Conservation of cofitness between GFF5584 and GFF2804 in Hydrogenophaga sp. GW460-11-11-14-LB1

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF5584 DNA polymerase I (EC 2.7.7.7) 1.0 GFF2804 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) 0.70 19
Variovorax sp. SCN45 0.77 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.77 GFF5550 DNA protection during starvation protein low > 127
Variovorax sp. OAS795 0.75 ABID97_RS09180 DNA polymerase I 0.76 ABID97_RS01565 DNA starvation/stationary phase protection protein 0.74 7
Acidovorax sp. GW101-3H11 0.74 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) 0.84 Ac3H11_786 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) — —
Ralstonia solanacearum GMI1000 0.60 RS_RS11195 DNA polymerase I 0.64 RS_RS13455 DNA starvation/stationary phase protection protein low > 80
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS03750 DNA polymerase I 0.64 RALBFv3_RS05595 DNA starvation/stationary phase protection protein 0.64 19
Ralstonia solanacearum UW163 0.59 UW163_RS09920 DNA polymerase I 0.64 UW163_RS08030 DNA starvation/stationary phase protection protein — —
Ralstonia solanacearum PSI07 0.59 RPSI07_RS13480 DNA polymerase I 0.64 RPSI07_RS11705 DNA starvation/stationary phase protection protein 0.51 32
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS15680 DNA polymerase I 0.71 ABZR87_RS01245 Dps family protein low > 80
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS02260 DNA polymerase I 0.65 HSERO_RS02145 ferritin 0.62 5
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS17885 DNA polymerase I 0.62 QEN71_RS26610 Dps family protein — —
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS15050 DNA polymerase I 0.65 RR42_RS17370 ferritin — —
Paraburkholderia graminis OAS925 0.56 ABIE53_004852 DNA polymerase-1 0.64 ABIE53_000838 starvation-inducible DNA-binding protein 0.38 19
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_06022 DNA polymerase I 0.64 H281DRAFT_04677 starvation-inducible DNA-binding protein 0.40 55
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS33610 DNA polymerase I 0.66 BPHYT_RS03480 ferritin 0.20 99
Dechlorosoma suillum PS 0.53 Dsui_0459 DNA polymerase I 0.66 Dsui_0822 DNA-binding ferritin-like protein (oxidative damage protectant) low > 51
Castellaniella sp019104865 MT123 0.53 ABCV34_RS02195 DNA polymerase I 0.63 ABCV34_RS03580 Dps family protein low > 48
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) 0.55 B158DRAFT_0476 DNA-binding ferritin-like protein (oxidative damage protectant) 0.48 39
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS17015 DNA polymerase I 0.57 ABZR86_RS19715 Dps family protein 0.53 4
Rhodanobacter denitrificans MT42 0.47 LRK55_RS06585 DNA polymerase I 0.55 LRK55_RS12415 Dps family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.47 LRK54_RS06840 DNA polymerase I 0.55 LRK54_RS12710 DNA starvation/stationary phase protection protein 0.87 1
Pseudomonas sp. S08-1 0.47 OH686_12215 DNA polymerase I 0.64 OH686_19105 DNA protection during starvation protein low > 80
Shewanella amazonensis SB2B 0.47 Sama_0093 DNA-directed DNA polymerase (RefSeq) 0.52 Sama_2598 Dps family protein (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_16785 polA DNA polymerase I 0.55 OKGIIK_02150 dps DNA-binding ferritin-like protein (oxidative damage protectant) low > 52
Lysobacter sp. OAE881 0.46 ABIE51_RS02010 DNA polymerase I 0.62 ABIE51_RS05150 Dps family protein low > 62
Pseudomonas stutzeri RCH2 0.46 Psest_4219 DNA polymerase I 0.65 Psest_1492 DNA-binding ferritin-like protein (oxidative damage protectant) 0.73 1
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_00560 DNA polymerase I 0.19 CSW01_00700 DNA starvation/stationary phase protection protein low > 62
Marinobacter adhaerens HP15 0.45 HP15_293 DNA polymerase I 0.25 HP15_3253 ferritin-like DNA-binding protein 0.43 7
Alteromonas macleodii MIT1002 0.45 MIT1002_00014 DNA polymerase I 0.55 MIT1002_00525 DNA protection during starvation protein 2 low > 70
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) 0.60 Xcc-8004.1478.1 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) — —
Shewanella sp. ANA-3 0.44 Shewana3_4109 DNA polymerase I (RefSeq) 0.54 Shewana3_0985 Ferritin, Dps family protein (RefSeq) — —
Shewanella oneidensis MR-1 0.44 SO4669 polA DNA polymerase I (NCBI ptt file) 0.54 SO1158 Dps family protein (NCBI ptt file) — —
Pseudomonas putida KT2440 0.44 PP_0123 DNA polymerase I, 5 0.62 PP_1210 DNA-binding stress protein low > 96
Pseudomonas fluorescens SBW25 0.44 PFLU_RS00395 DNA polymerase I 0.61 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS00395 DNA polymerase I 0.61 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Pseudomonas simiae WCS417 0.44 PS417_00405 DNA polymerase I 0.60 PS417_22480 ferritin low > 88
Pantoea sp. MT58 0.43 IAI47_00430 DNA polymerase I 0.15 IAI47_13195 DNA starvation/stationary phase protection protein Dps 0.56 6
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.60 Pf6N2E2_5529 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 103
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) 0.15 EX28DRAFT_2174 DNA-binding ferritin-like protein (oxidative damage protectant) — —
Dickeya dadantii 3937 0.43 DDA3937_RS00105 DNA polymerase I 0.27 DDA3937_RS06890 DNA starvation/stationary phase protection protein — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_11465 DNA polymerase I 0.60 AO356_17990 ferritin 0.35 25
Enterobacter sp. TBS_079 0.43 MPMX20_04601 DNA polymerase I 0.15 MPMX20_01442 DNA protection during starvation protein low > 85
Escherichia coli ECRC102 0.43 NIAGMN_11905 polA DNA polymerase I 0.15 NIAGMN_04250 dps DNA starvation/stationary phase protection protein Dps — —
Pseudomonas sp. RS175 0.43 PFR28_04624 DNA polymerase I 0.60 PFR28_03419 DNA protection during starvation protein 2 low > 88
Escherichia coli ECRC101 0.43 MCAODC_04650 polA DNA polymerase I 0.15 MCAODC_25420 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli ECRC100 0.43 OKFHMN_14150 polA DNA polymerase I 0.15 OKFHMN_06205 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli BL21 0.43 ECD_03749 5 0.15 ECD_00779 Fe-binding and storage protein; stress-inducible DNA-binding protein — —
Escherichia coli ECRC99 0.43 KEDOAH_14000 polA DNA polymerase I 0.15 KEDOAH_21705 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli ECOR27 0.43 NOLOHH_06280 polA DNA polymerase I 0.15 NOLOHH_22555 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli BW25113 0.43 b3863 polA DNA polymerase I (NCBI) 0.15 b0812 dps DNA protection during starvation conditions (NCBI) low > 76
Escherichia coli ECRC98 0.43 JDDGAC_17775 polA DNA polymerase I 0.15 JDDGAC_09840 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli Nissle 1917 0.43 ECOLIN_RS22270 DNA polymerase I 0.15 ECOLIN_RS04330 DNA starvation/stationary phase protection protein Dps — —
Serratia liquefaciens MT49 0.43 IAI46_24985 DNA polymerase I 0.28 IAI46_14135 DNA starvation/stationary phase protection protein low > 86
Escherichia coli ECRC62 0.43 BNILDI_05250 polA DNA polymerase I 0.15 BNILDI_20835 dps DNA starvation/stationary phase protection protein Dps — —
Dickeya dianthicola 67-19 0.43 HGI48_RS21260 DNA polymerase I 0.26 HGI48_RS06880 DNA starvation/stationary phase protection protein — —
Escherichia coli ECOR38 0.43 HEPCGN_12785 polA DNA polymerase I 0.15 HEPCGN_01835 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia fergusonii Becca 0.43 EFB2_04753 DNA polymerase I 0.15 EFB2_03293 DNA protection during starvation protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_04189 DNA polymerase I 0.15 OHPLBJKB_02901 DNA protection during starvation protein — —
Dickeya dianthicola ME23 0.43 DZA65_RS22235 DNA polymerase I 0.26 DZA65_RS07220 DNA starvation/stationary phase protection protein — —
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_0270 DNA polymerase I 0.61 Psyr_1404 Ferritin and Dps low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_0270 DNA polymerase I 0.61 Psyr_1404 Ferritin and Dps low > 86
Erwinia tracheiphila SCR3 0.42 LU632_RS23870 polA DNA polymerase I 0.16 LU632_RS09460 dps DNA starvation/stationary phase protection protein Dps — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.16 GFF707 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 78
Pectobacterium carotovorum WPP14 0.42 HER17_RS21470 DNA polymerase I 0.19 HER17_RS13060 DNA starvation/stationary phase protection protein Dps — —
Rahnella sp. WP5 0.42 EX31_RS15905 DNA polymerase I 0.16 EX31_RS18915 DNA starvation/stationary phase protection protein Dps low > 89
Acinetobacter radioresistens SK82 0.39 MPMX26_00574 DNA polymerase I 0.63 MPMX26_01495 DNA protection during starvation protein 2 low > 36
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS13840 DNA polymerase I 0.25 A4249_RS05095 DNA starvation/stationary phase protection protein — —
Caulobacter crescentus NA1000 0.35 CCNA_03577 DNA polymerase I 0.47 CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase low > 66
Azospirillum brasilense Sp245 0.35 AZOBR_RS30685 DNA polymerase 0.66 AZOBR_RS12945 ferritin — —
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_03577 DNA polymerase I 0.47 CCNA_02966 non-specific DNA-binding protein Dps/iron-binding ferritin-like antioxidant protein/ferroxidase low > 67
Azospirillum sp. SherDot2 0.34 MPMX19_04869 DNA polymerase I 0.64 MPMX19_02373 DNA protection during starvation protein 2 0.38 42
Dinoroseobacter shibae DFL-12 0.34 Dshi_2909 DNA polymerase I (RefSeq) 0.36 Dshi_3839 Ferritin Dps family protein (RefSeq) low > 64
Rhizobium sp. OAE497 0.34 ABIE40_RS00490 DNA polymerase I 0.35 ABIE40_RS18810 DNA starvation/stationary phase protection protein low > 107
Phaeobacter inhibens DSM 17395 0.33 PGA1_c31780 DNA polymerase I 0.37 PGA1_c27100 putative ferritin low > 62
Rhodopseudomonas palustris CGA009 0.33 TX73_024545 DNA polymerase I 0.66 TX73_014275 DNA starvation/stationary phase protection protein low > 86
Bacteroides ovatus ATCC 8483 0.33 BACOVA_01357 DNA-directed DNA polymerase 0.23 BACOVA_05566 DNA protection during starvation protein low > 94
Rhodospirillum rubrum S1H 0.33 Rru_A3514 DNA polymerase A (NCBI) 0.60 Rru_A0333 Ferritin and Dps (NCBI) — —
Bacteroides thetaiotaomicron VPI-5482 0.32 BT3260 DNA polymerase I (NCBI ptt file) 0.23 BT4715 non-specific DNA-binding protein Dps (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_16535 DNA polymerase I 0.25 CA264_13770 DNA starvation/stationary phase protection protein — —
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS19630 DNA polymerase I 0.23 CA265_RS06325 DNA starvation/stationary phase protection protein 0.54 2
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS05440 DNA polymerase I 0.24 ABI39_RS06080 DNA starvation/stationary phase protection protein — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS02070 DNA polymerase I 0.24 HMPREF1181_RS02165 DNA starvation/stationary phase protection protein low > 56
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1032 DNA polymerase I 0.26 Echvi_0586 DNA-binding ferritin-like protein (oxidative damage protectant) low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS20185 DNA polymerase I 0.25 ABZR88_RS06705 Dps family protein low > 71
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.25 Ga0059261_2678 DNA-binding ferritin-like protein (oxidative damage protectant) low > 68
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS06335 DNA polymerase I 0.23 HMPREF1078_RS01145 Dps family protein low > 61
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_0194 polA DNA polymerase I 0.61 Synpcc7942_0109 DNA-binding ferritin-like protein (oxidative damage protectant)-like — —
Fusobacterium nucleatum SB010 0.22 HUW76_04385 DNA polymerase I 0.15 HUW76_06750 DNA starvation/stationary phase protection protein low > 35

Not shown: 10 genomes with orthologs for GFF5584 only; 0 genomes with orthologs for GFF2804 only