| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_2442 | | RNA polymerase, sigma 54 subunit, RpoN | 1.0 | HP15_p187g51 | | dTDP-4-dehydrorhamnose 3,5-epimerase | 0.49 | 5 |
| Pseudomonas putida KT2440 | 0.63 | PP_0952 | | RNA polymerase sigma-54 factor | 0.56 | PP_0265 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.63 | AO356_07035 | | RNA polymerase sigma-54 factor | 0.57 | AO356_10050 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas sp. RS175 | 0.62 | PFR28_00173 | | RNA polymerase sigma-54 factor | 0.56 | PFR28_04892 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas sp. S08-1 | 0.62 | OH686_08540 | | RNA polymerase sigma-54 factor | 0.54 | OH686_14370 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens SBW25 | 0.62 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.54 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.62 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | 0.54 | PFLU_RS01415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_05180 | | RNA polymerase sigma-54 factor | 0.55 | AO353_11875 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | 0.56 | PfGW456L13_399 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.62 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | 0.56 | Pf6N2E2_3880 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.61 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.53 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.61 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.53 | Psyr_4936 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.61 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | 0.56 | Pf1N1B4_5937 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Pseudomonas stutzeri RCH2 | 0.61 | Psest_3313 | | RNA polymerase sigma-54 factor | 0.59 | Psest_4264 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pseudomonas simiae WCS417 | 0.61 | PS417_04345 | | RNA polymerase factor sigma-54 | 0.55 | PS417_01320 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Alteromonas macleodii MIT1002 | 0.58 | MIT1002_00827 | | RNA polymerase sigma-54 factor 2 | 0.58 | MIT1002_03559 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia coli BW25113 | 0.55 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | 0.48 | b2038 | rfbC | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | 0.52 | OHPLBJKB_01663 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia coli BL21 | 0.55 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | 0.44 | ECD_01944 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RmlC) | — | — |
| Escherichia fergusonii Becca | 0.55 | EFB2_00621 | | RNA polymerase sigma-54 factor | 0.54 | EFB2_01816 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | 0.44 | HEPCGN_03120 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.54 | EX28DRAFT_0520 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dickeya dianthicola 67-19 | 0.54 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | 0.54 | HGI48_RS06765 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 71 |
| Shewanella amazonensis SB2B | 0.54 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | 0.50 | Sama_2237 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | 0.60 | Shewana3_1382 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.54 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | 0.51 | SO3160 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) | — | — |
| Dickeya dianthicola ME23 | 0.54 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | 0.54 | DZA65_RS07120 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | 0.50 | GFF3890 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | low | > 78 |
| Shewanella loihica PV-4 | 0.54 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | 0.59 | Shew_1404 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | low | > 60 |
| Rahnella sp. WP5 | 0.54 | EX31_RS12400 | | RNA polymerase factor sigma-54 | 0.57 | EX31_RS11510 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 89 |
| Dickeya dadantii 3937 | 0.53 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | 0.54 | DDA3937_RS06745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 74 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | 0.55 | BWI76_RS19055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS21280 | rpoN | RNA polymerase factor sigma-54 | 0.61 | LU632_RS08865 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dechlorosoma suillum PS | 0.43 | Dsui_0704 | | RNA polymerase sigma-54 factor | 0.61 | Dsui_1951 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.41 | ABZR86_RS19815 | | RNA polymerase factor sigma-54 | 0.51 | ABZR86_RS18725 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 74 |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS07060 | | RNA polymerase factor sigma-54 | 0.56 | ABZR87_RS08660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS02085 | | RNA polymerase subunit sigma-54 | 0.55 | RR42_RS15830 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodanobacter denitrificans MT42 | 0.40 | LRK55_RS12575 | | RNA polymerase factor sigma-54 | 0.48 | LRK55_RS05430 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.40 | LRK54_RS12875 | | RNA polymerase factor sigma-54 | 0.49 | LRK54_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_02592 | | RNA polymerase sigma-54 factor | 0.47 | MPMX26_00453 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 36 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_01927 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | 0.55 | H281DRAFT_04824 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS02020 | | RNA polymerase sigma-54 factor | 0.58 | RS_RS03445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_000718 | | RNA polymerase sigma-54 factor | 0.54 | ABIE53_001139 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS22130 | | RNA polymerase factor sigma-54 | 0.58 | RPSI07_RS20600 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS02905 | | RNA polymerase subunit sigma-54 | 0.53 | BPHYT_RS30990 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS19855 | | RNA polymerase subunit sigma-54 | 0.47 | HSERO_RS22055 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS11170 | | RNA polymerase sigma-54 factor | 0.57 | RALBFv3_RS12660 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS02410 | | RNA polymerase sigma-54 factor | 0.57 | UW163_RS00905 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS01755 | | RNA polymerase factor sigma-54 | 0.55 | QEN71_RS25745 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.39 | OKGIIK_02265 | | RNA polymerase factor sigma-54 | 0.48 | OKGIIK_01165 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 52 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS15955 | | RNA polymerase factor sigma-54 | 0.44 | ABIE51_RS15610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.1662.1 | | RNA polymerase sigma-54 factor RpoN | 0.46 | Xcc-8004.4484.1 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Acidovorax sp. GW101-3H11 | 0.36 | Ac3H11_727 | | RNA polymerase sigma-54 factor RpoN | 0.56 | Ac3H11_1883 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS04780 | | RNA polymerase factor sigma-54 | 0.61 | ABID97_RS05675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF3068 | | RNA polymerase sigma-54 factor RpoN | 0.61 | GFF1840 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Variovorax sp. SCN45 | 0.33 | GFF6290 | | RNA polymerase sigma-54 factor RpoN | 0.61 | GFF6879 | | dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) | — | — |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A0010 | | Sigma-54 (RpoN) (NCBI) | 0.37 | Rru_B0038 | | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.32 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | 0.42 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 66 |
| Agrobacterium fabrum C58 | 0.32 | Atu0332 | | RNA polymerase sigma-54 factor | 0.35 | Atu4618 | | dTDP-rhamnose-3,5-epimerase | low | > 89 |
| Caulobacter crescentus NA1000 Δfur | 0.32 | CCNA_03713 | | RNA polymerase sigma-54 factor rpoN | 0.42 | CCNA_03748 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 67 |
| Desulfovibrio vulgaris Miyazaki F | 0.31 | DvMF_0427 | | RNA polymerase, sigma 54 subunit, RpoN (RefSeq) | 0.44 | DvMF_2692 | | dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.31 | DVU1628 | rpoN | RNA polymerase sigma-54 factor (TIGR) | 0.38 | DVU0698 | rfbC | dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) | — | — |
| Rhizobium sp. OAE497 | 0.30 | ABIE40_RS01860 | | RNA polymerase factor sigma-54 | 0.39 | ABIE40_RS08675 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 107 |
| Bosea sp. OAE506 | 0.30 | ABIE41_RS00125 | | RNA polymerase factor sigma-54 | 0.39 | ABIE41_RS10415 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 77 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS18870 | | RNA polymerase sigma54 factor | 0.39 | AZOBR_RS33410 | | dTDP-4-dehydrorhamnose 3 5-epimerase | low | > 97 |
| Sinorhizobium meliloti 1021 | 0.30 | SMc01139 | | RNA polymerase factor sigma-54 | 0.36 | SM_b21325 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 103 |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS19925 | | RNA polymerase sigma-54 factor | 0.39 | AMB_RS07445 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_02668 | | RNA polymerase sigma-54 factor 2 | 0.39 | MPMX19_06724 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Castellaniella sp019104865 MT123 | 0.27 | ABCV34_RS12430 | | RNA polymerase factor sigma-54 | 0.50 | ABCV34_RS02485 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.27 | CA265_RS11005 | | RNA polymerase sigma-54 factor | 0.36 | CA265_RS19335 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.26 | TX73_000260 | | RNA polymerase factor sigma-54 | 0.39 | TX73_000610 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 86 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_0071 | | RNA polymerase sigma-54 factor | 0.39 | Echvi_1151 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.25 | ABZR88_RS14570 | | RNA polymerase factor sigma-54 | 0.42 | ABZR88_RS17420 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.25 | CA264_18070 | | RNA polymerase sigma-54 factor | 0.39 | CA264_15705 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.24 | HMPREF1078_RS05920 | | RNA polymerase factor sigma-54 | 0.41 | HMPREF1078_RS00700 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.21 | BACOVA_01616 | | RNA polymerase sigma-54 factor | 0.42 | BACOVA_02563 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.21 | ABI39_RS04230 | | RNA polymerase factor sigma-54 | 0.41 | ABI39_RS13380 | | dTDP-4-dehydrorhamnose 3,5-epimerase | low | > 72 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.21 | BT2521 | | RNA polymerase sigma-54 (NCBI ptt file) | 0.41 | BT1338 | | dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.20 | HMPREF1058_RS12505 | | RNA polymerase factor sigma-54 | 0.40 | HMPREF1058_RS06635 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
| Bacteroides stercoris CC31F | 0.20 | HMPREF1181_RS00925 | | RNA polymerase factor sigma-54 | 0.45 | HMPREF1181_RS14380 | | dTDP-4-dehydrorhamnose 3,5-epimerase | — | — |
Not shown: 16 genomes with orthologs for HP15_2442 only; 5 genomes with orthologs for HP15_p187g51 only