Conservation of cofitness between PFLU_RS03610 and PFLU_RS27305 in Pseudomonas fluorescens SBW25

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS03610 redox-regulated ATPase YchF 1.0 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase 0.77 20
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS03610 redox-regulated ATPase YchF 1.00 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas simiae WCS417 0.97 PS417_03560 GTP-binding protein 0.93 PS417_25650 anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_16450 GTP-binding protein 0.86 AO356_14500 anhydro-N-acetylmuramic acid kinase low > 104
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.88 PfGW456L13_1235 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_14740 GTP-binding protein 0.88 AO353_07145 anhydro-N-acetylmuramic acid kinase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.96 Psyr_0941 Conserved hypothetical protein 92 0.73 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas syringae pv. syringae B728a 0.96 Psyr_0941 Conserved hypothetical protein 92 0.73 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas fluorescens FW300-N1B4 0.95 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.87 Pf1N1B4_2562 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Pseudomonas sp. RS175 0.94 PFR28_03664 Ribosome-binding ATPase YchF 0.85 PFR28_04031 Anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas putida KT2440 0.92 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.74 PP_0434 Anhydro-N-acetylmuramic acid kinase low > 96
Pseudomonas sp. S08-1 0.90 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.71 OH686_15205 Anhydro-N-acetylmuramic acid kinase low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_1103 GTP-binding protein YchF 0.69 Psest_3637 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 67
Marinobacter adhaerens HP15 0.75 HP15_704 translation-associated GTPase 0.43 HP15_356 anhydro-N-acetylmuramic acid kinase low > 73
Acinetobacter radioresistens SK82 0.75 MPMX26_01861 Ribosome-binding ATPase YchF 0.41 MPMX26_00013 Anhydro-N-acetylmuramic acid kinase low > 36
Shewanella amazonensis SB2B 0.71 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.45 Sama_0848 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 62
Shewanella sp. ANA-3 0.71 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.45 Shewana3_3060 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.71 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.44 SO1313 conserved hypothetical protein (NCBI ptt file) low > 76
Escherichia coli ECRC62 0.70 BNILDI_18805 ychF redox-regulated ATPase YchF 0.43 BNILDI_16795 anmK anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.43 OHPLBJKB_02085 Anhydro-N-acetylmuramic acid kinase low > 73
Escherichia fergusonii Becca 0.70 EFB2_02724 Ribosome-binding ATPase YchF 0.42 EFB2_02352 Anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli ECRC100 0.70 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.43 OKFHMN_27485 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC98 0.70 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.43 JDDGAC_02075 anmK anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli ECOR27 0.70 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.43 NOLOHH_18005 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli BW25113 0.70 b1203 ychF translation-associated GTPase (NCBI) 0.43 b1640 ydhH anhydro-N-acetylmuramic acid kinase (NCBI) — —
Escherichia coli ECRC101 0.70 MCAODC_21850 ychF redox-regulated ATPase YchF 0.43 MCAODC_17925 anmK anhydro-N-acetylmuramic acid kinase low > 87
Escherichia coli ECOR38 0.70 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.43 HEPCGN_05870 anmK anhydro-N-acetylmuramic acid kinase low > 87
Escherichia coli Nissle 1917 0.70 ECOLIN_RS07280 redox-regulated ATPase YchF 0.42 ECOLIN_RS09150 anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC99 0.70 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.43 KEDOAH_00620 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC102 0.70 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.43 NIAGMN_00580 anmK anhydro-N-acetylmuramic acid kinase — —
Erwinia tracheiphila SCR3 0.70 LU632_RS13950 ychF redox-regulated ATPase YchF 0.46 LU632_RS11250 anmK anhydro-N-acetylmuramic acid kinase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.70 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.45 GFF3634 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 78
Escherichia coli BL21 0.70 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.43 ECD_01610 anhydro-N-acetylmuramic acid kinase — —
Dickeya dadantii 3937 0.69 DDA3937_RS11035 redox-regulated ATPase YchF 0.42 DDA3937_RS12585 anhydro-N-acetylmuramic acid kinase low > 74
Dickeya dianthicola 67-19 0.69 HGI48_RS10975 redox-regulated ATPase YchF 0.42 HGI48_RS12640 anhydro-N-acetylmuramic acid kinase low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS11435 redox-regulated ATPase YchF 0.42 DZA65_RS13095 anhydro-N-acetylmuramic acid kinase low > 75
Pantoea sp. MT58 0.69 IAI47_11310 redox-regulated ATPase YchF 0.45 IAI47_10710 anhydro-N-acetylmuramic acid kinase low > 76
Kangiella aquimarina DSM 16071 0.69 B158DRAFT_2052 GTP-binding protein YchF 0.43 B158DRAFT_0004 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 40
Pectobacterium carotovorum WPP14 0.69 HER17_RS10445 redox-regulated ATPase YchF 0.44 HER17_RS09280 anhydro-N-acetylmuramic acid kinase low > 75
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS22010 redox-regulated ATPase YchF 0.41 ABZR86_RS15665 anhydro-N-acetylmuramic acid kinase low > 74
Lysobacter sp. OAE881 0.68 ABIE51_RS05745 redox-regulated ATPase YchF 0.38 ABIE51_RS00040 anhydro-N-acetylmuramic acid kinase low > 62
Klebsiella michiganensis M5al 0.68 BWI76_RS17485 GTP-binding protein YchF 0.43 BWI76_RS16420 anhydro-N-acetylmuramic acid kinase — —
Alteromonas macleodii MIT1002 0.68 MIT1002_01504 Ribosome-binding ATPase YchF 0.41 MIT1002_03153 Anhydro-N-acetylmuramic acid kinase low > 70
Enterobacter sp. TBS_079 0.68 MPMX20_02645 Ribosome-binding ATPase YchF 0.45 MPMX20_01998 Anhydro-N-acetylmuramic acid kinase low > 85
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.43 Xcc-8004.4878.1 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 74
Rahnella sp. WP5 0.68 EX31_RS07380 redox-regulated ATPase YchF 0.43 EX31_RS13765 anhydro-N-acetylmuramic acid kinase low > 89
Shewanella loihica PV-4 0.68 Shew_2919 translation-associated GTPase (RefSeq) 0.45 Shew_1020 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 60
Enterobacter asburiae PDN3 0.67 EX28DRAFT_0821 GTP-binding protein YchF 0.46 EX28DRAFT_1636 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases — —
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_10875 redox-regulated ATPase YchF 0.43 CSW01_03615 anhydro-N-acetylmuramic acid kinase low > 62
Serratia liquefaciens MT49 0.67 IAI46_10240 redox-regulated ATPase YchF 0.45 IAI46_11350 anhydro-N-acetylmuramic acid kinase — —
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS17445 GTP-binding protein YchF 0.44 BPHYT_RS16645 anhydro-N-acetylmuramic acid kinase low > 109
Castellaniella sp019104865 MT123 0.66 ABCV34_RS09215 redox-regulated ATPase YchF 0.43 ABCV34_RS10575 anhydro-N-acetylmuramic acid kinase — —
Paraburkholderia graminis OAS925 0.66 ABIE53_003650 GTP-binding protein YchF 0.44 ABIE53_003499 anhydro-N-acetylmuramic acid kinase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_05705 hypothetical protein 0.44 H281DRAFT_04259 anhydro-N-acetylmuramic acid kinase low > 103
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_10565 Ribosome-binding ATPase YchF 0.42 OKGIIK_15705 anhydro-N-acetylmuramic acid kinase 0.49 5
Rhodanobacter denitrificans MT42 0.66 LRK55_RS03425 redox-regulated ATPase YchF 0.43 LRK55_RS08740 anhydro-N-acetylmuramic acid kinase low > 63
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS03675 redox-regulated ATPase YchF 0.43 LRK54_RS09210 anhydro-N-acetylmuramic acid kinase low > 59
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS27600 redox-regulated ATPase YchF 0.44 QEN71_RS26820 anhydro-N-acetylmuramic acid kinase low > 153
Ralstonia solanacearum GMI1000 0.65 RS_RS14520 redox-regulated ATPase YchF 0.45 RS_RS02460 anhydro-N-acetylmuramic acid kinase low > 80
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS02220 redox-regulated ATPase YchF 0.46 ABZR87_RS07595 anhydro-N-acetylmuramic acid kinase low > 80
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS18365 GTP-binding protein 0.43 RR42_RS02660 anhydro-N-acetylmuramic acid kinase low > 128
Acidovorax sp. GW101-3H11 0.64 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF 0.45 Ac3H11_3055 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Ralstonia solanacearum PSI07 0.64 RPSI07_RS10660 redox-regulated ATPase YchF 0.44 RPSI07_RS21585 anhydro-N-acetylmuramic acid kinase low > 81
Variovorax sp. SCN45 0.64 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.42 GFF2064 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.170) low > 127
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS06570 redox-regulated ATPase YchF 0.45 RALBFv3_RS11635 anhydro-N-acetylmuramic acid kinase low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS07055 redox-regulated ATPase YchF 0.45 UW163_RS01950 anhydro-N-acetylmuramic acid kinase — —
Variovorax sp. OAS795 0.63 ABID97_RS24750 redox-regulated ATPase YchF 0.43 ABID97_RS24970 anhydro-N-acetylmuramic acid kinase low > 91
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS20405 GTP-binding protein YchF 0.45 HSERO_RS02010 anhydro-N-acetylmuramic acid kinase low > 78
Pontibacter actiniarum KMM 6156, DSM 19842 0.59 CA264_07495 GTP-binding protein YchF 0.25 CA264_03445 anhydro-N-acetylmuramic acid kinase low > 74
Rhizobium sp. OAE497 0.58 ABIE40_RS13100 redox-regulated ATPase YchF 0.23 ABIE40_RS10025 anhydro-N-acetylmuramic acid kinase — —
Azospirillum brasilense Sp245 0.58 AZOBR_RS30645 GTP-binding protein YchF 0.25 AZOBR_RS05815 anhydro-N-acetylmuramic acid kinase — —
Rhodopseudomonas palustris CGA009 0.58 TX73_022570 redox-regulated ATPase YchF 0.27 TX73_012725 anhydro-N-acetylmuramic acid kinase low > 86
Agrobacterium fabrum C58 0.58 Atu2233 GTP-binding protein 0.24 Atu1827 hypothetical protein — —
Magnetospirillum magneticum AMB-1 0.58 AMB_RS21985 redox-regulated ATPase YchF 0.23 AMB_RS15285 anhydro-N-acetylmuramic acid kinase — —
Azospirillum sp. SherDot2 0.58 MPMX19_01641 Ribosome-binding ATPase YchF 0.23 MPMX19_01987 Anhydro-N-acetylmuramic acid kinase — —
Sinorhizobium meliloti 1021 0.57 SMc02695 GTP-dependent nucleic acid-binding protein EngD 0.22 SMc00527 anhydro-N-acetylmuramic acid kinase low > 103
Mucilaginibacter yixingensis YX-36 DSM 26809 0.57 ABZR88_RS14155 redox-regulated ATPase YchF 0.27 ABZR88_RS18185 anhydro-N-acetylmuramic acid kinase low > 71
Dinoroseobacter shibae DFL-12 0.57 Dshi_0954 GTP-binding protein YchF (RefSeq) 0.20 Dshi_2150 protein of unknown function UPF0075 (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.57 CA265_RS13275 redox-regulated ATPase YchF 0.23 CA265_RS21930 anhydro-N-acetylmuramic acid kinase low > 88
Bosea sp. OAE506 0.57 ABIE41_RS11295 redox-regulated ATPase YchF 0.22 ABIE41_RS00035 anhydro-N-acetylmuramic acid kinase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.57 Echvi_2525 GTP-binding protein YchF 0.19 Echvi_0859 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 79
Phaeobacter inhibens DSM 17395 0.56 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD 0.20 PGA1_c11350 anhydro-N-acetylmuramic acid kinase AnmK low > 62
Rhodospirillum rubrum S1H 0.56 Rru_A3748 hypothetical protein (NCBI) 0.24 Rru_A2031 Protein of unknown function UPF0075 (NCBI) low > 58
Caulobacter crescentus NA1000 Δfur 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.22 CCNA_01945 anhydro-N-acetylmuramic acid kinase low > 67
Caulobacter crescentus NA1000 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.22 CCNA_01945 anhydro-N-acetylmuramic acid kinase low > 66
Synechococcus elongatus PCC 7942 0.51 Synpcc7942_0554 ychF translation-associated GTPase 0.27 Synpcc7942_1093 anmK anhydro-N-acetylmuramic acid kinase low > 38

Not shown: 17 genomes with orthologs for PFLU_RS03610 only; 1 genomes with orthologs for PFLU_RS27305 only