Conservation of cofitness between GFF5534 and GFF2813 in Variovorax sp. SCN45

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 1.0 GFF2813 LSU ribosomal protein L9p 0.50 15
Variovorax sp. OAS795 0.96 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.80 ABID97_RS10840 50S ribosomal protein L9 low > 91
Acidovorax sp. GW101-3H11 0.88 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.72 Ac3H11_1514 LSU ribosomal protein L9p low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.87 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.69 GFF3928 LSU ribosomal protein L9p low > 90
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.66 HSERO_RS10385 50S ribosomal protein L9 — —
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS17400 queuine tRNA-ribosyltransferase 0.68 RR42_RS12590 50S ribosomal protein L9 low > 128
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.62 BPHYT_RS08870 50S ribosomal protein L9 — —
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_04670 tRNA-guanine transglycosylase 0.62 H281DRAFT_00792 LSU ribosomal protein L9P — —
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.63 ABZR87_RS11360 50S ribosomal protein L9 — —
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.73 QEN71_RS22490 50S ribosomal protein L9 low > 153
Castellaniella sp019104865 MT123 0.63 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.61 ABCV34_RS02260 50S ribosomal protein L9 — —
Ralstonia solanacearum GMI1000 0.63 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt 0.62 RS_RS06570 50S ribosomal protein L9 — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.65 RALBFv3_RS15790 50S ribosomal protein L9 — —
Ralstonia solanacearum UW163 0.62 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt 0.65 UW163_RS13235 50S ribosomal protein L9 — —
Dechlorosoma suillum PS 0.62 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.64 Dsui_1992 ribosomal protein L9 low > 51
Ralstonia solanacearum PSI07 0.61 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.57 RPSI07_RS17575 50S ribosomal protein L9 — —
Acinetobacter radioresistens SK82 0.59 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.47 MPMX26_01155 50S ribosomal protein L9 low > 36
Shewanella sp. ANA-3 0.57 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.36 Shewana3_0704 rplI 50S ribosomal protein L9 (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.46 CSW01_01940 50S ribosomal protein L9 — —
Lysobacter sp. OAE881 0.57 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.38 ABIE51_RS09230 50S ribosomal protein L9 low > 62
Shewanella oneidensis MR-1 0.57 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.39 SO3927 rplI ribosomal protein L9 (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.57 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.38 Sama_3061 rplI 50S ribosomal protein L9 (RefSeq) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1228 tRNA-guanine transglycosylase 0.42 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1228 tRNA-guanine transglycosylase 0.42 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas stutzeri RCH2 0.56 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.46 Psest_0697 ribosomal protein L9 low > 67
Pseudomonas sp. RS175 0.56 PFR28_00277 Queuine tRNA-ribosyltransferase 0.42 PFR28_05135 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_06690 queuine tRNA-ribosyltransferase 0.41 AO356_08585 50S ribosomal protein L9 low > 104
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.41 Pf6N2E2_3602 LSU ribosomal protein L9p — —
Pseudomonas sp. S08-1 0.56 OH686_17430 tRNA-guanine transglycosylase 0.40 OH686_15935 ribosomal protein L9 low > 80
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.38 PFLU_RS02650 50S ribosomal protein L9 — —
Pseudomonas simiae WCS417 0.56 PS417_23245 queuine tRNA-ribosyltransferase 0.38 PS417_02580 50S ribosomal protein L9 — —
Pseudomonas fluorescens SBW25 0.56 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.38 PFLU_RS02650 50S ribosomal protein L9 0.40 67
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.45 PfGW456L13_139 LSU ribosomal protein L9p low > 87
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_15790 queuine tRNA-ribosyltransferase 0.41 AO353_13225 50S ribosomal protein L9 — —
Shewanella loihica PV-4 0.56 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.44 Shew_3281 rplI 50S ribosomal protein L9 (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.39 Xcc-8004.3313.1 LSU ribosomal protein L9p low > 74
Alteromonas macleodii MIT1002 0.55 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.42 MIT1002_03816 50S ribosomal protein L9 low > 70
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.41 Pf1N1B4_1398 LSU ribosomal protein L9p — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.46 B158DRAFT_2004 LSU ribosomal protein L9P low > 40
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.40 ABZR86_RS08860 50S ribosomal protein L9 low > 74
Pseudomonas putida KT2440 0.55 PP_0833 queuine tRNA-ribosyltransferase 0.43 PP_4874 50S ribosomal protein L9 low > 96
Marinobacter adhaerens HP15 0.55 HP15_1479 queuine tRNA-ribosyltransferase 0.51 HP15_628 50S ribosomal protein L9 — —
Rhodanobacter denitrificans MT42 0.55 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.40 LRK55_RS02290 50S ribosomal protein L9 low > 63
Serratia liquefaciens MT49 0.55 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.44 IAI46_01715 50S ribosomal protein L9 — —
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.40 LRK54_RS02535 50S ribosomal protein L9 low > 59
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.41 EX28DRAFT_3388 ribosomal protein L9 — —
Enterobacter sp. TBS_079 0.54 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.45 MPMX20_00480 50S ribosomal protein L9 low > 85
Dickeya dianthicola ME23 0.54 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.46 DZA65_RS18360 50S ribosomal protein L9 — —
Dickeya dadantii 3937 0.54 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.47 DDA3937_RS17215 50S ribosomal protein L9 — —
Dickeya dianthicola 67-19 0.54 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.46 HGI48_RS17270 50S ribosomal protein L9 — —
Escherichia coli ECOR38 0.54 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 HEPCGN_10330 rplI 50S ribosomal protein L9 — —
Escherichia coli BW25113 0.54 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.46 b4203 rplI 50S ribosomal protein L9 (NCBI) 0.28 71
Escherichia coli BL21 0.54 ECD_00354 tRNA-guanine transglycosylase 0.46 ECD_04070 50S ribosomal subunit protein L9 low > 61
Escherichia coli ECRC98 0.54 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 JDDGAC_15740 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC62 0.54 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 BNILDI_07125 rplI 50S ribosomal protein L9 — —
Escherichia fergusonii Becca 0.54 EFB2_03651 Queuine tRNA-ribosyltransferase 0.46 EFB2_04332 50S ribosomal protein L9 low > 86
Escherichia coli ECRC100 0.54 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 OKFHMN_12100 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC101 0.54 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 MCAODC_02615 rplI 50S ribosomal protein L9 — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.46 ECOLIN_RS24390 50S ribosomal protein L9 — —
Escherichia coli ECRC99 0.54 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 KEDOAH_16055 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC102 0.54 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 NIAGMN_09950 rplI 50S ribosomal protein L9 — —
Escherichia coli ECOR27 0.54 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.46 NOLOHH_04360 rplI 50S ribosomal protein L9 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.46 OHPLBJKB_03839 50S ribosomal protein L9 — —
Klebsiella michiganensis M5al 0.54 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.41 BWI76_RS02675 50S ribosomal protein L9 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.45 GFF857 LSU ribosomal protein L9p — —
Rahnella sp. WP5 0.54 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.43 EX31_RS08745 50S ribosomal protein L9 low > 89
Pectobacterium carotovorum WPP14 0.54 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.43 HER17_RS03905 50S ribosomal protein L9 — —
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.40 OKGIIK_09590 rplI 50S ribosomal protein L9 0.48 49
Pantoea sp. MT58 0.53 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.44 IAI47_02675 50S ribosomal protein L9 — —
Erwinia tracheiphila SCR3 0.53 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.43 LU632_RS21710 rplI 50S ribosomal protein L9 low > 74
Desulfovibrio vulgaris Miyazaki F 0.47 DvMF_2757 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.30 DvMF_1352 rplI 50S ribosomal protein L9 (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) 0.31 DVU0958 rplI ribosomal protein L9 (TIGR) — —
Fusobacterium nucleatum SB010 0.45 HUW76_09025 tRNA guanosine(34) transglycosylase Tgt 0.20 HUW76_02105 50S ribosomal protein L9 low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.45 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.25 CA265_RS02395 50S ribosomal protein L9 — —
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt 0.30 HMPREF1078_RS10755 50S ribosomal protein L9 low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.24 Echvi_2386 ribosomal protein L9 — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.28 ABZR88_RS05035 50S ribosomal protein L9 — —
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14345 tRNA guanosine(34) transglycosylase Tgt 0.29 HMPREF1181_RS08725 50S ribosomal protein L9 low > 56
Phocaeicola dorei CL03T12C01 0.42 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt 0.30 ABI39_RS00060 50S ribosomal protein L9 — —
Phocaeicola vulgatus CL09T03C04 0.42 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt 0.30 HMPREF1058_RS07635 50S ribosomal protein L9 low > 67
Bacteroides thetaiotaomicron VPI-5482 0.41 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) 0.28 BT2161 50S ribosomal protein L9 (NCBI ptt file) — —
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0455 tgt queuine tRNA-ribosyltransferase 0.25 Synpcc7942_2559 rplI 50S ribosomal protein L9 low > 38
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_00655 tRNA-guanine(34) transglycosylase 0.28 CA264_01265 50S ribosomal protein L9 low > 74
Bacteroides ovatus ATCC 8483 0.41 BACOVA_02570 tRNA-guanine transglycosylase 0.28 BACOVA_03185 ribosomal protein L9 — —
Bifidobacterium breve UCC2003 0.34 BBR_RS10715 tRNA-guanine(34) transglycosylase 0.28 BBR_RS11595 50S ribosomal protein L9 low > 34

Not shown: 15 genomes with orthologs for GFF5534 only; 2 genomes with orthologs for GFF2813 only