| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 1.0 | GFF630 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.96 | 2 |
| Escherichia coli ECRC62 | 0.87 | BNILDI_02165 | aroE | shikimate dehydrogenase | 0.91 | BNILDI_02615 | aroB | 3-dehydroquinate synthase | 0.93 | 14 |
| Escherichia coli ECOR38 | 0.87 | HEPCGN_16385 | aroE | shikimate dehydrogenase | 0.91 | HEPCGN_15935 | aroB | 3-dehydroquinate synthase | 0.92 | 1 |
| Escherichia coli ECOR27 | 0.87 | NOLOHH_09355 | aroE | shikimate dehydrogenase | 0.91 | NOLOHH_08905 | aroB | 3-dehydroquinate synthase | 0.96 | 1 |
| Escherichia coli BW25113 | 0.87 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | 0.91 | b3389 | aroB | 3-dehydroquinate synthase (NCBI) | 0.99 | 1 |
| Escherichia coli BL21 | 0.87 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | 0.91 | ECD_03241 | | 3-dehydroquinate synthase | 0.87 | 1 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.87 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | 0.91 | OHPLBJKB_00314 | | 3-dehydroquinate synthase | low | > 73 |
| Escherichia coli Nissle 1917 | 0.87 | ECOLIN_RS18840 | | shikimate dehydrogenase | 0.90 | ECOLIN_RS19360 | | 3-dehydroquinate synthase | 0.93 | 1 |
| Escherichia coli ECRC102 | 0.87 | NIAGMN_15325 | aroE | shikimate dehydrogenase | 0.91 | NIAGMN_14885 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECRC99 | 0.87 | KEDOAH_10585 | aroE | shikimate dehydrogenase | 0.91 | KEDOAH_11025 | aroB | 3-dehydroquinate synthase | — | — |
| Escherichia coli ECRC100 | 0.87 | OKFHMN_17565 | aroE | shikimate dehydrogenase | 0.91 | OKFHMN_17115 | aroB | 3-dehydroquinate synthase | 0.98 | 3 |
| Escherichia coli ECRC101 | 0.87 | MCAODC_08085 | aroE | shikimate dehydrogenase | 0.91 | MCAODC_07645 | aroB | 3-dehydroquinate synthase | 0.95 | 1 |
| Escherichia coli ECRC98 | 0.87 | JDDGAC_21185 | aroE | shikimate dehydrogenase | 0.91 | JDDGAC_20745 | aroB | 3-dehydroquinate synthase | 0.83 | 25 |
| Escherichia fergusonii Becca | 0.86 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | 0.91 | EFB2_00439 | | 3-dehydroquinate synthase | low | > 86 |
| Enterobacter asburiae PDN3 | 0.81 | EX28DRAFT_0046 | | shikimate dehydrogenase | 0.87 | EX28DRAFT_4153 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.63 | 10 |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | 0.87 | MPMX20_04278 | | 3-dehydroquinate synthase | 0.91 | 5 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS25645 | | shikimate dehydrogenase | 0.85 | BWI76_RS26085 | | 3-dehydroquinate synthase | 0.52 | 85 |
| Serratia liquefaciens MT49 | 0.66 | IAI46_23240 | | shikimate dehydrogenase | 0.81 | IAI46_23700 | | 3-dehydroquinate synthase | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS22445 | aroE | shikimate dehydrogenase | 0.81 | LU632_RS22865 | aroB | 3-dehydroquinate synthase | 0.59 | 14 |
| Pantoea sp. MT58 | 0.62 | IAI47_02315 | | shikimate dehydrogenase | 0.83 | IAI47_01895 | | 3-dehydroquinate synthase | — | — |
| Rahnella sp. WP5 | 0.62 | EX31_RS15950 | | shikimate dehydrogenase | 0.84 | EX31_RS04720 | | 3-dehydroquinate synthase | — | — |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS02250 | | shikimate dehydrogenase | 0.80 | HER17_RS01780 | | 3-dehydroquinate synthase | 0.90 | 48 |
| Dickeya dianthicola ME23 | 0.61 | DZA65_RS20315 | | shikimate dehydrogenase | 0.80 | DZA65_RS20760 | | 3-dehydroquinate synthase | — | — |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS19100 | | shikimate dehydrogenase | 0.80 | DDA3937_RS19545 | | 3-dehydroquinate synthase | — | — |
| Dickeya dianthicola 67-19 | 0.60 | HGI48_RS19190 | | shikimate dehydrogenase | 0.80 | HGI48_RS19675 | | 3-dehydroquinate synthase | — | — |
| Shewanella sp. ANA-3 | 0.48 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | 0.63 | Shewana3_3893 | aroB | 3-dehydroquinate synthase (RefSeq) | 0.98 | 1 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_00280 | | shikimate dehydrogenase | 0.63 | CSW01_13300 | | 3-dehydroquinate synthase | low | > 62 |
| Pseudomonas sp. S08-1 | 0.46 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | 0.55 | OH686_10015 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_11315 | | shikimate dehydrogenase | 0.56 | AO356_09385 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas sp. RS175 | 0.46 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | 0.55 | PFR28_05013 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_0025 | | shikimate dehydrogenase | 0.54 | Psyr_0409 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_0025 | | shikimate dehydrogenase | 0.54 | Psyr_0409 | | 3-dehydroquinate synthase | — | — |
| Shewanella loihica PV-4 | 0.46 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | 0.62 | Shew_0214 | | 3-dehydroquinate synthase (RefSeq) | 0.97 | 1 |
| Shewanella oneidensis MR-1 | 0.46 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | 0.63 | SO0287 | aroB | 3-dehydroquinate synthase (NCBI ptt file) | 0.97 | 2 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.56 | Pf1N1B4_1537 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.55 | Pf6N2E2_3754 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.45 | AO353_10670 | | shikimate dehydrogenase | 0.55 | AO353_12505 | | 3-dehydroquinate synthase | — | — |
| Dechlorosoma suillum PS | 0.45 | Dsui_0443 | | shikimate 5-dehydrogenase | 0.54 | Dsui_1095 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS00120 | | shikimate dehydrogenase | 0.56 | PFLU_RS02030 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS00120 | | shikimate dehydrogenase | 0.56 | PFLU_RS02030 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.56 | PfGW456L13_275 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.65 | 63 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_0029 | | shikimate 5-dehydrogenase | 0.55 | Psest_3713 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas simiae WCS417 | 0.44 | PS417_00125 | | shikimate dehydrogenase | 0.56 | PS417_01985 | | 3-dehydroquinate synthase | — | — |
| Pseudomonas putida KT2440 | 0.42 | PP_0074 | | shikimate 5-dehydrogenase | 0.56 | PP_5078 | | 3-dehydroquinate synthase | — | — |
| Shewanella amazonensis SB2B | 0.42 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | 0.63 | Sama_3367 | | 3-dehydroquinate synthase (RefSeq) | 0.95 | 1 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS27130 | | shikimate dehydrogenase | 0.53 | QEN71_RS28035 | | 3-dehydroquinate synthase | 0.77 | 16 |
| Marinobacter adhaerens HP15 | 0.39 | HP15_3750 | | shikimate dehydrogenase | 0.55 | HP15_480 | | 3-dehydroquinate synthase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_01679 | | shikimate dehydrogenase (EC 1.1.1.25) | 0.52 | H281DRAFT_05615 | | 3-dehydroquinate synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS01605 | | shikimate dehydrogenase | 0.51 | ABZR87_RS02590 | | 3-dehydroquinate synthase | 0.55 | 40 |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_003560 | | shikimate dehydrogenase | 0.53 | ABIE53_003740 | | 3-dehydroquinate synthase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF5226 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.51 | GFF1331 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.62 | 15 |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS11620 | | shikimate dehydrogenase | 0.50 | ABCV34_RS12705 | | 3-dehydroquinate synthase | — | — |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | 0.52 | BPHYT_RS17885 | | 3-dehydroquinate synthase | 0.76 | 2 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | 0.52 | MPMX26_02810 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS11300 | | shikimate dehydrogenase | 0.51 | RPSI07_RS10300 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.37 | RALBFv3_RS05945 | | shikimate dehydrogenase | 0.51 | RALBFv3_RS06935 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum UW163 | 0.37 | UW163_RS07680 | | shikimate dehydrogenase | 0.51 | UW163_RS06680 | | 3-dehydroquinate synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.37 | RS_RS13890 | | shikimate dehydrogenase | 0.51 | RS_RS14880 | | 3-dehydroquinate synthase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.36 | RR42_RS17645 | | shikimate dehydrogenase | 0.52 | RR42_RS19005 | | 3-dehydroquinate synthase | 0.82 | 15 |
| Rhodanobacter denitrificans MT42 | 0.34 | LRK55_RS08360 | | shikimate dehydrogenase | 0.41 | LRK55_RS04085 | | 3-dehydroquinate synthase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.34 | LRK54_RS08595 | | shikimate dehydrogenase | 0.41 | LRK54_RS04310 | | 3-dehydroquinate synthase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.33 | ABZR86_RS14985 | | shikimate dehydrogenase | 0.42 | ABZR86_RS10480 | | 3-dehydroquinate synthase | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.32 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.42 | Xcc-8004.1615.1 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.65 | 66 |
| Rhodanobacter sp. FW510-T8 | 0.31 | OKGIIK_15365 | aroE | shikimate dehydrogenase | 0.41 | OKGIIK_11185 | aroB | 3-dehydroquinate synthase | — | — |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_4044 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.52 | Ac3H11_4705 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.82 | 27 |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS01815 | | shikimate dehydrogenase | 0.44 | ABIE51_RS16100 | | 3-dehydroquinate synthase | — | — |
| Variovorax sp. SCN45 | 0.29 | GFF4456 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.49 | GFF5325 | | 3-dehydroquinate synthase (EC 4.2.3.4) | low | > 127 |
| Kangiella aquimarina DSM 16071 | 0.28 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | 0.46 | B158DRAFT_0764 | | 3-dehydroquinate synthase (EC 4.2.3.4) | 0.96 | 1 |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_00029 | | Shikimate dehydrogenase | 0.61 | MIT1002_00447 | | 3-dehydroquinate synthase | — | — |
| Variovorax sp. OAS795 | 0.26 | ABID97_RS06300 | | shikimate dehydrogenase | 0.51 | ABID97_RS23255 | | 3-dehydroquinate synthase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | 0.38 | Dshi_1608 | | 3-dehydroquinate synthase (RefSeq) | — | — |
| Agrobacterium fabrum C58 | 0.22 | Atu0003 | | shikimate 5-dehydrogenase | 0.40 | Atu3625 | | 3-dehydroquinate synthase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c35150 | | shikimate dehydrogenase AroE | 0.39 | PGA1_c14100 | | 3-dehydroquinate synthase AroB | — | — |
| Sinorhizobium meliloti 1021 | 0.21 | SMc02791 | | shikimate 5-dehydrogenase | 0.39 | SMc00696 | | 3-dehydroquinate synthase | — | — |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | 0.42 | Rru_A3741 | | 3-dehydroquinate synthase (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.20 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | 0.39 | MPMX19_02639 | | 3-dehydroquinate synthase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.20 | TX73_022410 | | shikimate dehydrogenase | 0.38 | TX73_002610 | | 3-dehydroquinate synthase | — | — |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS19250 | | shikimate dehydrogenase | 0.40 | ABIE40_RS17670 | | 3-dehydroquinate synthase | — | — |
| Caulobacter crescentus NA1000 | 0.18 | CCNA_00003 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.42 | CCNA_03104 | | 3-dehydroquinate synthase | 0.94 | 3 |
| Caulobacter crescentus NA1000 Δfur | 0.18 | CCNA_00003 | | shikimate 5-dehydrogenase | 0.42 | CCNA_03104 | | 3-dehydroquinate synthase | low | > 67 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.17 | A4249_RS13660 | | shikimate dehydrogenase | 0.40 | A4249_RS04175 | | 3-dehydroquinate synthase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.16 | BACOVA_05065 | | putative shikimate dehydrogenase | 0.23 | BACOVA_04629 | | 3-dehydroquinate synthase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.16 | Ga0059261_2194 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.38 | Ga0059261_3591 | | 3-dehydroquinate synthase (EC 4.2.3.4) | — | — |
| Bacteroides stercoris CC31F | 0.15 | HMPREF1181_RS06320 | | shikimate dehydrogenase | 0.23 | HMPREF1181_RS09265 | | 3-dehydroquinate synthase | 0.85 | 4 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.15 | BT4215 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.22 | BT3975 | | 3-dehydroquinate synthase (NCBI ptt file) | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.15 | Echvi_1145 | | Shikimate 5-dehydrogenase | 0.21 | Echvi_0121 | | 3-dehydroquinate synthase | — | — |