Conservation of cofitness between IAI47_06245 and IAI47_16080 in Pantoea sp. MT58

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 1.0 IAI47_16080 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 0.37 9
Escherichia coli ECRC101 0.86 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.75 MCAODC_01345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Escherichia coli Nissle 1917 0.86 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.75 ECOLIN_RS00290 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 52
Escherichia coli ECRC98 0.86 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.75 JDDGAC_14425 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Escherichia coli ECOR38 0.86 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.75 HEPCGN_08820 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 85
Escherichia coli ECRC101 0.86 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.75 OKFHMN_10830 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Escherichia coli ECRC102 0.86 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.75 NIAGMN_08680 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Escherichia coli ECRC62 0.86 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.75 BNILDI_08430 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Escherichia coli ECRC99 0.86 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.75 KEDOAH_17325 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Escherichia fergusonii Becca 0.85 EFB2_01540 tRNA pseudouridine synthase A 0.75 EFB2_03991 4-hydroxythreonine-4-phosphate dehydrogenase low > 86
Escherichia coli BL21 0.85 ECD_02243 tRNA pseudouridine(38-40) synthase 0.75 ECD_00056 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent — —
Escherichia coli ECOR27 0.85 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.75 NOLOHH_03175 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.75 OHPLBJKB_03604 4-hydroxythreonine-4-phosphate dehydrogenase low > 73
Escherichia coli BW25113 0.85 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.75 b0052 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) 0.33 73
Enterobacter sp. TBS_079 0.84 MPMX20_03253 tRNA pseudouridine synthase A 0.72 MPMX20_00748 4-hydroxythreonine-4-phosphate dehydrogenase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.74 GFF189 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) low > 78
Enterobacter asburiae PDN3 0.84 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.72 EX28DRAFT_3646 4-hydroxythreonine-4-phosphate dehydrogenase low > 76
Klebsiella michiganensis M5al 0.83 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.71 BWI76_RS04525 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 92
Pectobacterium carotovorum WPP14 0.81 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.76 HER17_RS02965 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 75
Serratia liquefaciens MT49 0.81 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.76 IAI46_03250 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 86
Erwinia tracheiphila SCR3 0.81 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.80 LU632_RS02725 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Dickeya dianthicola ME23 0.79 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.76 DZA65_RS19335 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 75
Dickeya dadantii 3937 0.79 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.77 DDA3937_RS18260 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 74
Dickeya dianthicola 67-19 0.78 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.76 HGI48_RS18195 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 71
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.62 CSW01_02330 4-hydroxythreonine-4-phosphate dehydrogenase — —
Rahnella sp. WP5 0.71 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.74 EX31_RS03775 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 89
Shewanella sp. ANA-3 0.69 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.63 Shewana3_3208 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) — —
Shewanella loihica PV-4 0.67 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.65 Shew_0880 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) — —
Shewanella amazonensis SB2B 0.66 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.64 Sama_2818 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) — —
Alteromonas macleodii MIT1002 0.62 MIT1002_02529 tRNA pseudouridine synthase A 0.62 MIT1002_00782 4-hydroxythreonine-4-phosphate dehydrogenase — —
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_1483 pseudouridylate synthase I 0.55 B158DRAFT_0789 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas sp. S08-1 0.56 OH686_04450 tRNA pseudouridine(38-40) synthase 0.56 OH686_15045 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Pseudomonas putida KT2440 0.54 PP_1994 tRNA pseudouridine (38-40)synthase 0.56 PP_0402 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.55 PfGW456L13_1201 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.55 Pf1N1B4_2529 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) — —
Pseudomonas fluorescens SBW25-INTG 0.54 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.56 PFLU_RS27460 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Pseudomonas fluorescens SBW25 0.54 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.56 PFLU_RS27460 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Pseudomonas simiae WCS417 0.54 PS417_18565 pseudouridine synthase 0.56 PS417_25805 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_21435 pseudouridine synthase 0.56 AO356_14340 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.55 Pf6N2E2_4806 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) — —
Pseudomonas sp. RS175 0.53 PFR28_02817 tRNA pseudouridine synthase A 0.56 PFR28_04063 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1662 tRNA pseudouridine synthase 0.55 Psyr_4626 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1662 tRNA pseudouridine synthase 0.55 Psyr_4626 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_20660 pseudouridine synthase 0.55 AO353_07310 4-hydroxythreonine-4-phosphate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.51 Psest_2585 pseudouridylate synthase I 0.57 Psest_3667 4-hydroxythreonine-4-phosphate dehydrogenase — —
Dechlorosoma suillum PS 0.50 Dsui_3194 pseudouridylate synthase I 0.53 Dsui_1585 4-hydroxythreonine-4-phosphate dehydrogenase — —
Marinobacter adhaerens HP15 0.49 HP15_1829 tRNA pseudouridine synthase A 0.57 HP15_3279 4-hydroxythreonine-4-phosphate dehydrogenase — —
Acinetobacter radioresistens SK82 0.48 MPMX26_00352 tRNA pseudouridine synthase A 0.49 MPMX26_00595 4-hydroxythreonine-4-phosphate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS33885 tRNA pseudouridine synthase A 0.46 BPHYT_RS03300 4-hydroxythreonine-4-phosphate dehydrogenase — —
Lysobacter sp. OAE881 0.46 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.46 ABIE51_RS05390 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.45 H281DRAFT_04639 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) low > 103
Paraburkholderia graminis OAS925 0.45 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.46 ABIE53_000799 4-hydroxythreonine-4-phosphate dehydrogenase 0.32 96
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS16485 tRNA pseudouridine synthase A 0.46 HSERO_RS03535 4-hydroxythreonine-4-phosphate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.44 QEN71_RS02125 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 153
Rhodanobacter denitrificans MT42 0.44 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.48 LRK55_RS12045 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.48 LRK54_RS12310 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.41 Xcc-8004.4270.1 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) low > 74
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.48 OKGIIK_11620 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.47 ABZR86_RS11265 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.46 RPSI07_RS21465 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.46 RALBFv3_RS11750 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Ralstonia solanacearum UW163 0.41 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.46 UW163_RS01835 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Ralstonia solanacearum GMI1000 0.41 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.46 RS_RS02575 4-hydroxythreonine-4-phosphate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.46 ABZR87_RS07705 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 80
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS14370 tRNA pseudouridine synthase A 0.44 RR42_RS02780 4-hydroxythreonine-4-phosphate dehydrogenase — —
Azospirillum brasilense Sp245 0.31 AZOBR_RS03570 tRNA pseudouridine synthase A 0.33 AZOBR_RS16370 4-hydroxythreonine-4-phosphate dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.31 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA 0.34 AMB_RS18815 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_2207 truA tRNA pseudouridine synthase A 0.28 Synpcc7942_0804 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase — —
Sinorhizobium meliloti 1021 0.29 SMc01099 tRNA pseudouridine synthase A 0.34 SMc00580 4-hydroxythreonine-4-phosphate dehydrogenase low > 103
Rhizobium sp. OAE497 0.28 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA 0.33 ABIE40_RS06395 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c05650 tRNA pseudouridine synthase A 0.31 PGA1_c19850 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Agrobacterium fabrum C58 0.28 Atu0368 tRNA pseudouridine synthase I 0.33 Atu1104 pyridoxal phosphate biosynthesis protein — —
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.29 Ga0059261_0878 4-hydroxythreonine-4-phosphate dehydrogenase — —
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA 0.27 HMPREF1058_RS17035 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 67
Dinoroseobacter shibae DFL-12 0.26 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) 0.32 Dshi_1186 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) — —
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA 0.27 ABI39_RS12955 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 72
Bacteroides ovatus ATCC 8483 0.26 BACOVA_05075 tRNA pseudouridine synthase A 0.27 BACOVA_05206 4-hydroxythreonine-4-phosphate dehydrogenase — —
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA 0.28 HMPREF1181_RS05765 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Parabacteroides merdae CL09T00C40 0.24 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA 0.23 HMPREF1078_RS14540 4-hydroxythreonine-4-phosphate dehydrogenase PdxA low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.32 CA265_RS18320 4-hydroxythreonine-4-phosphate dehydrogenase PdxA — —
Desulfovibrio vulgaris Miyazaki F 0.23 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) 0.29 DvMF_0837 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq) low > 51

Not shown: 21 genomes with orthologs for IAI47_06245 only; 1 genomes with orthologs for IAI47_16080 only