| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_527 | | pseudouridine synthase, RluA family | 1.0 | HP15_309 | | DNA helicase, ATP-dependent, RecG | 0.48 | 5 |
| Pseudomonas sp. S08-1 | 0.61 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.61 | OH686_13505 | | ATP-dependent DNA helicase RecG | low | > 80 |
| Pseudomonas putida KT2440 | 0.60 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.60 | PP_5310 | | junction-specific ATP-dependent DNA helicase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.60 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.59 | AO356_12380 | | ATP-dependent DNA helicase RecG | low | > 104 |
| Pseudomonas syringae pv. syringae B728a | 0.60 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.59 | Psyr_0201 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.60 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.59 | Psyr_0201 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.60 | AO353_09320 | | ATP-dependent DNA helicase RecG | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.59 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.61 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.59 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.61 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.59 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.60 | PfGW456L13_772 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.59 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.59 | Pf6N2E2_4352 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | — | — |
| Pseudomonas sp. RS175 | 0.59 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.59 | PFR28_04435 | | ATP-dependent DNA helicase RecG | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.59 | Psest_0709 | | pseudouridine synthase, RluA family | 0.61 | Psest_4192 | | ATP-dependent DNA helicase RecG | — | — |
| Pseudomonas simiae WCS417 | 0.59 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.60 | PS417_27870 | | ATP-dependent DNA helicase RecG | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.59 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.60 | Pf1N1B4_2105 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | — | — |
| Alteromonas macleodii MIT1002 | 0.58 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.56 | MIT1002_00111 | | ATP-dependent DNA helicase RecG | low | > 70 |
| Shewanella loihica PV-4 | 0.56 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.56 | Shew_3507 | | ATP-dependent DNA helicase RecG (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.57 | Shewana3_0348 | | ATP-dependent DNA helicase RecG (RefSeq) | low | > 73 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | DDA3937_RS00170 | | ATP-dependent DNA helicase RecG | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.55 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 0.49 | B158DRAFT_0566 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 40 |
| Dickeya dianthicola ME23 | 0.54 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | DZA65_RS22160 | | ATP-dependent DNA helicase RecG | low | > 75 |
| Dickeya dianthicola 67-19 | 0.54 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | HGI48_RS21190 | | ATP-dependent DNA helicase RecG | low | > 71 |
| Shewanella amazonensis SB2B | 0.54 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.57 | Sama_3375 | | ATP-dependent DNA helicase RecG (RefSeq) | — | — |
| Rahnella sp. WP5 | 0.54 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | EX31_RS15820 | | ATP-dependent DNA helicase RecG | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.56 | LU632_RS22190 | recG | ATP-dependent DNA helicase RecG | low | > 74 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | IAI46_24905 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.53 | ABIE51_RS17230 | | ATP-dependent DNA helicase RecG | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.50 | Xcc-8004.1204.1 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 74 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.54 | BWI76_RS27440 | | DNA helicase RecG | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.55 | GFF355 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 78 |
| Escherichia coli ECOR27 | 0.53 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | NOLOHH_07425 | recG | ATP-dependent DNA helicase RecG | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.53 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.55 | OHPLBJKB_00049 | | ATP-dependent DNA helicase RecG | low | > 73 |
| Escherichia coli BL21 | 0.53 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.55 | ECD_03509 | | ATP-dependent DNA helicase | low | > 60 |
| Escherichia coli BW25113 | 0.53 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.55 | b3652 | recG | ATP-dependent DNA helicase (NCBI) | — | — |
| Escherichia coli ECRC62 | 0.53 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | BNILDI_04090 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia fergusonii Becca | 0.53 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.55 | EFB2_00136 | | ATP-dependent DNA helicase RecG | 0.42 | 76 |
| Escherichia coli Nissle 1917 | 0.53 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | ECOLIN_RS20800 | | ATP-dependent DNA helicase RecG | low | > 52 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.55 | EX28DRAFT_3901 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 76 |
| Escherichia coli ECRC101 | 0.53 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | MCAODC_06055 | recG | ATP-dependent DNA helicase RecG | — | — |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | LRK55_RS11530 | | ATP-dependent DNA helicase RecG | low | > 63 |
| Escherichia coli ECOR38 | 0.53 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | HEPCGN_14365 | recG | ATP-dependent DNA helicase RecG | low | > 85 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | LRK54_RS11805 | | ATP-dependent DNA helicase RecG | low | > 59 |
| Escherichia coli ECRC99 | 0.53 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | KEDOAH_12600 | recG | ATP-dependent DNA helicase RecG | — | — |
| Pectobacterium carotovorum WPP14 | 0.53 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | HER17_RS21395 | | ATP-dependent DNA helicase RecG | low | > 75 |
| Escherichia coli ECRC101 | 0.53 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | OKFHMN_15545 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECRC102 | 0.53 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | NIAGMN_13305 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECRC98 | 0.53 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | JDDGAC_19170 | recG | ATP-dependent DNA helicase RecG | — | — |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.55 | MPMX20_00084 | | ATP-dependent DNA helicase RecG | 0.39 | 61 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.54 | CSW01_13680 | | DNA helicase RecG | low | > 62 |
| Pantoea sp. MT58 | 0.51 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | IAI47_00500 | | ATP-dependent DNA helicase RecG | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | ABZR86_RS11840 | | ATP-dependent DNA helicase RecG | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.51 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | OKGIIK_12090 | recG | ATP-dependent DNA helicase RecG | low | > 52 |
| Dechlorosoma suillum PS | 0.47 | Dsui_2530 | | pseudouridine synthase, RluA family | 0.42 | Dsui_0311 | | ATP-dependent DNA helicase RecG | low | > 51 |
| Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.46 | ABZR87_RS01270 | | ATP-dependent DNA helicase RecG | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.46 | RPSI07_RS11625 | | DNA helicase RecG | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.43 | RS_RS08205 | | RluA family pseudouridine synthase | 0.46 | RS_RS13565 | | DNA helicase RecG | — | — |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.54 | MPMX26_02732 | | ATP-dependent DNA helicase RecG | low | > 36 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.46 | UW163_RS07950 | | DNA helicase RecG | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.46 | RALBFv3_RS05675 | | DNA helicase RecG | low | > 76 |
| Sphingomonas koreensis DSMZ 15582 | 0.38 | Ga0059261_0664 | | pseudouridine synthase, RluA family | 0.33 | Ga0059261_0958 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.37 | TX73_001905 | | RluA family pseudouridine synthase | 0.31 | TX73_013795 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.43 | Ac3H11_781 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 79 |
| Rhizobium sp. OAE497 | 0.37 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.35 | ABIE40_RS09300 | | ATP-dependent DNA helicase RecG | low | > 107 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.43 | GFF2802 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 90 |
| Synechococcus elongatus PCC 7942 | 0.36 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | 0.35 | Synpcc7942_1079 | recG | ATP-dependent DNA helicase RecG | — | — |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.33 | MPMX19_00951 | | ATP-dependent DNA helicase RecG | — | — |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.44 | ABCV34_RS03570 | | ATP-dependent DNA helicase RecG | low | > 48 |
| Agrobacterium fabrum C58 | 0.35 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | 0.36 | Atu1780 | | ATP-dependent DNA helicase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.35 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | 0.33 | HMPREF1058_RS08295 | | ATP-dependent DNA helicase RecG | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.35 | ABI39_RS02845 | | RluA family pseudouridine synthase | 0.32 | ABI39_RS02470 | | ATP-dependent DNA helicase RecG | low | > 72 |
| Rhodospirillum rubrum S1H | 0.35 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.32 | Rru_A1728 | | ATP-dependent DNA helicase RecG (NCBI) | — | — |
| Sinorhizobium meliloti 1021 | 0.35 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 0.35 | SMc00228 | | ATP-dependent DNA helicase RecG | low | > 103 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS16095 | | RluA family pseudouridine synthase | 0.35 | AMB_RS12400 | | ATP-dependent DNA helicase RecG | — | — |
| Bosea sp. OAE506 | 0.35 | ABIE41_RS05635 | | RluA family pseudouridine synthase | 0.31 | ABIE41_RS15815 | | ATP-dependent DNA helicase RecG | low | > 77 |
| Variovorax sp. SCN45 | 0.35 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.39 | GFF5538 | | ATP-dependent DNA helicase RecG (EC 3.6.4.12) | low | > 127 |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.41 | ABID97_RS01575 | | ATP-dependent DNA helicase RecG | low | > 91 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.32 | CCNA_01504 | | ATP-dependent DNA helicase recG | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.32 | CCNA_01504 | | ATP-dependent DNA helicase recG | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.33 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | 0.32 | BT3924 | | ATP-dependent DNA helicase recG (NCBI ptt file) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.33 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | 0.32 | HMPREF1078_RS12765 | | ATP-dependent DNA helicase RecG | — | — |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.34 | PGA1_c14380 | | ATP-dependent DNA helicase RecG | low | > 62 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.32 | Echvi_0642 | | pseudouridine synthase, RluA family | 0.31 | Echvi_1162 | | ATP-dependent DNA helicase RecG | low | > 79 |
| Bacteroides stercoris CC31F | 0.32 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | 0.32 | HMPREF1181_RS06615 | | ATP-dependent DNA helicase RecG | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.32 | CA264_15205 | | RNA pseudouridine synthase | 0.31 | CA264_15020 | | DNA helicase RecG | low | > 74 |
| Dinoroseobacter shibae DFL-12 | 0.31 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | 0.33 | Dshi_1510 | | DEAD/DEAH box helicase domain protein (RefSeq) | low | > 64 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.31 | CA265_RS14415 | | pseudouridine synthase | 0.33 | CA265_RS22835 | | ATP-dependent DNA helicase RecG | low | > 88 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.31 | ABZR88_RS03985 | | RluA family pseudouridine synthase | 0.31 | ABZR88_RS17240 | | ATP-dependent DNA helicase RecG | low | > 71 |
| Fusobacterium nucleatum SB010 | 0.30 | HUW76_08575 | | RluA family pseudouridine synthase | 0.32 | HUW76_01465 | | ATP-dependent DNA helicase RecG | low | > 35 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.28 | A4249_RS10060 | | RluA family pseudouridine synthase | 0.29 | A4249_RS04765 | | ATP-dependent DNA helicase RecG | low | > 48 |
| Mycobacterium tuberculosis H37Rv | 0.22 | Rv1540 | | Conserved hypothetical protein member of yabO/yceC/yfiI family | 0.25 | Rv2973c | | Probable ATP-dependent DNA helicase RecG | — | — |
Not shown: 4 genomes with orthologs for HP15_527 only; 8 genomes with orthologs for HP15_309 only