Conservation of cofitness between PP_0366 and PP_0362 in Pseudomonas putida KT2440

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0366 dethiobiotin synthetase 1.0 PP_0362 Biotin synthase 0.82 5
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.93 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) 0.91 4
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.94 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) 0.84 4
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_14155 dethiobiotin synthetase 0.94 AO356_14135 biotin synthase 0.70 5
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.94 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) 0.80 4
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27630 dethiobiotin synthase 0.93 PFLU_RS27650 biotin synthase BioB 0.69 6
Pseudomonas sp. RS175 0.77 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.94 PFR28_04103 Biotin synthase — —
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27630 dethiobiotin synthase 0.93 PFLU_RS27650 biotin synthase BioB 0.80 4
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_07505 dethiobiotin synthetase 0.94 AO353_07525 biotin synthase 0.94 4
Pseudomonas simiae WCS417 0.76 PS417_25985 dethiobiotin synthetase 0.93 PS417_26005 biotin synthase 0.65 2
Pseudomonas sp. S08-1 0.72 OH686_10335 dethiobiotin synthase 0.93 OH686_10355 biotin synthase 0.96 4
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_4683 dethiobiotin synthase 0.94 Psyr_4687 biotin synthase 0.78 1
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_4683 dethiobiotin synthase 0.94 Psyr_4687 biotin synthase 0.82 2
Pseudomonas stutzeri RCH2 0.62 Psest_0415 dethiobiotin synthase 0.92 Psest_0411 biotin synthetase 0.81 4
Shewanella loihica PV-4 0.53 Shew_1722 dethiobiotin synthase (RefSeq) 0.64 Shew_1719 biotin synthase (RefSeq) — —
Shewanella sp. ANA-3 0.51 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.65 Shewana3_2519 biotin synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.51 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.65 SO2740 bioB biotin synthase (NCBI ptt file) — —
Marinobacter adhaerens HP15 0.49 HP15_2482 dethiobiotin synthetase 0.70 HP15_2486 biotin synthase 0.51 19
Pantoea sp. MT58 0.47 IAI47_13515 ATP-dependent dethiobiotin synthetase BioD 0.67 IAI47_13530 biotin synthase BioB 0.29 1
Dickeya dianthicola ME23 0.47 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD 0.67 DZA65_RS08965 biotin synthase BioB 0.53 34
Dickeya dianthicola 67-19 0.47 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD 0.66 HGI48_RS08675 biotin synthase BioB 0.75 2
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS12700 dethiobiotin synthase 0.58 ABZR86_RS15840 biotin synthase BioB low > 74
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2213 dethiobiotin synthase 0.66 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_05660 dethiobiotin synthase 0.69 CSW01_05645 biotin synthase low > 62
Dickeya dadantii 3937 0.45 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD 0.67 DDA3937_RS08510 biotin synthase BioB low > 74
Serratia liquefaciens MT49 0.45 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD 0.68 IAI46_06525 biotin synthase BioB low > 86
Enterobacter sp. TBS_079 0.45 MPMX20_01406 ATP-dependent dethiobiotin synthetase BioD 1 0.67 MPMX20_01403 Biotin synthase low > 85
Escherichia coli Nissle 1917 0.44 ECOLIN_RS04145 dethiobiotin synthase 0.68 ECOLIN_RS04130 biotin synthase BioB — —
Escherichia fergusonii Becca 0.44 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 0.68 EFB2_03330 Biotin synthase low > 86
Klebsiella michiganensis M5al 0.44 BWI76_RS08775 dethiobiotin synthase 0.68 BWI76_RS08760 biotin synthase 0.41 1
Escherichia coli ECRC101 0.44 MCAODC_25600 bioD dethiobiotin synthase 0.68 MCAODC_25615 bioB biotin synthase BioB — —
Escherichia coli ECRC99 0.44 KEDOAH_21525 bioD dethiobiotin synthase 0.68 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia coli BL21 0.44 ECD_00745 dethiobiotin synthetase 0.68 ECD_00742 biotin synthase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 0.68 OHPLBJKB_02938 Biotin synthase low > 73
Escherichia coli ECRC98 0.44 JDDGAC_10020 bioD dethiobiotin synthase 0.68 JDDGAC_10035 bioB biotin synthase BioB — —
Escherichia coli BW25113 0.44 b0778 bioD dethiobiotin synthetase (NCBI) 0.68 b0775 bioB biotin synthase (NCBI) 0.49 1
Escherichia coli ECRC101 0.44 OKFHMN_06385 bioD dethiobiotin synthase 0.68 OKFHMN_06400 bioB biotin synthase BioB — —
Escherichia coli ECRC102 0.44 NIAGMN_04430 bioD dethiobiotin synthase 0.68 NIAGMN_04445 bioB biotin synthase BioB — —
Escherichia coli ECOR27 0.44 NOLOHH_22755 bioD dethiobiotin synthase 0.68 NOLOHH_22770 bioB biotin synthase BioB low > 57
Pectobacterium carotovorum WPP14 0.44 HER17_RS13445 dethiobiotin synthase 0.67 HER17_RS13460 biotin synthase BioB low > 75
Escherichia coli ECRC62 0.43 BNILDI_21025 bioD dethiobiotin synthase 0.68 BNILDI_21040 bioB biotin synthase BioB — —
Dechlorosoma suillum PS 0.43 Dsui_2884 dethiobiotin synthase 0.53 Dsui_1297 biotin synthetase 0.77 5
Escherichia coli ECOR38 0.43 HEPCGN_01655 bioD dethiobiotin synthase 0.68 HEPCGN_01640 bioB biotin synthase BioB low > 85
Erwinia tracheiphila SCR3 0.43 LU632_RS09145 bioD dethiobiotin synthase 0.68 LU632_RS09130 bioB biotin synthase BioB — —
Lysobacter sp. OAE881 0.42 ABIE51_RS17990 dethiobiotin synthase 0.61 ABIE51_RS01140 biotin synthase BioB low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) 0.56 GFF3992 Biotin synthase (EC 2.8.1.6) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF674 Dethiobiotin synthetase (EC 6.3.3.3) 0.67 GFF671 Biotin synthase (EC 2.8.1.6) 0.40 47
Shewanella amazonensis SB2B 0.42 Sama_1441 bioD dithiobiotin synthetase (RefSeq) 0.65 Sama_1438 biotin synthase (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_16455 bioD dethiobiotin synthase 0.56 OKGIIK_13650 bioB biotin synthase BioB low > 52
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS07180 dethiobiotin synthase 0.55 LRK54_RS10260 biotin synthase BioB low > 59
Rahnella sp. WP5 0.41 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD 0.68 EX31_RS23695 biotin synthase BioB 0.54 16
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06915 dethiobiotin synthase 0.55 LRK55_RS09900 biotin synthase BioB low > 63
Alteromonas macleodii MIT1002 0.40 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 0.69 MIT1002_01379 Biotin synthase 0.97 3
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_0869 dethiobiotin synthase 0.67 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) — —
Variovorax sp. OAS795 0.37 ABID97_RS16255 dethiobiotin synthase 0.53 ABID97_RS13955 biotin synthase BioB — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS12255 dethiobiotin synthetase 0.51 HSERO_RS12235 biotin synthase 0.48 1
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02155 dithiobiotin synthetase 0.58 BPHYT_RS02150 biotin synthase 0.48 3
Variovorax sp. SCN45 0.36 GFF143 Dethiobiotin synthase BioD (EC 6.3.3.3) 0.52 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS00825 dethiobiotin synthase 0.60 RALBFv3_RS10465 biotin synthase BioB — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) 0.53 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Ralstonia solanacearum UW163 0.35 UW163_RS14160 dethiobiotin synthase 0.60 UW163_RS03115 biotin synthase BioB — —
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02096 dethiobiotin synthetase 0.58 H281DRAFT_02097 biotin synthase 0.77 3
Paraburkholderia graminis OAS925 0.34 ABIE53_000578 dethiobiotin synthetase 0.58 ABIE53_000577 biotin synthase 0.92 2
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.4530.1 Dethiobiotin synthetase (EC 6.3.3.3) 0.58 Xcc-8004.505.1 Biotin synthase (EC 2.8.1.6) 0.81 3
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS12345 dethiobiotin synthase 0.61 ABZR87_RS06265 biotin synthase BioB 0.43 15
Ralstonia solanacearum PSI07 0.33 RPSI07_RS16695 dethiobiotin synthase 0.61 RPSI07_RS22850 biotin synthase BioB low > 81
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS01090 dethiobiotin synthase 0.59 QEN71_RS01085 biotin synthase BioB — —
Ralstonia solanacearum GMI1000 0.32 RS_RS07440 ATP-dependent dethiobiotin synthetase BioD 0.61 RS_RS01305 biotin synthase — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS00935 dethiobiotin synthetase 0.58 RR42_RS00940 biotin synthase — —
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS15275 dethiobiotin synthase 0.26 HMPREF1078_RS15300 biotin synthase BioB 0.96 2
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_1009 dethiobiotin synthase (RefSeq) 0.21 DvMF_1001 biotin synthase (RefSeq) low > 51
Rhizobium sp. OAE497 0.15 ABIE40_RS21065 dethiobiotin synthase 0.55 ABIE40_RS21075 biotin synthase BioB low > 107
Synechococcus elongatus PCC 7942 0.15 Synpcc7942_0030 bioD dethiobiotin synthase 0.51 Synpcc7942_0419 bioB biotin synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.14 CA265_RS09760 dethiobiotin synthase 0.47 CA265_RS09475 biotin synthase BioB low > 88
Castellaniella sp019104865 MT123 0.14 ABCV34_RS15285 dethiobiotin synthase 0.54 ABCV34_RS15280 biotin synthase BioB low > 48
Agrobacterium fabrum C58 0.14 Atu3999 dithiobiotin synthetase 0.57 Atu3997 biotin synthetase 0.75 4
Methanococcus maripaludis S2 0.13 MMP_RS08095 dethiobiotin synthase 0.19 MMP_RS06370 biotin synthase BioB 0.97 2
Phaeobacter inhibens DSM 17395 0.13 PGA1_c09140 dethiobiotin synthetase BioD 0.54 PGA1_c09120 biotin synthase BioB 0.51 4
Methanococcus maripaludis JJ 0.13 MMJJ_RS06270 dethiobiotin synthase 0.19 MMJJ_RS07980 biotin synthase BioB 0.96 2
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_02415 dethiobiotin synthase 0.48 CA264_02425 biotin synthase BioB low > 74

Not shown: 3 genomes with orthologs for PP_0366 only; 12 genomes with orthologs for PP_0362 only