| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 1.0 | GFF2220 | | Nitrogen regulation protein NR(I) | 0.90 | 13 |
| Escherichia coli ECOR38 | 0.87 | HEPCGN_16385 | aroE | shikimate dehydrogenase | 0.97 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | low | > 87 |
| Escherichia coli ECOR27 | 0.87 | NOLOHH_09355 | aroE | shikimate dehydrogenase | 0.97 | NOLOHH_06240 | glnG | nitrogen regulation protein NR(I) | low | > 75 |
| Escherichia coli ECRC62 | 0.87 | BNILDI_02165 | aroE | shikimate dehydrogenase | 0.97 | BNILDI_05290 | glnG | nitrogen regulation protein NR(I) | low | > 75 |
| Escherichia coli Nissle 1917 | 0.87 | ECOLIN_RS18840 | | shikimate dehydrogenase | 0.97 | ECOLIN_RS22295 | | nitrogen regulation protein NR(I) | low | > 55 |
| Escherichia coli BW25113 | 0.87 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | 0.97 | b3868 | glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.87 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | 0.97 | OHPLBJKB_04184 | | DNA-binding transcriptional regulator NtrC | low | > 73 |
| Escherichia coli BL21 | 0.87 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | 0.97 | ECD_03753 | | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein | low | > 61 |
| Escherichia coli ECRC101 | 0.87 | MCAODC_08085 | aroE | shikimate dehydrogenase | 0.97 | MCAODC_04610 | glnG | nitrogen regulation protein NR(I) | low | > 87 |
| Escherichia coli ECRC98 | 0.87 | JDDGAC_21185 | aroE | shikimate dehydrogenase | 0.97 | JDDGAC_17735 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli ECRC100 | 0.87 | OKFHMN_17565 | aroE | shikimate dehydrogenase | 0.97 | OKFHMN_14110 | glnG | nitrogen regulation protein NR(I) | low | > 80 |
| Escherichia coli ECRC102 | 0.87 | NIAGMN_15325 | aroE | shikimate dehydrogenase | 0.97 | NIAGMN_11865 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli ECRC99 | 0.87 | KEDOAH_10585 | aroE | shikimate dehydrogenase | 0.97 | KEDOAH_14040 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia fergusonii Becca | 0.86 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | 0.97 | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | low | > 86 |
| Enterobacter asburiae PDN3 | 0.81 | EX28DRAFT_0046 | | shikimate dehydrogenase | 0.94 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | 0.94 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | low | > 85 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS25645 | | shikimate dehydrogenase | 0.94 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.47 | 91 |
| Serratia liquefaciens MT49 | 0.66 | IAI46_23240 | | shikimate dehydrogenase | 0.92 | IAI46_24960 | | nitrogen regulation protein NR(I) | 0.57 | 63 |
| Pantoea sp. MT58 | 0.62 | IAI47_02315 | | shikimate dehydrogenase | 0.94 | IAI47_00450 | | nitrogen regulation protein NR(I) | — | — |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS22445 | aroE | shikimate dehydrogenase | 0.94 | LU632_RS22135 | glnG | nitrogen regulation protein NR(I) | low | > 74 |
| Rahnella sp. WP5 | 0.62 | EX31_RS15950 | | shikimate dehydrogenase | 0.93 | EX31_RS15880 | | nitrogen regulation protein NR(I) | — | — |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS02250 | | shikimate dehydrogenase | 0.93 | HER17_RS21440 | | nitrogen regulation protein NR(I) | low | > 75 |
| Dickeya dianthicola ME23 | 0.61 | DZA65_RS20315 | | shikimate dehydrogenase | 0.91 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | — | — |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS19100 | | shikimate dehydrogenase | 0.92 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | — | — |
| Dickeya dianthicola 67-19 | 0.60 | HGI48_RS19190 | | shikimate dehydrogenase | 0.91 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | — | — |
| Shewanella sp. ANA-3 | 0.48 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | 0.70 | Shewana3_0258 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_00280 | | shikimate dehydrogenase | 0.73 | CSW01_13865 | | nitrogen regulation protein NR(I) | low | > 62 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_11315 | | shikimate dehydrogenase | 0.68 | AO356_09730 | | nitrogen regulation protein NR(I) | low | > 104 |
| Pseudomonas sp. S08-1 | 0.46 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | 0.68 | OH686_10640 | | nitrogen regulation protein NR(I) | low | > 80 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | 0.68 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_0025 | | shikimate dehydrogenase | 0.68 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_0025 | | shikimate dehydrogenase | 0.68 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | low | > 86 |
| Shewanella loihica PV-4 | 0.46 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | 0.69 | Shew_3561 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.46 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | 0.70 | SO4472 | ntrC | nitrogen regulation protein NR(I) (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.68 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | 0.38 | 77 |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.68 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.45 | AO353_10670 | | shikimate dehydrogenase | 0.68 | AO353_12145 | | nitrogen regulation protein NR(I) | low | > 101 |
| Dechlorosoma suillum PS | 0.45 | Dsui_0443 | | shikimate 5-dehydrogenase | 0.56 | Dsui_1051 | | nitrogen regulation protein NR(I) | — | — |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS00120 | | shikimate dehydrogenase | 0.68 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS00120 | | shikimate dehydrogenase | 0.68 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.68 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_0029 | | shikimate 5-dehydrogenase | 0.66 | Psest_3932 | | nitrogen regulation protein NR(I) | — | — |
| Pseudomonas simiae WCS417 | 0.44 | PS417_00125 | | shikimate dehydrogenase | 0.68 | PS417_01635 | | nitrogen regulation protein NR(I) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS01990 | | shikimate 5-dehydrogenase | 0.58 | HSERO_RS15680 | | chemotaxis protein CheY | low | > 78 |
| Pseudomonas putida KT2440 | 0.42 | PP_0074 | | shikimate 5-dehydrogenase | 0.68 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | — | — |
| Shewanella amazonensis SB2B | 0.42 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | 0.69 | Sama_3427 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS27130 | | shikimate dehydrogenase | 0.55 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | low | > 153 |
| Marinobacter adhaerens HP15 | 0.39 | HP15_3750 | | shikimate dehydrogenase | 0.65 | HP15_425 | | two-component response regulator NtrC | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_01679 | | shikimate dehydrogenase (EC 1.1.1.25) | 0.55 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS01605 | | shikimate dehydrogenase | 0.56 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_003560 | | shikimate dehydrogenase | 0.55 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF5226 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.54 | GFF5269 | | Nitrogen regulation protein NR(I) | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS11620 | | shikimate dehydrogenase | 0.51 | ABCV34_RS03540 | | nitrogen regulation protein NR(I) | low | > 48 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | 0.64 | MPMX26_01292 | | DNA-binding transcriptional regulator NtrC | low | > 36 |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS11300 | | shikimate dehydrogenase | 0.57 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | 0.55 | BPHYT_RS12935 | | chemotaxis protein CheY | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.37 | RS_RS13890 | | shikimate dehydrogenase | 0.57 | RS_RS06320 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum UW163 | 0.37 | UW163_RS07680 | | shikimate dehydrogenase | 0.56 | UW163_RS13000 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.37 | RALBFv3_RS05945 | | shikimate dehydrogenase | 0.56 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.36 | RR42_RS17645 | | shikimate dehydrogenase | 0.57 | RR42_RS12980 | | chemotaxis protein CheY | low | > 128 |
| Rhodanobacter denitrificans FW104-10B01 | 0.34 | LRK54_RS08595 | | shikimate dehydrogenase | 0.47 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | 0.56 | 43 |
| Rhodanobacter denitrificans MT42 | 0.34 | LRK55_RS08360 | | shikimate dehydrogenase | 0.46 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.33 | ABZR86_RS14985 | | shikimate dehydrogenase | 0.44 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.32 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.48 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.31 | OKGIIK_15365 | aroE | shikimate dehydrogenase | 0.45 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | — | — |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_4044 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.55 | Ac3H11_4432 | | Nitrogen regulation protein NR(I) | low | > 79 |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS01815 | | shikimate dehydrogenase | 0.49 | ABIE51_RS01360 | | nitrogen regulation protein NR(I) | low | > 62 |
| Variovorax sp. SCN45 | 0.29 | GFF4456 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.56 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | — | — |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_00029 | | Shikimate dehydrogenase | 0.71 | MIT1002_03186 | | Nitrogen regulation protein NR(I) | — | — |
| Variovorax sp. OAS795 | 0.26 | ABID97_RS06300 | | shikimate dehydrogenase | 0.56 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | 0.31 | Dshi_1572 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | — | — |
| Agrobacterium fabrum C58 | 0.22 | Atu0003 | | shikimate 5-dehydrogenase | 0.42 | Atu1446 | | two component response regulator | — | — |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c35150 | | shikimate dehydrogenase AroE | 0.30 | PGA1_c14810 | | nitrogen assimilation regulatory protein NtrX | — | — |
| Sinorhizobium meliloti 1021 | 0.21 | SMc02791 | | shikimate 5-dehydrogenase | 0.42 | SMc01043 | | nitrogen assimilation regulatory protein | — | — |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | 0.40 | Rru_A1678 | | Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.20 | TX73_022410 | | shikimate dehydrogenase | 0.41 | TX73_013420 | | nitrogen regulation protein NR(I) | — | — |
| Azospirillum sp. SherDot2 | 0.20 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | 0.41 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | — | — |
| Rhizobium sp. OAE497 | 0.19 | ABIE40_RS19250 | | shikimate dehydrogenase | 0.42 | ABIE40_RS09090 | | nitrogen regulation protein NR(I) | — | — |
| Bosea sp. OAE506 | 0.17 | ABIE41_RS04650 | | shikimate dehydrogenase | 0.41 | ABIE41_RS16785 | | nitrogen regulation protein NR(I) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.16 | BACOVA_05065 | | putative shikimate dehydrogenase | 0.32 | BACOVA_04264 | | Sigma-54 interaction domain protein | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.16 | Ga0059261_2194 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | 0.38 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | low | > 68 |
| Bacteroides stercoris CC31F | 0.15 | HMPREF1181_RS06320 | | shikimate dehydrogenase | 0.32 | HMPREF1181_RS03655 | | sigma-54-dependent Fis family transcriptional regulator | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.15 | HMPREF1058_RS16750 | | shikimate dehydrogenase | 0.34 | HMPREF1058_RS04160 | | sigma-54-dependent Fis family transcriptional regulator | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.15 | ABI39_RS12665 | | shikimate dehydrogenase | 0.34 | ABI39_RS17060 | | sigma-54-dependent Fis family transcriptional regulator | low | > 72 |