| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_2285 | | ATP-dependent protease La | 1.0 | Psest_0516 | | D-alanyl-D-alanine carboxypeptidase | 0.27 | 16 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.79 | PfGW456L13_1364 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas sp. RS175 | 0.91 | PFR28_01230 | | Lon protease | 0.80 | PFR28_03864 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.91 | AO356_01740 | | DNA-binding protein | 0.79 | AO356_15330 | | D-alanyl-D-alanine carboxypeptidase | 0.43 | 9 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.79 | Pf6N2E2_5001 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_20185 | | DNA-binding protein | 0.78 | AO353_06455 | | D-alanyl-D-alanine carboxypeptidase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.91 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.79 | Pf1N1B4_2696 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas simiae WCS417 | 0.90 | PS417_17225 | | DNA-binding protein | 0.79 | PS417_24705 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS19160 | | endopeptidase La | 0.79 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | 0.39 | 8 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS19160 | | endopeptidase La | 0.79 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.90 | OH686_03635 | | endopeptidase La | 0.72 | OH686_09300 | | D-alanyl-D-alanine carboxypeptidase | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.79 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.79 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas putida KT2440 | 0.88 | PP_2302 | | DNA-binding, ATP-dependent protease | 0.78 | PP_4803 | | D-alanyl-D-alanine carboxypeptidase | low | > 96 |
| Marinobacter adhaerens HP15 | 0.71 | HP15_2183 | | DNA-binding ATP-dependent protease La | 0.55 | HP15_608 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Shewanella loihica PV-4 | 0.70 | Shew_2506 | | ATP-dependent protease La (RefSeq) | 0.44 | Shew_2939 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.70 | SO1796 | lon | ATP-dependent protease La (NCBI ptt file) | 0.44 | SO1164 | dacA-1 | D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.70 | Shewana3_2659 | | Lon-A peptidase (RefSeq) | 0.44 | Shewana3_0991 | | penicillin-binding protein 6 (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS05650 | | endopeptidase La | 0.42 | DDA3937_RS09420 | | serine hydrolase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.69 | HGI48_RS05695 | | endopeptidase La | 0.43 | HGI48_RS09435 | | serine hydrolase | low | > 71 |
| Klebsiella michiganensis M5al | 0.69 | BWI76_RS06535 | | endopeptidase La | 0.44 | BWI76_RS09145 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 92 |
| Dickeya dianthicola ME23 | 0.69 | DZA65_RS06020 | | endopeptidase La | 0.42 | DZA65_RS09745 | | D-alanyl-D-alanine carboxypeptidase | low | > 75 |
| Serratia liquefaciens MT49 | 0.69 | IAI46_05020 | | endopeptidase La | 0.41 | IAI46_05915 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS15840 | | endopeptidase La | 0.43 | HER17_RS12545 | | serine hydrolase | — | — |
| Rahnella sp. WP5 | 0.69 | EX31_RS22255 | | endopeptidase La | 0.42 | EX31_RS23105 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 89 |
| Shewanella amazonensis SB2B | 0.69 | Sama_1226 | | endopeptidase La (RefSeq) | 0.43 | Sama_2592 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Enterobacter sp. TBS_079 | 0.68 | MPMX20_01030 | | Lon protease | 0.41 | MPMX20_01477 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.68 | LU632_RS18335 | lon | endopeptidase La | 0.42 | LU632_RS16390 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | — | — |
| Enterobacter asburiae PDN3 | 0.68 | EX28DRAFT_2531 | | endopeptidase La | 0.41 | EX28DRAFT_2127 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Pantoea sp. MT58 | 0.68 | IAI47_14645 | | endopeptidase La | 0.42 | IAI47_13090 | | serine hydrolase | — | — |
| Escherichia coli ECOR27 | 0.68 | NOLOHH_01255 | lon_P403L | Lon protease | 0.42 | NOLOHH_22410 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 57 |
| Escherichia coli Nissle 1917 | 0.68 | ECOLIN_RS02635 | | endopeptidase La | 0.42 | ECOLIN_RS04460 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Alteromonas macleodii MIT1002 | 0.68 | MIT1002_02757 | | Lon protease | 0.46 | MIT1002_01848 | | D-alanyl-D-alanine carboxypeptidase DacC precursor | — | — |
| Escherichia coli ECOR38 | 0.68 | HEPCGN_06935 | lon_P403L | Lon protease | 0.42 | HEPCGN_01990 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 85 |
| Escherichia coli BL21 | 0.68 | ECD_00391 | | DNA-binding ATP-dependent protease La | 0.42 | ECD_00806 | | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a | low | > 60 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.68 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.41 | GFF744 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 78 |
| Escherichia coli BW25113 | 0.68 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | 0.42 | b0839 | dacC | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.68 | OHPLBJKB_03234 | | Lon protease | 0.42 | OHPLBJKB_02871 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 73 |
| Escherichia coli ECRC62 | 0.68 | BNILDI_22670 | lon_P403L | Lon protease | 0.42 | BNILDI_20670 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_09605 | | endopeptidase La | 0.46 | CSW01_04845 | | D-alanyl-D-alanine carboxypeptidase | low | > 62 |
| Escherichia coli ECRC102 | 0.68 | NIAGMN_06375 | | Lon protease | 0.42 | NIAGMN_04085 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECRC98 | 0.68 | JDDGAC_11975 | | Lon protease | 0.42 | JDDGAC_09675 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS12785 | | endopeptidase La | 0.42 | ABZR87_RS06610 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 80 |
| Escherichia coli ECRC101 | 0.68 | OKFHMN_08320 | | Lon protease | 0.42 | OKFHMN_06040 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECRC99 | 0.68 | KEDOAH_19645 | | Lon protease | 0.42 | KEDOAH_21870 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia fergusonii Becca | 0.68 | EFB2_03618 | | Lon protease | 0.42 | EFB2_03267 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 86 |
| Escherichia coli ECRC101 | 0.68 | MCAODC_27545 | | Lon protease | 0.42 | MCAODC_25255 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.67 | RALBFv3_RS01340 | | endopeptidase La | 0.42 | RALBFv3_RS10770 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Ralstonia solanacearum UW163 | 0.67 | UW163_RS14650 | | endopeptidase La | 0.42 | UW163_RS02810 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Ralstonia solanacearum PSI07 | 0.67 | RPSI07_RS16135 | | endopeptidase La | 0.43 | RPSI07_RS22545 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Ralstonia solanacearum GMI1000 | 0.67 | RS_RS08655 | | endopeptidase La | 0.43 | RS_RS01610 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.67 | QEN71_RS21975 | | endopeptidase La | 0.41 | QEN71_RS01300 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 153 |
| Kangiella aquimarina DSM 16071 | 0.66 | B158DRAFT_1038 | | ATP-dependent protease La | 0.50 | B158DRAFT_0079 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.66 | OKGIIK_08030 | lon | endopeptidase La | 0.46 | OKGIIK_00090 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Lysobacter sp. OAE881 | 0.66 | ABIE51_RS14145 | | endopeptidase La | 0.46 | ABIE51_RS03165 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.66 | ABZR86_RS07320 | | endopeptidase La | 0.47 | ABZR86_RS17490 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.66 | H281DRAFT_00898 | | ATP-dependent proteinase. Serine peptidase. MEROPS family S16 | 0.41 | H281DRAFT_02054 | | penicillin-binding protein 6. Serine peptidase. MEROPS family S11 | — | — |
| Rhodanobacter denitrificans MT42 | 0.66 | LRK55_RS16460 | | endopeptidase La | 0.47 | LRK55_RS06235 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.66 | LRK54_RS16735 | | endopeptidase La | 0.47 | LRK54_RS06490 | | D-alanyl-D-alanine carboxypeptidase | low | > 59 |
| Burkholderia phytofirmans PsJN | 0.66 | BPHYT_RS09460 | | peptidase | 0.41 | BPHYT_RS02415 | | cytochrome C550 | — | — |
| Dechlorosoma suillum PS | 0.66 | Dsui_2198 | | ATP-dependent protease La | 0.48 | Dsui_0899 | | D-alanyl-D-alanine carboxypeptidase | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.66 | RR42_RS09030 | | DNA-binding protein | 0.42 | RR42_RS01680 | | cytochrome C550 | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.66 | Xcc-8004.4046.1 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.44 | Xcc-8004.907.1 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.65 | HSERO_RS12905 | | peptidase | 0.42 | HSERO_RS21530 | | cytochrome C550 | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF4044 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.38 | GFF1806 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_937 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.36 | Ac3H11_2142 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Castellaniella sp019104865 MT123 | 0.65 | ABCV34_RS05125 | | endopeptidase La | 0.45 | ABCV34_RS13340 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_002117 | | ATP-dependent Lon protease | 0.41 | ABIE53_000626 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) | low | > 113 |
| Variovorax sp. OAS795 | 0.64 | ABID97_RS17590 | | endopeptidase La | 0.37 | ABID97_RS00695 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 91 |
| Azospirillum brasilense Sp245 | 0.63 | AZOBR_RS07145 | | peptidase | 0.33 | AZOBR_RS08775 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_01545 | | Lon protease | 0.37 | MPMX19_05873 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 112 |
| Variovorax sp. SCN45 | 0.63 | GFF487 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.45 | GFF1728 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 127 |
| Magnetospirillum magneticum AMB-1 | 0.63 | AMB_RS14035 | | endopeptidase La | 0.32 | AMB_RS12315 | | D-alanyl-D-alanine carboxypeptidase | low | > 64 |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A1552 | | Peptidase S16, ATP-dependent protease La (NCBI) | 0.36 | Rru_A1704 | | Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_015345 | | endopeptidase La | 0.32 | TX73_014370 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Rhizobium sp. OAE497 | 0.61 | ABIE40_RS07100 | | endopeptidase La | 0.25 | ABIE40_RS09505 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Sinorhizobium meliloti 1021 | 0.61 | SMc01905 | | ATP-dependent protease LA protein | 0.27 | SMc01188 | | penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein | — | — |
| Agrobacterium fabrum C58 | 0.60 | Atu1261 | | ATP-dependent protease LA | 0.26 | Atu1499 | | penicillin binding protein | — | — |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c20540 | | ATP-dependent protease La | 0.28 | PGA1_c08020 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Bosea sp. OAE506 | 0.59 | ABIE41_RS18050 | | endopeptidase La | 0.36 | ABIE41_RS15965 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.59 | Dshi_1777 | | ATP-dependent protease La (RefSeq) | 0.26 | Dshi_0923 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_0102 | | endopeptidase La | 0.29 | Ga0059261_0122 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Acinetobacter radioresistens SK82 | 0.55 | MPMX26_02299 | | Lon protease | 0.46 | MPMX26_01051 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 36 |
Not shown: 15 genomes with orthologs for Psest_2285 only; 0 genomes with orthologs for Psest_0516 only