Conservation of cofitness between HEPCGN_08095 and HEPCGN_19565 in Escherichia coli ECOR38

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_08095 rnhB ribonuclease HII 1.0 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.50 20
Escherichia coli ECRC101 1.00 MCAODC_00655 rnhB ribonuclease HII 0.99 MCAODC_10470 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC102 1.00 NIAGMN_07990 rnhB ribonuclease HII 0.99 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC98 1.00 JDDGAC_13735 rnhB ribonuclease HII 0.99 JDDGAC_23610 lysA diaminopimelate decarboxylase low > 86
Escherichia coli ECRC100 1.00 OKFHMN_10140 rnhB ribonuclease HII 0.99 OKFHMN_19945 lysA diaminopimelate decarboxylase low > 80
Escherichia coli ECRC99 1.00 KEDOAH_18015 rnhB ribonuclease HII 1.00 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia fergusonii Becca 1.00 EFB2_03861 Ribonuclease HII 1.00 EFB2_01045 Diaminopimelate decarboxylase low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS00995 ribonuclease HII 1.00 ECOLIN_RS15930 diaminopimelate decarboxylase — —
Escherichia coli ECOR27 0.99 NOLOHH_02485 rnhB ribonuclease HII 1.00 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03480 Ribonuclease HII 1.00 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli BW25113 0.99 b0183 rnhB ribonuclease HII (NCBI) 1.00 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) low > 76
Escherichia coli ECRC62 0.99 BNILDI_09185 rnhB ribonuclease HII 0.99 BNILDI_10310 lysA diaminopimelate decarboxylase low > 75
Escherichia coli BL21 0.98 ECD_00181 ribonuclease HII 1.00 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF39 Ribonuclease HII (EC 3.1.26.4) 0.89 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Enterobacter sp. TBS_079 0.92 MPMX20_00867 Ribonuclease HII 0.90 MPMX20_03705 Diaminopimelate decarboxylase low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3771 RNase HII (EC 3.1.26.4) 0.88 EX28DRAFT_2916 diaminopimelate decarboxylase low > 76
Klebsiella michiganensis M5al 0.87 BWI76_RS05285 ribonuclease HII 0.88 BWI76_RS23360 diaminopimelate decarboxylase — —
Serratia liquefaciens MT49 0.83 IAI46_20190 ribonuclease HII 0.79 IAI46_20520 diaminopimelate decarboxylase low > 86
Pantoea sp. MT58 0.81 IAI47_15460 ribonuclease HII 0.75 IAI47_03860 diaminopimelate decarboxylase low > 76
Dickeya dadantii 3937 0.80 DDA3937_RS05185 ribonuclease HII 0.75 DDA3937_RS17425 diaminopimelate decarboxylase low > 74
Pectobacterium carotovorum WPP14 0.80 HER17_RS16265 ribonuclease HII 0.77 HER17_RS03710 diaminopimelate decarboxylase low > 75
Rahnella sp. WP5 0.79 EX31_RS12965 ribonuclease HII 0.75 EX31_RS13275 diaminopimelate decarboxylase low > 89
Dickeya dianthicola ME23 0.79 DZA65_RS05525 ribonuclease HII 0.75 DZA65_RS18550 diaminopimelate decarboxylase — —
Dickeya dianthicola 67-19 0.79 HGI48_RS05185 ribonuclease HII 0.74 HGI48_RS17485 diaminopimelate decarboxylase — —
Erwinia tracheiphila SCR3 0.76 LU632_RS19895 rnhB ribonuclease HII 0.76 LU632_RS06040 lysA diaminopimelate decarboxylase — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_11440 ribonuclease HII 0.19 CSW01_00635 diaminopimelate decarboxylase low > 62
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS06345 ribonuclease HII 0.21 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.67 PFLU_RS06345 ribonuclease HII 0.21 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_16530 ribonuclease HII 0.22 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas simiae WCS417 0.66 PS417_06280 ribonuclease HII 0.21 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_4694 Ribonuclease HII (EC 3.1.26.4) 0.21 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_05970 ribonuclease HII 0.21 AO356_12740 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_3098 Ribonuclease HII (EC 3.1.26.4) 0.21 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_3055 Ribonuclease HII (EC 3.1.26.4) 0.21 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas putida KT2440 0.65 PP_1605 Ribonuclease HII 0.57 PP_2077 diaminopimelate decarboxylase low > 96
Pseudomonas sp. RS175 0.65 PFR28_00410 Ribonuclease HII 0.21 PFR28_04375 Diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_1357 RNase HII 0.21 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_1357 RNase HII 0.21 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas stutzeri RCH2 0.63 Psest_2828 Ribonuclease HII 0.20 Psest_3764 diaminopimelate decarboxylase — —
Pseudomonas sp. S08-1 0.63 OH686_06415 Ribonuclease HII 0.20 OH686_13800 diaminopimelate decarboxylase — —
Shewanella sp. ANA-3 0.60 Shewana3_2801 rnhB ribonuclease HII (RefSeq) 0.19 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.53 38
Dechlorosoma suillum PS 0.60 Dsui_2680 ribonuclease HII 0.21 Dsui_1182 diaminopimelate decarboxylase — —
Marinobacter adhaerens HP15 0.60 HP15_1180 ribonuclease HII 0.19 HP15_247 diaminopimelate decarboxylase — —
Alteromonas macleodii MIT1002 0.60 MIT1002_01017 Ribonuclease HII 0.16 MIT1002_00160 Diaminopimelate decarboxylase low > 70
Shewanella oneidensis MR-1 0.59 SO1643 rnhB ribonuclease HII (NCBI ptt file) 0.19 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.59 Sama_1153 rnhB ribonuclease HII (RefSeq) 0.20 Sama_3250 diaminopimelate decarboxylase (RefSeq) low > 62
Shewanella loihica PV-4 0.59 Shew_2621 ribonuclease H (RefSeq) 0.19 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.34 24
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS10945 ribonuclease HII 0.19 HSERO_RS00950 diaminopimelate decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS11805 ribonuclease HII 0.21 RR42_RS19050 diaminopimelate decarboxylase — —
Acinetobacter radioresistens SK82 0.53 MPMX26_01083 Ribonuclease HII 0.19 MPMX26_02232 Diaminopimelate decarboxylase low > 36
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS11895 ribonuclease HII 0.20 ABZR87_RS02640 diaminopimelate decarboxylase low > 80
Castellaniella sp019104865 MT123 0.52 ABCV34_RS04040 ribonuclease HII 0.18 ABCV34_RS12685 diaminopimelate decarboxylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4901 Ribonuclease HII (EC 3.1.26.4) 0.20 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Acidovorax sp. GW101-3H11 0.51 Ac3H11_432 Ribonuclease HII (EC 3.1.26.4) 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_10205 rnhB ribonuclease HII 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Variovorax sp. SCN45 0.49 GFF379 Ribonuclease HII (EC 3.1.26.4) 0.19 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS21650 ribonuclease HII 0.24 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_00383 ribonuclease HII 0.24 CCNA_02296 diaminopimelate decarboxylase — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS03320 ribonuclease HII 0.25 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS03070 ribonuclease HII 0.25 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Caulobacter crescentus NA1000 0.45 CCNA_00383 ribonuclease HII 0.24 CCNA_02296 diaminopimelate decarboxylase — —
Phaeobacter inhibens DSM 17395 0.43 PGA1_c33580 ribonuclease HII 0.22 PGA1_c03470 diaminopimelate decarboxylase LysA — —
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_1962 RNase HII (EC 3.1.26.4) 0.22 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS09510 ribonuclease HII 0.24 A4249_RS12545 diaminopimelate decarboxylase low > 48
Bacteroides thetaiotaomicron VPI-5482 0.42 BT3412 ribonuclease HII (NCBI ptt file) 0.18 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_00195 ribonuclease HII 0.18 CA264_02390 diaminopimelate decarboxylase low > 74
Bacteroides ovatus ATCC 8483 0.41 BACOVA_01892 ribonuclease HII 0.17 BACOVA_00215 diaminopimelate decarboxylase low > 94
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS11835 ribonuclease HII 0.18 HMPREF1078_RS13545 diaminopimelate decarboxylase low > 61
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS02630 ribonuclease HII 0.18 HMPREF1181_RS11050 diaminopimelate decarboxylase low > 56
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS12265 ribonuclease HII 0.17 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Lysobacter sp. OAE881 0.40 ABIE51_RS06875 ribonuclease HII 0.26 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS23950 ribonuclease HII 0.18 CA265_RS09650 diaminopimelate decarboxylase low > 88
Agrobacterium fabrum C58 0.40 Atu0720 ribonuclease HII 0.20 Atu3601 diaminopimelate decarboxylase — —
Magnetospirillum magneticum AMB-1 0.40 AMB_RS20190 ribonuclease HII 0.21 AMB_RS22725 diaminopimelate decarboxylase — —
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS04525 ribonuclease HII 0.17 ABI39_RS19950 diaminopimelate decarboxylase low > 72
Azospirillum sp. SherDot2 0.39 MPMX19_05650 Ribonuclease HII 0.22 MPMX19_05819 Diaminopimelate decarboxylase — —
Rhodospirillum rubrum S1H 0.38 Rru_A3209 Ribonuclease H (NCBI) 0.22 Rru_A0396 Diaminopimelate decarboxylase (NCBI) — —
Sinorhizobium meliloti 1021 0.38 SMc00867 ribonuclease HII 0.19 SMc00723 diaminopimelate DAP decarboxylase — —
Desulfovibrio vulgaris Hildenborough JW710 0.37 DVU0834 rnhB ribonuclease HII (TIGR) 0.26 DVU2566 lysA-2 diaminopimelate decarboxylase (TIGR) low > 55
Dinoroseobacter shibae DFL-12 0.37 Dshi_0023 Ribonuclease H (RefSeq) 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) — —
Azospirillum brasilense Sp245 0.37 AZOBR_RS20300 ribonuclease HII 0.20 AZOBR_RS16945 diaminopimelate decarboxylase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_2417 Ribonuclease HII 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.37 ABZR88_RS22230 ribonuclease HII 0.16 ABZR88_RS10180 diaminopimelate decarboxylase — —
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_0879 rhnB RNase HII 0.15 Synpcc7942_0262 lysA diaminopimelate decarboxylase — —
Bosea sp. OAE506 0.34 ABIE41_RS22855 ribonuclease HII 0.23 ABIE41_RS08740 diaminopimelate decarboxylase — —

Not shown: 4 genomes with orthologs for HEPCGN_08095 only; 15 genomes with orthologs for HEPCGN_19565 only