Conservation of cofitness between Psest_0004 and Psest_2545 in Pseudomonas stutzeri RCH2

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0004 recF protein 1.0 Psest_2545 recombination protein RecR 0.75 5
Pseudomonas fluorescens SBW25 0.79 PFLU_RS00015 DNA replication/repair protein RecF 0.87 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS00015 DNA replication/repair protein RecF 0.87 PFLU_RS22415 recombination protein RecR 0.22 61
Pseudomonas sp. SVBP6 0.78 COO64_RS02120 recF DNA replication/repair protein RecF 0.87 COO64_RS18630 recR recombination mediator RecR low > 93
Pseudomonas aeruginosa PA14 0.78 IKLFDK_25545 DNA replication/repair protein RecF 0.88 IKLFDK_07325 recombination mediator RecR low > 101
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.88 Pf1N1B4_3864 Recombination protein RecR 0.75 1
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_10480 recombinase RecF 0.87 AO353_00675 recombination protein RecR 0.55 3
Pseudomonas sp. S08-1 0.77 OH686_12620 DNA recombination and repair protein RecF 0.87 OH686_02385 recombination protein RecR low > 80
Pseudomonas sp. RS175 0.77 PFR28_04593 DNA replication and repair protein RecF 0.89 PFR28_01077 Recombination protein RecR 0.38 31
Pseudomonas syringae pv. syringae B728a 0.77 Psyr_0003 DNA replication and repair protein RecF 0.86 Psyr_3396 DNA replication and repair protein RecR 0.66 4
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_11635 recombinase RecF 0.88 AO356_02495 recombination protein RecR 0.82 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.77 Psyr_0003 DNA replication and repair protein RecF 0.86 Psyr_3396 DNA replication and repair protein RecR 0.71 5
Pseudomonas sp. DMC3 0.77 GFF578 DNA replication and repair protein RecF 0.89 GFF708 Recombination protein RecR low > 89
Pseudomonas sp. BP01 0.77 JOY50_RS08340 recF DNA replication/repair protein RecF 0.87 JOY50_RS00135 recR recombination mediator RecR low > 84
Pseudomonas putida KT2440 0.76 PP_0012 DNA replication and repair protein 0.88 PP_4267 Recombination protein RecR 0.22 12
Pseudomonas simiae WCS417 0.76 PS417_00015 recombinase RecF 0.87 PS417_20800 recombination protein RecR 0.48 3
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_664 DNA recombination and repair protein RecF 0.87 PfGW456L13_4074 Recombination protein RecR 0.37 4
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.88 Pf6N2E2_2325 Recombination protein RecR 0.76 3
Shewanella oneidensis MR-1 0.43 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.59 SO2015 recR recombination protein RecR (NCBI ptt file) 0.64 1
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.59 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.89 1
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.58 Sama_1312 recR recombination protein RecR (RefSeq) 0.80 3
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.60 Shew_2233 recombination protein RecR (RefSeq) 0.41 58
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00065 DNA replication and repair protein RecF 0.60 CSW01_05375 recombination protein RecR low > 62
Dickeya dadantii 3937 0.37 DDA3937_RS21285 DNA replication/repair protein RecF 0.63 DDA3937_RS05790 recombination protein RecR low > 74
Dickeya dianthicola 67-19 0.37 HGI48_RS00015 DNA replication/repair protein RecF 0.62 HGI48_RS05840 recombination protein RecR — —
Dickeya dianthicola ME23 0.37 DZA65_RS00015 DNA replication/repair protein RecF 0.62 DZA65_RS06165 recombination protein RecR low > 75
Pectobacterium carotovorum WPP14 0.37 HER17_RS00015 DNA replication/repair protein RecF 0.63 HER17_RS15695 recombination mediator RecR 0.56 58
Erwinia tracheiphila SCR3 0.36 LU632_RS00015 recF DNA replication/repair protein RecF 0.62 LU632_RS18105 recR recombination mediator RecR low > 74
Erwinia amylovora T8 0.36 OLJFJH_05150 DNA replication/repair protein RecF 0.63 OLJFJH_17805 recombination mediator RecR low > 58
Escherichia coli ECRC100 0.36 OKFHMN_15025 recF DNA replication/repair protein RecF 0.64 OKFHMN_08155 recR recombination mediator RecR low > 80
Escherichia coli Nissle 1917 0.36 ECOLIN_RS21310 DNA replication/repair protein RecF 0.64 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia coli ECRC98 0.36 JDDGAC_18645 recF DNA replication/repair protein RecF 0.64 JDDGAC_11805 recR recombination mediator RecR low > 86
Escherichia coli BL21 0.36 ECD_03583 gap repair protein 0.64 ECD_00423 gap repair protein 0.84 4
Escherichia coli ECRC102 0.36 NIAGMN_12780 recF DNA replication/repair protein RecF 0.64 NIAGMN_06210 recR recombination mediator RecR — —
Alteromonas macleodii MIT1002 0.36 MIT1002_00003 DNA replication and repair protein RecF 0.62 MIT1002_02649 Recombination protein RecR low > 70
Escherichia coli ECRC62 0.36 BNILDI_04365 recF DNA replication/repair protein RecF 0.64 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia coli ECOR27 0.36 NOLOHH_07165 recF DNA replication/repair protein RecF 0.64 NOLOHH_01085 recR recombination mediator RecR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00003 DNA replication and repair protein RecF 0.64 OHPLBJKB_03202 Recombination protein RecR low > 73
Escherichia coli BW25113 0.36 b3700 recF recombination protein F (NCBI) 0.64 b0472 recR recombination protein RecR (NCBI) 0.94 1
Rahnella sp. WP5 0.36 EX31_RS05975 DNA replication/repair protein RecF 0.63 EX31_RS22525 recombination protein RecR low > 89
Escherichia fergusonii Becca 0.36 EFB2_00003 DNA replication and repair protein RecF 0.64 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli ECRC101 0.36 MCAODC_05535 recF DNA replication/repair protein RecF 0.64 MCAODC_27380 recR recombination mediator RecR 0.88 2
Escherichia coli ECRC99 0.36 KEDOAH_13125 recF DNA replication/repair protein RecF 0.64 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECOR38 0.36 HEPCGN_13720 recF DNA replication/repair protein RecF 0.64 HEPCGN_06770 recR recombination mediator RecR low > 87
Enterobacter asburiae PDN3 0.36 EX28DRAFT_3987 DNA replication and repair protein RecF 0.63 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF1756 DNA recombination and repair protein RecF 0.64 GFF4390 Recombination protein RecR 0.61 15
Enterobacter sp. TBS_079 0.36 MPMX20_00003 DNA replication and repair protein RecF 0.64 MPMX20_01074 Recombination protein RecR 0.33 27
Serratia liquefaciens MT49 0.36 IAI46_00015 DNA replication/repair protein RecF 0.64 IAI46_05240 recombination protein RecR 0.68 17
Pantoea sp. MT58 0.35 IAI47_00015 DNA replication/repair protein RecF 0.62 IAI47_14465 recombination protein RecR 0.32 64
Marinobacter adhaerens HP15 0.35 HP15_3705 DNA replication and repair protein recF 0.62 HP15_1883 recombination protein RecR — —
Klebsiella michiganensis M5al 0.35 BWI76_RS00010 DNA replication and repair protein RecF 0.63 BWI76_RS06830 recombination protein RecR 0.42 1
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.61 B158DRAFT_2480 DNA replication and repair protein RecR 0.95 2
Acinetobacter radioresistens SK82 0.30 MPMX26_00003 DNA replication and repair protein RecF 0.55 MPMX26_01643 Recombination protein RecR low > 36
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS08475 DNA replication/repair protein RecF 0.59 LRK54_RS01250 recombination mediator RecR low > 59
Rhodanobacter denitrificans MT42 0.28 LRK55_RS08240 DNA replication/repair protein RecF 0.59 LRK55_RS01020 recombination mediator RecR low > 63
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS15145 DNA replication/repair protein RecF 0.58 ABZR86_RS06235 recombination mediator RecR 0.88 2
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS00015 DNA replication/repair protein RecF 0.60 LRK53_RS08825 recombination mediator RecR low > 60
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15255 recF DNA replication/repair protein RecF 0.59 OKGIIK_05655 recR recombination mediator RecR low > 52
Lysobacter sp. OAE881 0.26 ABIE51_RS00765 DNA replication/repair protein RecF 0.59 ABIE51_RS14010 recombination mediator RecR low > 62
Xanthomonas campestris pv. campestris strain 8004 0.23 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.53 Xcc-8004.4012.1 Recombination protein RecR low > 74
Parabacteroides merdae CL09T00C40 0.19 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.38 HMPREF1078_RS07615 recombination mediator RecR low > 61
Bacteroides thetaiotaomicron VPI-5482 0.17 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.37 BT1081 recombination protein recR (NCBI ptt file) low > 81
Agrobacterium fabrum C58 0.17 Atu0073 recF-like protein 0.39 Atu0093 Recombination protein 0.79 1
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.37 HMPREF1181_RS16455 recombination protein RecR low > 56
Cellulophaga baltica 18 0.16 M666_RS11055 DNA replication and repair protein RecF 0.36 M666_RS09385 recombination mediator RecR 0.49 62
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.35 HMPREF1058_RS18560 recombination protein RecR 0.63 57
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS13135 DNA replication and repair protein RecF 0.35 ABI39_RS14870 recombination protein RecR low > 72
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS21650 DNA replication/repair protein RecF 0.37 ABZR88_RS10695 recombination mediator RecR low > 71
Fusobacterium nucleatum SB010 0.15 HUW76_00025 DNA replication/repair protein RecF 0.40 HUW76_08785 recombination protein RecR — —
Pedobacter sp. GW460-11-11-14-LB5 0.15 CA265_RS24760 DNA replication and repair protein RecF 0.35 CA265_RS04980 recombination protein RecR 0.86 8
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1156 recF protein 0.40 Echvi_1987 recombination protein RecR 0.91 2
Rhizobium sp. OAE497 0.15 ABIE40_RS00200 DNA replication/repair protein RecF 0.37 ABIE40_RS00300 recombination mediator RecR low > 107
Azospirillum sp. SherDot2 0.15 MPMX19_02716 DNA replication and repair protein RecF 0.41 MPMX19_02195 Recombination protein RecR — —
Bosea sp. OAE506 0.15 ABIE41_RS04170 DNA replication/repair protein RecF 0.37 ABIE41_RS04035 recombination mediator RecR — —
Rhodopseudomonas palustris CGA009 0.14 TX73_000015 DNA replication/repair protein RecF 0.39 TX73_003195 recombination mediator RecR — —
Sinorhizobium meliloti 1021 0.14 SMc02863 recombination protein F 0.38 SMc02908 recombination protein RecR 0.81 3
Azospirillum brasilense Sp245 0.13 AZOBR_RS17670 recombinase RecF 0.42 AZOBR_RS03880 recombinase RecR 0.55 8
Xanthobacter sp. DMC5 0.13 GFF3876 DNA replication and repair protein RecF 0.37 GFF3747 Recombination protein RecR — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_17475 DNA replication and repair protein RecF 0.38 CA264_01105 recombination protein RecR 0.83 3
Bifidobacterium breve UCC2003 0.12 BBR_RS10265 DNA replication and repair protein RecF 0.41 BBR_RS10990 recombination protein RecR 0.93 1
Caulobacter crescentus NA1000 Δfur 0.12 CCNA_00158 DNA replication and repair protein recF 0.40 CCNA_00270 Recombination protein recR low > 67
Caulobacter crescentus NA1000 0.12 CCNA_00158 DNA replication and repair protein recF 0.40 CCNA_00270 Recombination protein recR 0.94 1
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_2727 DNA replication and repair protein RecF 0.41 Ga0059261_0645 DNA replication and repair protein RecR — —
Rhodospirillum rubrum S1H 0.11 Rru_A0003 RecF protein (NCBI) 0.42 Rru_A3471 RecR protein (NCBI) — —
Magnetospirillum magneticum AMB-1 0.11 AMB_RS03285 DNA replication and repair protein RecF 0.41 AMB_RS20755 recombination protein RecR — —
Dinoroseobacter shibae DFL-12 0.10 Dshi_3375 SMC domain protein (RefSeq) 0.37 Dshi_0648 recombination protein RecR (RefSeq) 0.54 18
Brevundimonas sp. GW460-12-10-14-LB2 0.10 A4249_RS15360 DNA replication/repair protein RecF 0.36 A4249_RS15115 recombination mediator RecR low > 48
Phaeobacter inhibens DSM 17395 0.09 PGA1_c00030 DNA replication and repair protein RecF 0.34 PGA1_c30290 recombination protein RecR 0.67 5
Synechococcus elongatus PCC 7942 0.09 Synpcc7942_2250 recF recombination protein F 0.40 Synpcc7942_1369 recR recombination protein RecR — —
Synechocystis sp000284455 PCC 6803 0.09 SGL_RS07025 DNA replication/repair protein RecF 0.43 SGL_RS17075 recombination mediator RecR — —
Mycobacterium tuberculosis H37Rv 0.08 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.44 Rv3715c Probable recombination protein RecR low > 58

Not shown: 1 genomes with orthologs for Psest_0004 only; 20 genomes with orthologs for Psest_2545 only