| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens SBW25 | 1.0 | PFLU_RS04350 | | metalloprotease PmbA | 1.0 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.75 | 3 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS04350 | | metalloprotease PmbA | 1.00 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 109 |
| Pseudomonas simiae WCS417 | 0.98 | PS417_04295 | | peptidase PmbA | 0.93 | PS417_00085 | | 16S rRNA methyltransferase | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_07085 | | peptidase PmbA | 0.88 | AO356_11275 | | 16S rRNA methyltransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.95 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.89 | Pf6N2E2_4121 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 103 |
| Pseudomonas sp. RS175 | 0.95 | PFR28_00163 | | Metalloprotease PmbA | 0.88 | PFR28_04663 | | Ribosomal RNA small subunit methyltransferase B | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_05205 | | peptidase PmbA | 0.90 | AO353_10630 | | 16S rRNA methyltransferase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.93 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.89 | PfGW456L13_652 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.93 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.91 | Pf1N1B4_1914 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 87 |
| Pseudomonas putida KT2440 | 0.90 | PP_0942 | | regulatory protease | 0.84 | PP_0066 | | Ribosomal RNA small subunit methyltransferase B | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.83 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.83 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | low | > 86 |
| Pseudomonas sp. S08-1 | 0.81 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.72 | OH686_12525 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.77 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.80 | Psest_0021 | | ribosomal RNA small subunit methyltransferase RsmB | low | > 67 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.40 | Shewana3_0033 | | sun protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.50 | Sama_0482 | | PmbA protein (RefSeq) | 0.40 | Sama_0041 | | sun protein (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.50 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.39 | SO0030 | sun | sun protein (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.50 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.39 | Shew_3738 | | sun protein (RefSeq) | low | > 60 |
| Pectobacterium carotovorum WPP14 | 0.50 | HER17_RS20090 | | metalloprotease PmbA | 0.43 | HER17_RS02215 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 75 |
| Lysobacter sp. OAE881 | 0.50 | ABIE51_RS06805 | | metalloprotease PmbA | 0.36 | ABIE51_RS02255 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 62 |
| Rahnella sp. WP5 | 0.49 | EX31_RS12320 | | metalloprotease PmbA | 0.45 | EX31_RS15985 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 89 |
| Rhodanobacter sp. FW510-T8 | 0.49 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.37 | OKGIIK_13790 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 52 |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.44 | EX28DRAFT_0039 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_00517 | | Metalloprotease PmbA | 0.44 | MPMX20_04196 | | Ribosomal RNA small subunit methyltransferase B | low | > 85 |
| Escherichia fergusonii Becca | 0.48 | EFB2_04298 | | Metalloprotease PmbA | 0.44 | EFB2_00535 | | Ribosomal RNA small subunit methyltransferase B | low | > 86 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.45 | NOLOHH_09320 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 75 |
| Escherichia coli ECRC100 | 0.48 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.45 | OKFHMN_17520 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.48 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.31 | Xcc-8004.4741.1 | | hypothetical protein | low | > 74 |
| Escherichia coli ECRC101 | 0.48 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.45 | MCAODC_08050 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 87 |
| Escherichia coli BW25113 | 0.48 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.45 | b3289 | rsmB | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | 0.25 | 37 |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.44 | ECOLIN_RS18875 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.45 | OHPLBJKB_00415 | | Ribosomal RNA small subunit methyltransferase B | 0.45 | 40 |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.45 | JDDGAC_21150 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 86 |
| Escherichia coli BL21 | 0.48 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.45 | ECD_03139 | | 16S rRNA m(5)C967 methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.45 | HEPCGN_16350 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 87 |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.45 | NIAGMN_15290 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | — | — |
| Rhodanobacter denitrificans MT42 | 0.48 | LRK55_RS03125 | | metalloprotease PmbA | 0.34 | LRK55_RS09765 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 63 |
| Dechlorosoma suillum PS | 0.48 | Dsui_1234 | | putative Zn-dependent protease-like protein | 0.34 | Dsui_0812 | | ribosomal RNA small subunit methyltransferase RsmB | low | > 51 |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.45 | KEDOAH_10620 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | — | — |
| Escherichia coli ECRC62 | 0.48 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.45 | BNILDI_02200 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 75 |
| Rhodanobacter denitrificans FW104-10B01 | 0.48 | LRK54_RS03375 | | metalloprotease PmbA | 0.34 | LRK54_RS10125 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 59 |
| Klebsiella michiganensis M5al | 0.48 | BWI76_RS02850 | | metalloprotease PmbA | 0.44 | BWI76_RS25680 | | 16S rRNA m5C967 methyltransferase | low | > 92 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_12845 | | metalloprotease PmbA | 0.46 | CSW01_00225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_00230 | | peptidase PmbA | 0.37 | MIT1002_00018 | | Ribosomal RNA small subunit methyltransferase B | low | > 70 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.44 | GFF2390 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 | low | > 78 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_22575 | | metalloprotease PmbA | 0.46 | IAI46_23275 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.47 | ABZR86_RS21700 | | metalloprotease PmbA | 0.37 | ABZR86_RS13890 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.44 | LU632_RS22480 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 74 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS01415 | | metalloprotease PmbA | 0.43 | HGI48_RS19225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 71 |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS01500 | | metalloprotease PmbA | 0.43 | DDA3937_RS19135 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 74 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS01480 | | metalloprotease PmbA | 0.43 | DZA65_RS20350 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 75 |
| Pantoea sp. MT58 | 0.46 | IAI47_02765 | | metalloprotease PmbA | 0.46 | IAI47_02280 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 76 |
| Variovorax sp. SCN45 | 0.46 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.27 | GFF5878 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) | low | > 127 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS20695 | | metalloprotease PmbA | 0.26 | ABID97_RS05360 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 91 |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.30 | RALBFv3_RS09790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 76 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS15845 | | metalloprotease PmbA | 0.30 | UW163_RS03790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | — | — |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS09660 | | metalloprotease PmbA | 0.33 | ABZR87_RS04950 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04270 | | metalloprotease PmbA | 0.28 | QEN71_RS00175 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.28 | H281DRAFT_02237 | | 16S rRNA (cytosine967-C5)-methyltransferase | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.44 | ABIE53_003116 | | PmbA protein | 0.27 | ABIE53_000392 | | 16S rRNA (cytosine967-C5)-methyltransferase | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS14750 | | peptidase PMbA | 0.26 | RR42_RS20450 | | 16S rRNA methyltransferase | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14705 | | peptidase C69 | 0.28 | BPHYT_RS01475 | | 16S rRNA methyltransferase | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS19505 | | metalloprotease PmbA | 0.32 | RPSI07_RS23575 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.27 | Ac3H11_4461 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS10610 | | metalloprotease PmbA | 0.33 | ABCV34_RS14225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 48 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS04700 | | metalloprotease PmbA | 0.30 | RS_RS00375 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.40 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.30 | GFF1789 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | low | > 90 |
| Kangiella aquimarina DSM 16071 | 0.40 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.38 | B158DRAFT_0396 | | ribosomal RNA small subunit methyltransferase RsmB | low | > 40 |
| Azospirillum brasilense Sp245 | 0.29 | AZOBR_RS11930 | | modulator protein | 0.21 | AZOBR_RS00235 | | MFS transporter | low | > 97 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_01886 | | Metalloprotease PmbA | 0.19 | MPMX19_02327 | | Ribosomal RNA small subunit methyltransferase B | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.19 | Dshi_3033 | | Fmu (Sun) domain protein (RefSeq) | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.27 | TX73_005930 | | TldD/PmbA family protein | 0.20 | TX73_000155 | | transcription antitermination factor NusB | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.26 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.16 | Ga0059261_2239 | | tRNA and rRNA cytosine-C5-methylases | low | > 68 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c33480 | | protein PmbA | 0.18 | PGA1_c32880 | | putative ribosomal RNA small subunit methyltransferase B | — | — |
| Sinorhizobium meliloti 1021 | 0.25 | SMc00897 | | PMBA protein | 0.20 | SMc04090 | | sun protein | low | > 103 |
| Magnetospirillum magneticum AMB-1 | 0.25 | AMB_RS22120 | | TldD/PmbA family protein | 0.22 | AMB_RS00745 | | MFS transporter | low | > 64 |
| Agrobacterium fabrum C58 | 0.25 | Atu0693 | | PmbA/TldD related protein | 0.19 | Atu2825 | | Sun protein | low | > 89 |
| Rhizobium sp. OAE497 | 0.24 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.20 | ABIE40_RS19140 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | low | > 107 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_00311 | | Zn-dependent protease family protein | 0.21 | CCNA_00101 | | 16S rRNA m5C methyltransferase RsmB | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_00311 | | Zn-dependent protease family protein | 0.21 | CCNA_00101 | | 16S rRNA m5C methyltransferase RsmB | low | > 67 |
| Rhodospirillum rubrum S1H | 0.23 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.19 | Rru_A3660 | | tRNA and rRNA cytosine-C5-methylase (NCBI) | low | > 58 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.23 | A4249_RS09195 | | TldD/PmbA family protein | 0.18 | A4249_RS13165 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | low | > 48 |
| Synechococcus elongatus PCC 7942 | 0.06 | Synpcc7942_1289 | pmbA | putative modulator of DNA gyrase | 0.24 | Synpcc7942_0962 | sun | sun protein | low | > 38 |
Not shown: 4 genomes with orthologs for PFLU_RS04350 only; 5 genomes with orthologs for PFLU_RS00080 only