Conservation of cofitness between HER17_RS14920 and HER17_RS11775 in Pectobacterium carotovorum WPP14

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS14920 ADP-forming succinate--CoA ligase subunit beta 1.0 HER17_RS11775 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.62 4
Dickeya dadantii 3937 0.93 DDA3937_RS06470 ADP-forming succinate--CoA ligase subunit beta 0.91 DDA3937_RS10140 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Dickeya dianthicola ME23 0.92 DZA65_RS06855 ADP-forming succinate--CoA ligase subunit beta 0.92 DZA65_RS10585 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS06510 ADP-forming succinate--CoA ligase subunit beta 0.92 HGI48_RS10170 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 71
Serratia liquefaciens MT49 0.91 IAI46_06285 ADP-forming succinate--CoA ligase subunit beta 0.90 IAI46_14570 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 86
Pantoea sp. MT58 0.91 IAI47_13735 ADP-forming succinate--CoA ligase subunit beta 0.86 IAI47_08500 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Erwinia tracheiphila SCR3 0.90 LU632_RS16085 sucC ADP-forming succinate--CoA ligase subunit beta 0.81 LU632_RS13355 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Klebsiella michiganensis M5al 0.90 BWI76_RS08425 succinyl-CoA ligase subunit beta 0.82 BWI76_RS18095 ketohydroxyglutarate aldolase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_02989 Succinate--CoA ligase [ADP-forming] subunit beta 0.87 OHPLBJKB_01879 KHG/KDPG aldolase low > 73
Escherichia fergusonii Becca 0.90 EFB2_03378 Succinate--CoA ligase [ADP-forming] subunit beta 0.87 EFB2_02093 KHG/KDPG aldolase low > 86
Escherichia coli ECRC101 0.90 MCAODC_26135 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 MCAODC_19060 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 87
Escherichia coli ECRC102 0.90 NIAGMN_04965 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 NIAGMN_01715 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Escherichia coli ECOR27 0.90 NOLOHH_23305 sucC ADP-forming succinate--CoA ligase subunit beta 0.86 NOLOHH_16855 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 75
Escherichia coli ECRC99 0.90 KEDOAH_21050 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 KEDOAH_01760 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Escherichia coli BL21 0.90 ECD_00687 succinyl-CoA synthetase, beta subunit 0.87 ECD_01821 KHG/KDPG aldolase; 2-dehydro-3-deoxy-phosphogluconate/4-hydroxy-2- oxoglutarate aldolase
Escherichia coli ECOR38 0.90 HEPCGN_01315 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 HEPCGN_04750 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 87
Escherichia coli ECRC98 0.90 JDDGAC_10570 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 JDDGAC_00920 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 86
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03880 ADP-forming succinate--CoA ligase subunit beta 0.87 ECOLIN_RS10305 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Escherichia coli ECRC100 0.90 OKFHMN_06915 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 OKFHMN_26345 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 80
Escherichia coli BW25113 0.90 b0728 sucC succinyl-CoA synthetase subunit beta (NCBI) 0.87 b1850 eda keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) low > 76
Escherichia coli ECRC62 0.90 BNILDI_21300 sucC ADP-forming succinate--CoA ligase subunit beta 0.87 BNILDI_15650 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 75
Rahnella sp. WP5 0.89 EX31_RS23450 ADP-forming succinate--CoA ligase subunit beta 0.88 EX31_RS10625 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF4641 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.90 GFF1629 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_01356 Succinate--CoA ligase [ADP-forming] subunit beta 0.89 MPMX20_02755 KHG/KDPG aldolase low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2264 succinyl-CoA synthetase, beta subunit 0.89 EX28DRAFT_0706 Entner-Doudoroff aldolase low > 76
Pseudomonas sp. S08-1 0.78 OH686_01955 Succinyl-CoA ligase [ADP-forming] beta chain 0.47 OH686_02425 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase
Pseudomonas fluorescens SBW25 0.77 PFLU_RS08970 ADP-forming succinate--CoA ligase subunit beta 0.46 PFLU_RS23715 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS08970 ADP-forming succinate--CoA ligase subunit beta 0.46 PFLU_RS23715 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_01820 succinyl-CoA synthetase subunit beta 0.46 AO353_03350 keto-deoxy-phosphogluconate aldolase
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_4266 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.46 PfGW456L13_1903 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Pseudomonas simiae WCS417 0.77 PS417_08910 succinyl-CoA synthetase subunit beta 0.46 PS417_22100 keto-deoxy-phosphogluconate aldolase
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_5858 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.46 Pf6N2E2_2883 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Pseudomonas sp. RS175 0.77 PFR28_03093 Succinate--CoA ligase [ADP-forming] subunit beta 0.47 PFR28_00575 2-dehydro-3-deoxy-phosphogluconate aldolase
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_3684 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.46 Pf1N1B4_587 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Shewanella amazonensis SB2B 0.77 Sama_1429 sucC succinyl-CoA synthetase subunit beta (RefSeq) 0.68 Sama_1809 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq)
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_19710 succinyl-CoA synthetase subunit beta 0.46 AO356_05150 keto-deoxy-phosphogluconate aldolase
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_10420 succinyl-CoA ligase subunit beta 0.41 CSW01_01465 ketohydroxyglutarate aldolase low > 62
Marinobacter adhaerens HP15 0.76 HP15_1524 succinyl-CoA synthetase, beta subunit 0.50 HP15_2177 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_2012 succinyl-CoA synthetase (ADP-forming) beta subunit 0.46 Psyr_1122 2-keto-3-deoxy-phosphogluconate aldolase
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_2012 succinyl-CoA synthetase (ADP-forming) beta subunit 0.46 Psyr_1122 2-keto-3-deoxy-phosphogluconate aldolase
Shewanella sp. ANA-3 0.76 Shewana3_1712 sucC succinyl-CoA synthetase subunit beta (RefSeq) 0.66 Shewana3_2148 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq)
Alteromonas macleodii MIT1002 0.75 MIT1002_01950 Succinyl-CoA ligase [ADP-forming] subunit beta 0.69 MIT1002_02403 KHG/KDPG aldolase
Shewanella oneidensis MR-1 0.75 SO1932 sucC succinyl-CoA synthase, beta subunit (NCBI ptt file) 0.66 SO2486 eda 2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (NCBI ptt file)
Shewanella loihica PV-4 0.75 Shew_1657 sucC succinyl-CoA synthetase subunit beta (RefSeq) 0.66 Shew_2045 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq)
Pseudomonas putida KT2440 0.74 PP_4186 succinyl-CoA synthetase, beta subunit glutaryl-CoA synthetase, beta subunit 0.49 PP_1024 KHG/KDPG aldolase
Pseudomonas stutzeri RCH2 0.74 Psest_2491 succinyl-CoA synthetase, beta subunit 0.48 Psest_0854 Entner-Doudoroff aldolase
Lysobacter sp. OAE881 0.59 ABIE51_RS04860 ADP-forming succinate--CoA ligase subunit beta 0.43 ABIE51_RS01605 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS11025 ADP-forming succinate--CoA ligase subunit beta 0.48 ABZR86_RS14685 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_01760 sucC ADP-forming succinate--CoA ligase subunit beta 0.47 OKGIIK_14375 eda 2-keto-3-deoxy-6-phosphogluconate aldolase
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.1355.1 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.41 Xcc-8004.2446.1 hypothetical protein
Rhodanobacter denitrificans FW104-10B01 0.57 LRK54_RS04985 ADP-forming succinate--CoA ligase subunit beta 0.49 LRK54_RS07885 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Rhodanobacter denitrificans MT42 0.57 LRK55_RS04765 ADP-forming succinate--CoA ligase subunit beta 0.49 LRK55_RS07615 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Dinoroseobacter shibae DFL-12 0.56 Dshi_2878 succinyl-CoA synthetase, beta subunit (RefSeq) 0.42 Dshi_1768 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq)
Azospirillum sp. SherDot2 0.55 MPMX19_00106 Succinate--CoA ligase [ADP-forming] subunit beta 0.18 MPMX19_06076 KHG/KDPG aldolase
Azospirillum brasilense Sp245 0.55 AZOBR_RS14065 malate--CoA ligase subunit beta 0.39 AZOBR_RS29850 ketohydroxyglutarate aldolase
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS20405 ADP-forming succinate--CoA ligase subunit beta 0.45 QEN71_RS26915 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Caulobacter crescentus NA1000 0.54 CCNA_00340 succinyl-CoA synthetase beta chain 0.21 CCNA_01562 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS31375 succinyl-CoA synthetase subunit beta 0.46 RR42_RS28865 2-dehydro-3-deoxyphosphogluconate aldolase
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_00340 succinyl-CoA synthetase beta chain 0.21 CCNA_01562 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate aldolase
Phaeobacter inhibens DSM 17395 0.53 PGA1_c03630 succinyl-CoA ligase [ADP-forming] subunit beta 0.47 PGA1_c28010 KHG/KDPG aldolase
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_2278 succinyl-CoA synthetase, beta subunit 0.50 Ga0059261_0356 Entner-Doudoroff aldolase
Bosea sp. OAE506 0.52 ABIE41_RS08965 ADP-forming succinate--CoA ligase subunit beta 0.45 ABIE41_RS23505 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04205 succinyl-CoA synthetase (ADP-forming) beta subunit 0.44 H281DRAFT_04277 2-keto-3-deoxy-phosphogluconate aldolase
Sinorhizobium meliloti 1021 0.49 SMc02480 succinyl-CoA synthetase subunit beta 0.47 SMc03153 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
Acidovorax sp. GW101-3H11 0.49 Ac3H11_1252 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.47 Ac3H11_2083 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS16345 succinyl-CoA ligase [ADP-forming] subunit beta 0.44 BPHYT_RS16730 2-dehydro-3-deoxyphosphogluconate aldolase
Variovorax sp. OAS795 0.49 ABID97_RS24475 ADP-forming succinate--CoA ligase subunit beta 0.50 ABID97_RS21295 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Paraburkholderia graminis OAS925 0.49 ABIE53_003445 succinyl-CoA synthetase beta subunit 0.44 ABIE53_003516 2-dehydro-3-deoxyphosphogluconate aldolase/(4S)-4-hydroxy-2-oxoglutarate aldolase
Ralstonia solanacearum UW163 0.48 UW163_RS01610 ADP-forming succinate--CoA ligase subunit beta 0.48 UW163_RS20970 ketohydroxyglutarate aldolase
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS12025 ADP-forming succinate--CoA ligase subunit beta 0.48 RALBFv3_RS18160 ketohydroxyglutarate aldolase
Ralstonia solanacearum GMI1000 0.48 RS_RS02775 succinyl-CoA ligase subunit beta 0.48 RS_RS22875 ketohydroxyglutarate aldolase
Variovorax sp. SCN45 0.48 GFF5405 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.48 GFF6512 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2504 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.46 GFF5496 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS14420 ADP-forming succinate--CoA ligase subunit beta 0.22 A4249_RS10775 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS07980 ADP-forming succinate--CoA ligase subunit beta 0.47 ABZR87_RS19090 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Ralstonia solanacearum PSI07 0.48 RPSI07_RS21245 ADP-forming succinate--CoA ligase subunit beta 0.51 RPSI07_RS05475 ketohydroxyglutarate aldolase
Rhizobium sp. OAE497 0.48 ABIE40_RS17995 ADP-forming succinate--CoA ligase subunit beta 0.44 ABIE40_RS16720 2-dehydro-3-deoxy-phosphogluconate aldolase
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS03280 malate--CoA ligase subunit beta 0.54 HSERO_RS05525 ketohydroxyglutarate aldolase
Agrobacterium fabrum C58 0.47 Atu2638 succinyl-CoA synthetase beta chain 0.46 Atu4494 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
Castellaniella sp019104865 MT123 0.47 ABCV34_RS04435 ADP-forming succinate--CoA ligase subunit beta 0.45 ABCV34_RS08610 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Bacteroides thetaiotaomicron VPI-5482 0.44 BT0788 succinyl-CoA synthetase beta chain (NCBI ptt file) 0.21 BT0489 putative gluconate aldolase (NCBI ptt file)
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_10470 succinate--CoA ligase subunit beta 0.17 CA264_14015 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
Bacteroides ovatus ATCC 8483 0.44 BACOVA_02527 succinate-CoA ligase, beta subunit 0.21 BACOVA_03829 KDPG and KHG aldolase low > 94
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_2908 succinyl-CoA synthetase, beta subunit 0.19 Echvi_3630 Entner-Doudoroff aldolase low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS04300 succinate--CoA ligase subunit beta 0.18 CA265_RS19860 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data)
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS07630 ADP-forming succinate--CoA ligase subunit beta 0.18 ABZR88_RS16205 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase

Not shown: 10 genomes with orthologs for HER17_RS14920 only; 4 genomes with orthologs for HER17_RS11775 only