotin synthase low > 60
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS00345 L-aspartate oxidase 0.61 ABZR87_RS06265 biotin synthase BioB 0.84 5
Escherichia coli Nissle 1917 0.64 ECOLIN_RS14570 L-aspartate oxidase 0.68 ECOLIN_RS04130 biotin synthase BioB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_01133 L-aspartate oxidase 0.68 OHPLBJKB_02938 Biotin synthase low > 73
Escherichia fergusonii Becca 0.63 EFB2_01322 L-aspartate oxidase 0.68 EFB2_03330 Biotin synthase low > 86
Herbaspirillum seropedicae SmR1 0.63 HSERO_RS11085 L-aspartate oxidase 0.51 HSERO_RS12235 biotin synthase low > 78
Variovorax sp. SCN45 0.62 GFF2580 L-aspartate oxidase (EC 1.4.3.16) 0.52 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF1214 L-aspartate oxidase (EC 1.4.3.16) 0.56 GFF3992 Biotin synthase (EC 2.8.1.6) low > 90
Alteromonas macleodii MIT1002 0.61 MIT1002_02720 L-aspartate oxidase 0.69 MIT1002_01379 Biotin synthase — —
Magnetospirillum magneticum AMB-1 0.60 AMB_RS19650 L-aspartate oxidase 0.59 AMB_RS13865 biotin synthase — —
Variovorax sp. OAS795 0.59 ABID97_RS07440 L-aspartate oxidase 0.53 ABID97_RS13955 biotin synthase BioB low > 91
Acidovorax sp. GW101-3H11 0.57 Ac3H11_3824 L-aspartate oxidase (EC 1.4.3.16) 0.53 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03690 L-aspartate oxidase 0.54 ABCV34_RS15280 biotin synthase BioB low > 48
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_2248 L-aspartate oxidase (EC 1.4.3.16) 0.54 Ga0059261_3989 biotin synthase (EC 2.8.1.6) — —
Pedobacter sp. GW460-11-11-14-LB5 0.45 CA265_RS21185 L-aspartate oxidase 0.47 CA265_RS09475 biotin synthase BioB low > 88
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS11085 L-aspartate oxidase 0.23 HMPREF1058_RS17950 biotin synthase BioB — —
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS06605 L-aspartate oxidase 0.26 HMPREF1078_RS15300 biotin synthase BioB — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20645 L-aspartate oxidase 0.47 ABZR88_RS10190 biotin synthase BioB — —
Desulfovibrio vulgaris Miyazaki F 0.35 DvMF_0526 L-aspartate oxidase (RefSeq) 0.21 DvMF_1001 biotin synthase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU1809 nadB L-aspartate oxidase (TIGR) 0.23 DVU2558 bioB biotin synthase (Dmitry Rodionov) — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_1881 nadB L-aspartate oxidase 0.51 Synpcc7942_0419 bioB biotin synthase — —
Methanococcus maripaludis S2 0.26 MMP_RS06565 fumarate reductase subunit A 0.19 MMP_RS06370 biotin synthase BioB — —
Methanococcus maripaludis JJ 0.25 MMJJ_RS07785 fumarate reductase subunit A 0.19 MMJJ_RS07980 biotin synthase BioB low > 28
Agrobacterium fabrum C58 0.25 Atu4097 L-aspartate oxidase 0.57 Atu3997 biotin synthetase 0.82 6
Mycobacterium tuberculosis H37Rv 0.25 Rv1595 Probable L-aspartate oxidase NadB 0.26 Rv1589 Probable biotin synthetase BioB — —
Rhodopseudomonas palustris CGA009 0.25 TX73_005420 L-aspartate oxidase 0.55 TX73_010535 biotin synthase BioB — —
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_03007 L-aspartate oxidase 0.55 CCNA_03636 biotin synthase — —
Caulobacter crescentus NA1000 0.21 CCNA_03007 L-aspartate oxidase 0.55 CCNA_03636 biotin synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_10795 succinate dehydrogenase flavoprotein subunit 0.48 CA264_02425 biotin synthase BioB — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.12 Echvi_2795 succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup 0.52 Echvi_2566 biotin synthetase — —

Not shown: 10 genomes with orthologs for PP_1426 only; 10 genomes with orthologs for PP_0362 only